Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00322

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00321 and MPMX19_00322 are separated by 276 nucleotidesMPMX19_00322 and MPMX19_00323 are separated by 61 nucleotidesMPMX19_00323 and MPMX19_00324 are separated by 46 nucleotides MPMX19_00321: MPMX19_00321 - hypothetical protein, at 325,361 to 326,713 _00321 MPMX19_00322: MPMX19_00322 - Signal recognition particle protein, at 326,990 to 328,432 _00322 MPMX19_00323: MPMX19_00323 - 30S ribosomal protein S16, at 328,494 to 328,850 _00323 MPMX19_00324: MPMX19_00324 - Ribosome maturation factor RimM, at 328,897 to 329,496 _00324 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 326.164 kb on + strand, within MPMX19_00321at 326.165 kb on - strand, within MPMX19_00321at 326.289 kb on + strand, within MPMX19_00321at 326.289 kb on + strand, within MPMX19_00321at 326.289 kb on + strand, within MPMX19_00321at 326.289 kb on + strand, within MPMX19_00321at 326.289 kb on + strand, within MPMX19_00321at 326.290 kb on - strand, within MPMX19_00321at 326.290 kb on - strand, within MPMX19_00321at 326.290 kb on - strand, within MPMX19_00321at 326.290 kb on - strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.301 kb on + strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.302 kb on - strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.322 kb on + strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.323 kb on - strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.463 kb on + strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.464 kb on - strand, within MPMX19_00321at 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.722 kb on + strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.723 kb on - strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.731 kb on + strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.732 kb on - strandat 326.746 kb on - strandat 326.746 kb on - strandat 326.746 kb on - strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.833 kb on + strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.834 kb on - strandat 326.921 kb on + strandat 326.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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326,164 + MPMX19_00321 0.59 +0.3
326,165 - MPMX19_00321 0.59 -1.8
326,289 + MPMX19_00321 0.69 +0.0
326,289 + MPMX19_00321 0.69 -0.0
326,289 + MPMX19_00321 0.69 +0.2
326,289 + MPMX19_00321 0.69 -1.6
326,289 + MPMX19_00321 0.69 -0.2
326,290 - MPMX19_00321 0.69 -2.0
326,290 - MPMX19_00321 0.69 -0.4
326,290 - MPMX19_00321 0.69 -1.8
326,290 - MPMX19_00321 0.69 -1.8
326,301 + MPMX19_00321 0.69 -0.4
326,301 + MPMX19_00321 0.69 -0.7
326,301 + MPMX19_00321 0.69 +1.3
326,301 + MPMX19_00321 0.69 -0.0
326,301 + MPMX19_00321 0.69 -0.7
326,301 + MPMX19_00321 0.69 -0.3
326,301 + MPMX19_00321 0.69 -0.4
326,301 + MPMX19_00321 0.69 -1.6
326,301 + MPMX19_00321 0.69 +1.0
326,301 + MPMX19_00321 0.69 +1.0
326,301 + MPMX19_00321 0.69 +0.7
326,301 + MPMX19_00321 0.69 +0.7
326,301 + MPMX19_00321 0.69 -1.6
