Strain Fitness in Methylophilus sp. DMC18 around GFF892

Experiment: D-Glucose and Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF891 and GFF892 are separated by 35 nucleotidesGFF892 and GFF893 are separated by 73 nucleotides GFF891 - hypothetical protein, at 128,185 to 129,291 GFF891 GFF892 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 129,327 to 130,199 GFF892 GFF893 - 50S ribosomal protein L3 glutamine methyltransferase, at 130,273 to 131,175 GFF893 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.619 kb on + strand, within GFF891at 128.683 kb on + strand, within GFF891at 128.683 kb on + strand, within GFF891at 128.833 kb on + strand, within GFF891at 128.847 kb on + strand, within GFF891at 129.098 kb on + strand, within GFF891at 129.098 kb on + strand, within GFF891at 129.098 kb on + strand, within GFF891at 129.098 kb on + strand, within GFF891at 129.114 kb on + strand, within GFF891at 129.126 kb on + strand, within GFF891at 129.135 kb on + strand, within GFF891at 129.192 kb on + strandat 129.193 kb on - strandat 129.193 kb on - strandat 129.240 kb on + strandat 129.241 kb on - strandat 129.247 kb on - strandat 129.290 kb on - strandat 129.401 kb on + strandat 129.402 kb on - strandat 129.404 kb on + strandat 129.404 kb on + strandat 129.404 kb on + strandat 129.459 kb on + strand, within GFF892at 129.459 kb on + strand, within GFF892at 129.497 kb on + strand, within GFF892at 129.498 kb on - strand, within GFF892at 129.498 kb on - strand, within GFF892at 129.521 kb on + strand, within GFF892at 129.572 kb on + strand, within GFF892at 129.573 kb on - strand, within GFF892at 129.853 kb on + strand, within GFF892at 129.853 kb on + strand, within GFF892at 129.854 kb on - strand, within GFF892at 129.920 kb on + strand, within GFF892at 129.920 kb on + strand, within GFF892at 129.958 kb on + strand, within GFF892at 129.958 kb on + strand, within GFF892at 129.958 kb on + strand, within GFF892at 129.959 kb on - strand, within GFF892at 129.959 kb on - strand, within GFF892at 129.959 kb on - strand, within GFF892at 129.959 kb on - strand, within GFF892at 129.959 kb on - strand, within GFF892at 130.016 kb on + strand, within GFF892at 130.016 kb on + strand, within GFF892at 130.017 kb on - strand, within GFF892at 130.042 kb on - strand, within GFF892at 130.042 kb on - strand, within GFF892at 130.042 kb on - strand, within GFF892at 130.092 kb on + strand, within GFF892at 130.092 kb on + strand, within GFF892at 130.092 kb on + strand, within GFF892at 130.092 kb on + strand, within GFF892at 130.092 kb on + strand, within GFF892at 130.093 kb on - strand, within GFF892at 130.093 kb on - strand, within GFF892at 130.093 kb on - strand, within GFF892at 130.093 kb on - strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.108 kb on + strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.109 kb on - strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.110 kb on + strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.111 kb on - strand, within GFF892at 130.197 kb on + strandat 130.233 kb on + strandat 130.234 kb on - strandat 130.234 kb on - strandat 130.234 kb on - strandat 130.243 kb on + strandat 130.243 kb on + strandat 130.243 kb on + strandat 130.244 kb on - strandat 130.244 kb on - strandat 130.244 kb on - strandat 130.258 kb on + strandat 130.259 kb on - strandat 130.275 kb on - strandat 130.312 kb on - strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.360 kb on - strandat 130.366 kb on + strand, within GFF893at 130.366 kb on + strand, within GFF893at 130.366 kb on + strand, within GFF893at 130.367 kb on - strand, within GFF893at 130.367 kb on - strand, within GFF893at 130.376 kb on + strand, within GFF893at 130.421 kb on - strand, within GFF893at 130.443 kb on - strand, within GFF893at 130.443 kb on - strand, within GFF893at 130.443 kb on - strand, within GFF893at 130.527 kb on - strand, within GFF893at 130.538 kb on - strand, within GFF893at 130.551 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.561 kb on + strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.562 kb on - strand, within GFF893at 130.565 kb on + strand, within GFF893at 130.565 kb on + strand, within GFF893at 130.566 kb on - strand, within GFF893at 130.592 kb on + strand, within GFF893at 130.593 kb on - strand, within GFF893at 130.593 kb on - strand, within GFF893at 130.593 kb on - strand, within GFF893at 130.621 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.675 kb on - strand, within GFF893at 130.677 kb on + strand, within GFF893at 130.678 kb on - strand, within GFF893at 130.678 kb on - strand, within GFF893at 130.747 kb on + strand, within GFF893at 130.748 kb on - strand, within GFF893at 130.780 kb on - strand, within GFF893at 130.780 kb on - strand, within GFF893at 130.813 kb on + strand, within GFF893at 130.851 kb on + strand, within GFF893at 130.886 kb on + strand, within GFF893at 130.938 kb on + strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.939 kb on - strand, within GFF893at 130.972 kb on + strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 130.973 kb on - strand, within GFF893at 131.016 kb on + strand, within GFF893at 131.017 kb on - strand, within GFF893at 131.075 kb on + strand, within GFF893at 131.075 kb on + strand, within GFF893at 131.076 kb on - strand, within GFF893at 131.076 kb on - strand, within GFF893at 131.076 kb on - strand, within GFF893at 131.076 kb on - strand, within GFF893at 131.076 kb on - strand, within GFF893at 131.157 kb on + strandat 131.157 kb on + strandat 131.157 kb on + strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.158 kb on - strandat 131.161 kb on + strandat 131.161 kb on + strandat 131.161 kb on + strandat 131.161 kb on + strandat 131.161 kb on + strandat 131.162 kb on - strandat 131.162 kb on - strandat 131.162 kb on - strandat 131.176 kb on + strandat 131.177 kb on - strandat 131.177 kb on - strandat 131.177 kb on - strandat 131.192 kb on - strandat 131.192 kb on - strandat 131.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
