Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06981

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06980 and MPMX19_06981 are separated by 19 nucleotidesMPMX19_06981 and MPMX19_06982 are separated by 65 nucleotides MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355 _06980 MPMX19_06981: MPMX19_06981 - hypothetical protein, at 262,375 to 263,358 _06981 MPMX19_06982: MPMX19_06982 - Aldehyde dehydrogenase, thermostable, at 263,424 to 264,878 _06982 Position (kb) 262 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1at 261.516 kb on + strand, within MPMX19_06980at 261.516 kb on + strand, within MPMX19_06980at 261.516 kb on + strand, within MPMX19_06980at 261.516 kb on + strand, within MPMX19_06980at 261.517 kb on - strand, within MPMX19_06980at 261.517 kb on - strand, within MPMX19_06980at 261.754 kb on - strand, within MPMX19_06980at 261.754 kb on - strand, within MPMX19_06980at 261.825 kb on + strand, within MPMX19_06980at 261.825 kb on + strand, within MPMX19_06980at 261.825 kb on + strand, within MPMX19_06980at 261.825 kb on + strand, within MPMX19_06980at 261.826 kb on - strand, within MPMX19_06980at 262.117 kb on - strand, within MPMX19_06980at 262.117 kb on - strand, within MPMX19_06980at 262.170 kb on + strandat 262.170 kb on + strandat 262.171 kb on - strandat 262.171 kb on - strandat 262.251 kb on + strandat 262.251 kb on + strandat 262.252 kb on - strandat 262.252 kb on - strandat 262.252 kb on - strandat 262.252 kb on - strandat 262.391 kb on + strandat 262.426 kb on + strandat 262.426 kb on + strandat 262.426 kb on + strandat 262.427 kb on - strandat 262.427 kb on - strandat 262.427 kb on - strandat 262.699 kb on + strand, within MPMX19_06981at 262.699 kb on + strand, within MPMX19_06981at 262.699 kb on + strand, within MPMX19_06981at 262.699 kb on + strand, within MPMX19_06981at 262.699 kb on + strand, within MPMX19_06981at 262.699 kb on + strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 262.700 kb on - strand, within MPMX19_06981at 263.536 kb on - strandat 263.536 kb on - strandat 263.536 kb on - strandat 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.262 kb on - strand, within MPMX19_06982

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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261,516 + MPMX19_06980 0.57 -0.8
261,516 + MPMX19_06980 0.57 -0.3
261,516 + MPMX19_06980 0.57 +0.5
261,516 + MPMX19_06980 0.57 -0.1
261,517 - MPMX19_06980 0.57 +0.3
261,517 - MPMX19_06980 0.57 +0.1
261,754 - MPMX19_06980 0.69 -1.0
261,754 - MPMX19_06980 0.69 -0.2
261,825 + MPMX19_06980 0.73 -0.6
261,825 + MPMX19_06980 0.73 +0.2
261,825 + MPMX19_06980 0.73 +1.2
261,825 + MPMX19_06980 0.73 -0.7
261,826 - MPMX19_06980 0.73 +0.4
262,117 - MPMX19_06980 0.88 -0.0
262,117 - MPMX19_06980 0.88 -1.0
262,170 + +0.9
262,170 + -0.0
262,171 - -0.8
262,171 - -0.9
262,251 + -1.9
262,251 + -0.0
262,252 - +0.1
262,252 - -3.3
262,252 - -1.4
262,252 - +0.7
262,391 + -0.2
262,426 + -1.4
262,426 + -1.2
262,426 + +0.2
262,427 - -0.6
262,427 - -0.4
262,427 - -0.3
262,699 + MPMX19_06981 0.33 +0.5
262,699 + MPMX19_06981 0.33 -0.4
262,699 + MPMX19_06981 0.33 -0.7
262,699 + MPMX19_06981 0.33 -1.1
262,699 + MPMX19_06981 0.33 +1.2
262,699 + MPMX19_06981 0.33 +0.7
262,700 - MPMX19_06981 0.33 +0.1
262,700 - MPMX19_06981 0.33 -0.9
262,700 - MPMX19_06981 0.33 -0.3
262,700 - MPMX19_06981 0.33 +0.4
262,700 - MPMX19_06981 0.33 +1.2
262,700 - MPMX19_06981 0.33 -0.9
262,700 - MPMX19_06981 0.33 +0.2
263,536 - -0.0
263,536 - -0.4
263,536 - +1.0
264,261 + MPMX19_06982 0.58 -0.0
264,261 + MPMX19_06982 0.58 -1.2
264,261 + MPMX19_06982 0.58 +0.5
264,261 + MPMX19_06982 0.58 -0.3
264,262 - MPMX19_06982 0.58 +0.7

Or see this region's nucleotide sequence