Experiment: D-Glucose and Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF189 and GFF190 are separated by 111 nucleotides GFF190 and GFF191 are separated by 67 nucleotides GFF191 and GFF192 are separated by 104 nucleotides GFF192 and GFF193 are separated by 150 nucleotides
GFF189 - hypothetical protein, at 187,194 to 188,303
GFF189
GFF190 - Chemotaxis protein CheW, at 188,415 to 188,918
GFF190
GFF191 - NADPH dehydrogenase, at 188,986 to 190,101
GFF191
GFF192 - hypothetical protein, at 190,206 to 190,520
GFF192
GFF193 - hypothetical protein, at 190,671 to 192,203
GFF193
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.005 kb on - strand, within GFF189 at 188.005 kb on - strand, within GFF189 at 188.040 kb on + strand, within GFF189 at 188.040 kb on + strand, within GFF189 at 188.041 kb on - strand, within GFF189 at 188.041 kb on - strand, within GFF189 at 188.041 kb on - strand, within GFF189 at 188.041 kb on - strand, within GFF189 at 188.047 kb on - strand, within GFF189 at 188.047 kb on - strand, within GFF189 at 188.083 kb on - strand, within GFF189 at 188.083 kb on - strand, within GFF189 at 188.085 kb on + strand, within GFF189 at 188.085 kb on + strand, within GFF189 at 188.086 kb on - strand, within GFF189 at 188.086 kb on - strand, within GFF189 at 188.086 kb on - strand, within GFF189 at 188.135 kb on + strand, within GFF189 at 188.166 kb on + strand, within GFF189 at 188.166 kb on + strand, within GFF189 at 188.168 kb on + strand, within GFF189 at 188.168 kb on + strand, within GFF189 at 188.168 kb on + strand, within GFF189 at 188.292 kb on - strand at 188.301 kb on + strand at 188.302 kb on - strand at 188.302 kb on - strand at 188.313 kb on + strand at 188.369 kb on + strand at 188.369 kb on + strand at 188.370 kb on - strand at 188.390 kb on + strand at 188.390 kb on + strand at 188.390 kb on + strand at 188.391 kb on - strand at 188.391 kb on - strand at 188.391 kb on - strand at 188.391 kb on - strand at 188.391 kb on - strand at 188.402 kb on + strand at 188.402 kb on + strand at 188.403 kb on - strand at 188.414 kb on + strand at 188.415 kb on - strand at 188.435 kb on + strand at 188.478 kb on + strand, within GFF190 at 188.489 kb on + strand, within GFF190 at 188.530 kb on + strand, within GFF190 at 188.531 kb on - strand, within GFF190 at 188.585 kb on + strand, within GFF190 at 188.585 kb on + strand, within GFF190 at 188.624 kb on + strand, within GFF190 at 188.640 kb on - strand, within GFF190 at 188.640 kb on - strand, within GFF190 at 188.642 kb on + strand, within GFF190 at 188.667 kb on + strand, within GFF190 at 188.667 kb on + strand, within GFF190 at 188.668 kb on - strand, within GFF190 at 188.691 kb on - strand, within GFF190 at 188.738 kb on - strand, within GFF190 at 188.757 kb on + strand, within GFF190 at 188.757 kb on + strand, within GFF190 at 188.758 kb on - strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.811 kb on + strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.812 kb on - strand, within GFF190 at 188.850 kb on - strand, within GFF190 at 188.963 kb on + strand at 188.963 kb on + strand at 188.963 kb on + strand at 188.964 kb on - strand at 188.964 kb on - strand at 188.964 kb on - strand at 188.967 kb on + strand at 189.018 kb on - strand at 189.018 kb on - strand at 189.095 kb on + strand at 189.277 kb on - strand, within GFF191 at 189.277 kb on - strand, within GFF191 at 189.277 kb on - strand, within GFF191 at 189.294 kb on + strand, within GFF191 at 189.295 kb on - strand, within GFF191 at 189.392 kb on + strand, within GFF191 at 189.393 kb on - strand, within GFF191 at 189.393 kb on - strand, within GFF191 at 189.472 kb on - strand, within GFF191 at 189.504 kb on - strand, within GFF191 at 189.504 kb on - strand, within GFF191 at 189.523 kb on - strand, within GFF191 at 189.554 kb on + strand, within GFF191 at 189.554 kb on + strand, within GFF191 at 189.555 kb on - strand, within GFF191 at 189.555 kb on - strand, within GFF191 at 189.555 kb on - strand, within GFF191 at 189.555 kb on - strand, within GFF191 at 189.903 kb on + strand, within GFF191 at 189.903 kb on + strand, within GFF191 at 189.904 kb on - strand, within GFF191 at 189.922 kb on + strand, within GFF191 at 190.022 kb on + strand at 190.022 kb on + strand at 190.023 kb on - strand at 190.023 kb on - strand at 190.023 kb on - strand at 190.057 kb on + strand at 190.073 kb on - strand at 190.102 kb on - strand at 190.102 kb on - strand at 190.176 kb on + strand at 190.189 kb on + strand at 190.190 kb on - strand at 190.190 kb on - strand at 190.190 kb on - strand at 190.190 kb on - strand at 190.194 kb on + strand at 190.218 kb on - strand at 190.231 kb on + strand at 190.231 kb on + strand at 190.248 kb on - strand, within GFF192 at 190.248 kb on - strand, within GFF192 at 190.260 kb on + strand, within GFF192 at 190.260 kb on + strand, within GFF192 at 190.260 kb on + strand, within GFF192 at 190.260 kb on + strand, within GFF192 at 190.260 kb on + strand, within GFF192 at 190.261 kb on - strand, within GFF192 at 190.261 kb on - strand, within GFF192 at 190.480 kb on + strand, within GFF192 at 190.495 kb on + strand at 190.495 kb on + strand at 190.495 kb on + strand at 190.496 kb on - strand at 190.554 kb on + strand at 190.554 kb on + strand at 190.554 kb on + strand at 190.554 kb on + strand at 190.555 kb on - strand at 190.555 kb on - strand at 190.555 kb on - strand at 190.555 kb on - strand at 190.555 kb on - strand at 190.555 kb on - strand at 190.574 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.656 kb on - strand at 190.660 kb on + strand at 190.660 kb on + strand at 190.660 kb on + strand at 190.670 kb on + strand at 190.671 kb on - strand at 190.671 kb on - strand at 190.809 kb on + strand at 190.809 kb on + strand at 190.809 kb on + strand at 190.809 kb on + strand at 190.822 kb on + strand at 190.822 kb on + strand at 190.822 kb on + strand at 190.823 kb on - strand at 190.921 kb on - strand, within GFF193 at 190.932 kb on + strand, within GFF193 at 190.932 kb on + strand, within GFF193 at 190.932 kb on + strand, within GFF193 at 190.932 kb on + strand, within GFF193 at 190.933 kb on - strand, within GFF193 at 190.949 kb on + strand, within GFF193 at 190.964 kb on - strand, within GFF193 at 190.966 kb on + strand, within GFF193 at 190.966 kb on + strand, within GFF193 at 190.966 kb on + strand, within GFF193 at 191.003 kb on + strand, within GFF193 at 191.004 kb on - strand, within GFF193 at 191.009 kb on + strand, within GFF193 at 191.009 kb on + strand, within GFF193 at 191.010 kb on - strand, within GFF193 at 191.041 kb on + strand, within GFF193 at 191.056 kb on + strand, within GFF193 at 191.062 kb on + strand, within GFF193 at 191.062 kb on + strand, within GFF193 at 191.062 kb on + strand, within GFF193 at 191.062 kb on + strand, within GFF193 at 191.063 kb on - strand, within GFF193 at 191.063 kb on - strand, within GFF193 at 191.087 kb on + strand, within GFF193
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C) remove 188,005 - GFF189 0.73 +0.5 188,005 - GFF189 0.73 +0.2 188,040 + GFF189 0.76 -0.1 188,040 + GFF189 0.76 -1.3 188,041 - GFF189 0.76 -0.5 188,041 - GFF189 0.76 +0.0 188,041 - GFF189 0.76 +0.2 188,041 - GFF189 0.76 +0.0 188,047 - GFF189 0.77 +0.0 188,047 - GFF189 0.77 -2.2 188,083 - GFF189 0.80 +0.4 188,083 - GFF189 0.80 -0.5 188,085 + GFF189 0.80 -1.1 188,085 + GFF189 0.80 -0.9 188,086 - GFF189 0.80 -1.2 188,086 - GFF189 0.80 -1.1 188,086 - GFF189 0.80 -0.3 188,135 + GFF189 0.85 -0.6 188,166 + GFF189 0.88 -1.2 188,166 + GFF189 0.88 -0.6 188,168 + GFF189 0.88 +0.6 188,168 + GFF189 0.88 -0.1 188,168 + GFF189 0.88 -0.6 188,292 - -1.0 188,301 + -0.1 188,302 - -0.8 188,302 - -0.3 188,313 + +0.4 188,369 + -1.2 188,369 + -0.1 188,370 - +0.2 188,390 + -0.9 188,390 + +0.8 188,390 + -0.1 188,391 - -2.3 188,391 - -0.9 188,391 - +0.4 188,391 - -0.8 188,391 - -1.1 188,402 + +1.2 188,402 + +0.8 188,403 - +0.2 188,414 + -0.1 188,415 - -0.8 188,435 + -0.8 188,478 + GFF190 0.12 +0.2 188,489 + GFF190 0.15 -0.6 188,530 + GFF190 0.23 +0.1 188,531 - GFF190 0.23 -0.6 188,585 + GFF190 0.34 -1.0 188,585 + GFF190 0.34 -0.3 188,624 + GFF190 0.41 -0.7 188,640 - GFF190 0.45 -0.8 188,640 - GFF190 0.45 -1.0 188,642 + GFF190 0.45 +0.1 188,667 + GFF190 0.50 -1.9 188,667 + GFF190 0.50 -0.4 188,668 - GFF190 0.50 +0.5 188,691 - GFF190 0.55 -0.3 188,738 - GFF190 0.64 -1.1 188,757 + GFF190 0.68 -0.3 188,757 + GFF190 0.68 +0.8 188,758 - GFF190 0.68 -0.8 188,811 + GFF190 0.79 -0.4 188,811 + GFF190 0.79 +0.1 188,811 + GFF190 0.79 -1.4 188,811 + GFF190 0.79 -0.8 188,811 + GFF190 0.79 -0.2 188,811 + GFF190 0.79 -0.8 188,812 - GFF190 0.79 +0.7 188,812 - GFF190 0.79 -1.1 188,812 - GFF190 0.79 +0.9 188,812 - GFF190 0.79 +1.2 188,812 - GFF190 0.79 +0.4 188,812 - GFF190 0.79 -0.9 188,812 - GFF190 0.79 +0.2 188,850 - GFF190 0.86 -1.6 188,963 + -0.3 188,963 + +0.8 188,963 + -0.7 188,964 - +0.2 188,964 - -0.7 188,964 - +0.1 188,967 + -0.6 189,018 - -1.0 189,018 - -0.4 189,095 + +0.4 189,277 - GFF191 0.26 -0.7 189,277 - GFF191 0.26 -1.1 189,277 - GFF191 0.26 -1.1 189,294 + GFF191 0.28 -1.3 189,295 - GFF191 0.28 -0.8 189,392 + GFF191 0.36 -1.0 189,393 - GFF191 0.36 +0.2 189,393 - GFF191 0.36 +0.8 189,472 - GFF191 0.44 -0.5 189,504 - GFF191 0.46 +1.8 189,504 - GFF191 0.46 -1.3 189,523 - GFF191 0.48 +0.2 189,554 + GFF191 0.51 -0.8 189,554 + GFF191 0.51 -0.8 189,555 - GFF191 0.51 -1.1 189,555 - GFF191 0.51 -1.8 189,555 - GFF191 0.51 -0.3 189,555 - GFF191 0.51 -1.3 189,903 + GFF191 0.82 -0.8 189,903 + GFF191 0.82 -1.1 189,904 - GFF191 0.82 -2.2 189,922 + GFF191 0.84 +0.2 190,022 + +0.7 190,022 + -1.6 190,023 - -1.1 190,023 - -1.1 190,023 - +0.7 190,057 + -0.1 190,073 - -1.1 190,102 - -0.3 190,102 - -0.7 190,176 + -0.5 190,189 + -0.6 190,190 - +0.5 190,190 - -0.1 190,190 - -1.3 190,190 - +0.2 190,194 + -1.6 190,218 - +0.2 190,231 + -1.1 190,231 + -1.2 190,248 - GFF192 0.13 -1.1 190,248 - GFF192 0.13 -0.1 190,260 + GFF192 0.17 -1.5 190,260 + GFF192 0.17 -1.6 190,260 + GFF192 0.17 -1.1 190,260 + GFF192 0.17 -1.1 190,260 + GFF192 0.17 -0.8 190,261 - GFF192 0.17 -1.3 190,261 - GFF192 0.17 -0.2 190,480 + GFF192 0.87 -1.3 190,495 + +0.2 190,495 + -0.8 190,495 + -0.2 190,496 - -1.1 190,554 + -1.1 190,554 + -0.9 190,554 + -0.0 190,554 + +1.0 190,555 - -0.8 190,555 - -1.5 190,555 - -0.8 190,555 - +0.0 190,555 - -0.8 190,555 - -1.5 190,574 + -0.1 190,655 + -1.5 190,655 + -0.9 190,655 + -1.1 190,655 + -0.6 190,655 + -0.8 190,656 - -1.2 190,660 + +0.1 190,660 + -0.8 190,660 + -0.7 190,670 + +0.1 190,671 - -0.3 190,671 - +0.2 190,809 + -1.1 190,809 + -0.3 190,809 + +0.2 190,809 + -0.8 190,822 + -0.1 190,822 + -0.8 190,822 + -1.1 190,823 - +0.2 190,921 - GFF193 0.16 +0.9 190,932 + GFF193 0.17 -0.6 190,932 + GFF193 0.17 -0.1 190,932 + GFF193 0.17 -2.6 190,932 + GFF193 0.17 -0.3 190,933 - GFF193 0.17 -0.6 190,949 + GFF193 0.18 +0.2 190,964 - GFF193 0.19 -1.0 190,966 + GFF193 0.19 -1.1 190,966 + GFF193 0.19 -0.3 190,966 + GFF193 0.19 -0.8 191,003 + GFF193 0.22 -0.2 191,004 - GFF193 0.22 -0.1 191,009 + GFF193 0.22 -1.6 191,009 + GFF193 0.22 -1.2 191,010 - GFF193 0.22 -1.3 191,041 + GFF193 0.24 -1.6 191,056 + GFF193 0.25 +0.8 191,062 + GFF193 0.26 -0.7 191,062 + GFF193 0.26 -1.8 191,062 + GFF193 0.26 -0.9 191,062 + GFF193 0.26 -0.5 191,063 - GFF193 0.26 -0.8 191,063 - GFF193 0.26 -1.2 191,087 + GFF193 0.27 -0.1
Or see this region's nucleotide sequence