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128,619 + GFF891 0.39 +0.8
128,683 + GFF891 0.45 -0.8
128,683 + GFF891 0.45 -0.1
128,833 + GFF891 0.59 -0.1
128,847 + GFF891 0.60 -0.8
129,098 + GFF891 0.82 -0.8
129,098 + GFF891 0.82 -0.4
129,098 + GFF891 0.82 +0.2
129,098 + GFF891 0.82 -0.2
129,114 + GFF891 0.84 -0.5
129,126 + GFF891 0.85 -1.4
129,135 + GFF891 0.86 -1.1
129,192 + -0.8
129,193 - -0.1
129,193 - -0.1
129,240 + -0.2
129,241 - -0.0
129,247 - +0.2
129,290 - -0.4
129,401 + -0.3
129,402 - +0.2
129,404 + -1.8
129,404 + -0.1
129,404 + +0.4
129,459 + GFF892 0.15 -1.1
129,459 + GFF892 0.15 -1.4
129,497 + GFF892 0.19 -0.7
129,498 - GFF892 0.20 -0.8
129,498 - GFF892 0.20 -0.1
129,521 + GFF892 0.22 +0.0
129,572 + GFF892 0.28 +0.4
129,573 - GFF892 0.28 -1.6
129,853 + GFF892 0.60 +0.2
129,853 + GFF892 0.60 -1.8
129,854 - GFF892 0.60 -1.3
129,920 + GFF892 0.68 +0.2
129,920 + GFF892 0.68 -0.8
129,958 + GFF892 0.72 -0.2
129,958 + GFF892 0.72 -1.6
129,958 + GFF892 0.72 -0.8
129,959 - GFF892 0.72 +0.0
129,959 - GFF892 0.72 +0.0
129,959 - GFF892 0.72 +0.5
129,959 - GFF892 0.72 -0.1
129,959 - GFF892 0.72 -0.0
130,016 + GFF892 0.79 -0.4
130,016 + GFF892 0.79 -0.8
130,017 - GFF892 0.79 +0.2
130,042 - GFF892 0.82 -1.3
130,042 - GFF892 0.82 -0.2
130,042 - GFF892 0.82 -0.2
130,092 + GFF892 0.88 -0.6
130,092 + GFF892 0.88 -0.4
130,092 + GFF892 0.88 -1.1
130,092 + GFF892 0.88 -1.6
130,092 + GFF892 0.88 +0.8
130,093 - GFF892 0.88 +0.5
130,093 - GFF892 0.88 +0.2
130,093 - GFF892 0.88 +0.5
130,093 - GFF892 0.88 -0.1
130,108 + GFF892 0.89 -0.1
130,108 + GFF892 0.89 -1.9
130,108 + GFF892 0.89 -0.1
130,108 + GFF892 0.89 -0.8
130,108 + GFF892 0.89 -2.0
130,108 + GFF892 0.89 -0.4
130,109 - GFF892 0.90 -0.5
130,109 - GFF892 0.90 -1.5
130,109 - GFF892 0.90 +0.1
130,109 - GFF892 0.90 -0.6
130,109 - GFF892 0.90 +0.3
130,109 - GFF892 0.90 -1.0
130,109 - GFF892 0.90 -0.3
130,109 - GFF892 0.90 +0.6
130,109 - GFF892 0.90 -0.0
130,109 - GFF892 0.90 -0.9
130,109 - GFF892 0.90 -1.1
130,109 - GFF892 0.90 -0.4
130,110 + GFF892 0.90 -0.6
130,110 + GFF892 0.90 -0.2
130,110 + GFF892 0.90 -0.7
130,110 + GFF892 0.90 +0.2
130,110 + GFF892 0.90 -0.4
130,110 + GFF892 0.90 -0.2
130,111 - GFF892 0.90 -0.2
130,111 - GFF892 0.90 +0.5
130,111 - GFF892 0.90 -1.6
130,111 - GFF892 0.90 -1.3
130,111 - GFF892 0.90 -1.1
130,111 - GFF892 0.90 -0.7
130,111 - GFF892 0.90 +0.8
130,111 - GFF892 0.90 +0.5
130,197 + -0.1
130,233 + -0.0
130,234 - -0.5
130,234 - -1.8
130,234 - +0.2
130,243 + -0.8
130,243 + -2.1
130,243 + +0.2
130,244 - -1.5
130,244 - +0.1
130,244 - +0.5
130,258 + -0.0
130,259 - -0.2