326,301 + MPMX19_00321 0.69 -1.4
326,301 + MPMX19_00321 0.69 -1.4
326,301 + MPMX19_00321 0.69 -0.3
326,301 + MPMX19_00321 0.69 -0.6
326,301 + MPMX19_00321 0.69 -0.2
326,301 + MPMX19_00321 0.69 +0.1
326,301 + MPMX19_00321 0.69 -0.8
326,301 + MPMX19_00321 0.69 +0.2
326,302 - MPMX19_00321 0.70 +0.1
326,302 - MPMX19_00321 0.70 +0.1
326,302 - MPMX19_00321 0.70 -0.9
326,302 - MPMX19_00321 0.70 -1.9
326,302 - MPMX19_00321 0.70 +0.5
326,302 - MPMX19_00321 0.70 -1.0
326,302 - MPMX19_00321 0.70 -0.3
326,302 - MPMX19_00321 0.70 -0.0
326,302 - MPMX19_00321 0.70 -0.6
326,302 - MPMX19_00321 0.70 -0.4
326,302 - MPMX19_00321 0.70 -0.3
326,302 - MPMX19_00321 0.70 -0.6
326,302 - MPMX19_00321 0.70 +0.2
326,302 - MPMX19_00321 0.70 -1.4
326,302 - MPMX19_00321 0.70 +1.2
326,302 - MPMX19_00321 0.70 +0.8
326,302 - MPMX19_00321 0.70 +1.1
326,302 - MPMX19_00321 0.70 -0.6
326,302 - MPMX19_00321 0.70 +0.6
326,322 + MPMX19_00321 0.71 +0.7
326,322 + MPMX19_00321 0.71 +0.4
326,322 + MPMX19_00321 0.71 -0.4
326,322 + MPMX19_00321 0.71 -2.3
326,322 + MPMX19_00321 0.71 -0.0
326,322 + MPMX19_00321 0.71 +1.4
326,322 + MPMX19_00321 0.71 -0.6
326,322 + MPMX19_00321 0.71 +0.7
326,322 + MPMX19_00321 0.71 -0.0
326,322 + MPMX19_00321 0.71 +0.6
326,323 - MPMX19_00321 0.71 +1.2
326,323 - MPMX19_00321 0.71 -0.8
326,323 - MPMX19_00321 0.71 -1.0
326,323 - MPMX19_00321 0.71 +0.0
326,323 - MPMX19_00321 0.71 -0.2
326,323 - MPMX19_00321 0.71 -0.6
326,463 + MPMX19_00321 0.81 -0.2
326,463 + MPMX19_00321 0.81 +0.7
326,463 + MPMX19_00321 0.81 +0.7
326,463 + MPMX19_00321 0.81 +0.1
326,463 + MPMX19_00321 0.81 -1.0
326,463 + MPMX19_00321 0.81 -2.1
326,463 + MPMX19_00321 0.81 -1.2
326,464 - MPMX19_00321 0.82 +0.1
326,464 - MPMX19_00321 0.82 -0.6
326,464 - MPMX19_00321 0.82 +1.0
326,464 - MPMX19_00321 0.82 -3.3
326,464 - MPMX19_00321 0.82 -1.2
326,464 - MPMX19_00321 0.82 -0.4
326,464 - MPMX19_00321 0.82 -0.3
326,464 - MPMX19_00321 0.82 +0.3
326,464 - MPMX19_00321 0.82 +0.4
326,722 + -1.4
326,722 + -1.8
326,722 + -0.8
326,722 + -0.9
326,722 + +0.6
326,722 + +1.4
326,722 + -1.3
326,722 + -1.5
326,722 + -0.8
326,722 + -1.2
326,722 + -0.1
326,723 - -0.4
326,723 - +2.3
326,723 - -0.4
326,723 - -0.4
326,723 - +0.8
326,723 - +0.1
326,723 - +0.7
326,723 - +0.8
326,723 - -0.1
326,723 - +0.1
326,731 + -1.0
326,731 + +0.7
326,731 + -1.4
326,731 + +0.4
326,731 + -0.8
326,731 + +0.2
326,731 + -0.2
326,732 - -0.0
326,732 - +0.6
326,732 - -0.8
326,732 - -1.0
326,732 - +1.1
326,732 - +0.6
326,732 - -0.2
326,732 - +0.3
326,732 - -0.4
326,732 - -0.6
326,732 - -3.0
326,732 - +0.2
326,732 - -0.6
326,732 - -0.6
326,746 - +0.1
326,746 - -0.0
326,746 - +0.4
326,833 + -0.2
326,833 + +1.1
326,833 + -0.0
326,833 + -0.8
326,833 + +0.3
326,833 + -1.0
326,833 + -0.7
326,833 + -0.1
326,833 + -0.6
326,833 + -0.4
326,833 + -0.4
326,833 + -1.6
326,834 - +1.6
326,834 - -0.4
326,834 - -2.2
326,834 - +0.4
326,834 - +0.0
326,834 - -1.4
326,834 - -0.0
326,834 - -0.0
326,834 - -0.8
326,834 - +0.6
326,921 + -1.2
326,921 + +1.6

Or see this region's nucleotide sequence