130,275 - -0.2
130,312 - -0.6
130,320 + -2.1
130,320 + +0.2
130,320 + -0.6
130,321 - -0.0
130,321 - +0.2
130,360 - +0.5
130,366 + GFF893 0.10 -0.4
130,366 + GFF893 0.10 -1.0
130,366 + GFF893 0.10 -0.3
130,367 - GFF893 0.10 -0.8
130,367 - GFF893 0.10 -0.6
130,376 + GFF893 0.11 -1.1
130,421 - GFF893 0.16 -0.3
130,443 - GFF893 0.19 +0.4
130,443 - GFF893 0.19 -2.0
130,443 - GFF893 0.19 -0.5
130,527 - GFF893 0.28 -0.1
130,538 - GFF893 0.29 -1.1
130,551 + GFF893 0.31 -0.8
130,561 + GFF893 0.32 -1.1
130,561 + GFF893 0.32 -1.4
130,561 + GFF893 0.32 -1.2
130,561 + GFF893 0.32 -1.3
130,561 + GFF893 0.32 -1.3
130,561 + GFF893 0.32 +0.5
130,561 + GFF893 0.32 +0.8
130,562 - GFF893 0.32 +0.5
130,562 - GFF893 0.32 -0.9
130,562 - GFF893 0.32 -0.1
130,562 - GFF893 0.32 -1.1
130,562 - GFF893 0.32 -1.1
130,562 - GFF893 0.32 -1.0
130,562 - GFF893 0.32 -1.5
130,562 - GFF893 0.32 +0.5
130,562 - GFF893 0.32 +0.8
130,562 - GFF893 0.32 +0.1
130,562 - GFF893 0.32 -1.8
130,562 - GFF893 0.32 -0.8
130,562 - GFF893 0.32 -0.8
130,565 + GFF893 0.32 -0.8
130,565 + GFF893 0.32 -0.1
130,566 - GFF893 0.32 +0.5
130,592 + GFF893 0.35 -0.8
130,593 - GFF893 0.35 -0.2
130,593 - GFF893 0.35 -1.8
130,593 - GFF893 0.35 -1.4
130,621 - GFF893 0.39 -1.3
130,675 - GFF893 0.45 -1.2
130,675 - GFF893 0.45 -0.1
130,675 - GFF893 0.45 -1.1
130,675 - GFF893 0.45 +0.2
130,675 - GFF893 0.45 +0.5
130,675 - GFF893 0.45 -1.0
130,675 - GFF893 0.45 -1.0
130,677 + GFF893 0.45 +1.2
130,678 - GFF893 0.45 +0.8
130,678 - GFF893 0.45 -0.1
130,747 + GFF893 0.52 -1.0
130,748 - GFF893 0.53 -0.3
130,780 - GFF893 0.56 -0.9
130,780 - GFF893 0.56 +0.8
130,813 + GFF893 0.60 -1.1
130,851 + GFF893 0.64 -0.8
130,886 + GFF893 0.68 -0.1
130,938 + GFF893 0.74 -2.3
130,939 - GFF893 0.74 +0.5
130,939 - GFF893 0.74 +0.3
130,939 - GFF893 0.74 +0.9
130,939 - GFF893 0.74 -0.8
130,939 - GFF893 0.74 -0.4
130,939 - GFF893 0.74 +0.2
130,972 + GFF893 0.77 -1.4
130,973 - GFF893 0.78 -1.9
130,973 - GFF893 0.78 -1.4
130,973 - GFF893 0.78 -1.2
130,973 - GFF893 0.78 -0.8
130,973 - GFF893 0.78 -1.4
130,973 - GFF893 0.78 -2.1
130,973 - GFF893 0.78 -0.5
130,973 - GFF893 0.78 -0.1
130,973 - GFF893 0.78 +1.5
131,016 + GFF893 0.82 -0.4
131,017 - GFF893 0.82 -0.1
131,075 + GFF893 0.89 -1.6
131,075 + GFF893 0.89 -0.8
131,076 - GFF893 0.89 -1.1
131,076 - GFF893 0.89 +0.2
131,076 - GFF893 0.89 +0.7
131,076 - GFF893 0.89 -0.9
131,076 - GFF893 0.89 -1.6
131,157 + -0.8
131,157 + +1.5
131,157 + -1.7
131,158 - -0.4
131,158 - -1.3
131,158 - -0.4
131,158 - -0.5
131,158 - -0.5
131,158 - -1.6
131,158 - -0.2
131,158 - -1.0
131,158 - -0.8
131,158 - +0.2
131,158 - -0.8
131,161 + -1.0
131,161 + -0.5
131,161 + -1.1
131,161 + -0.5
131,161 + -0.8
131,162 - -1.1
131,162 - -0.6
131,162 - +0.1
131,176 + -1.0
131,177 - -0.2
131,177 - -0.4
131,177 - +0.5
131,192 - -0.6
131,192 - -1.0
131,192 - -0.6

Or see this region's nucleotide sequence