Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06958 and MPMX19_06959 are separated by 164 nucleotides MPMX19_06959 and MPMX19_06960 are separated by 48 nucleotides
MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931
_06958
MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325
_06959
MPMX19_06960: MPMX19_06960 - Urocanate reductase, at 236,374 to 237,855
_06960
Position (kb) 235
236
237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.826 kb on - strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.038 kb on - strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.050 kb on - strand at 235.059 kb on + strand at 235.059 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.230 kb on - strand, within MPMX19_06959 at 235.382 kb on + strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.398 kb on - strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.787 kb on + strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 236.036 kb on + strand, within MPMX19_06959 at 236.036 kb on + strand, within MPMX19_06959 at 236.037 kb on - strand, within MPMX19_06959 at 236.237 kb on + strand at 236.237 kb on + strand at 236.338 kb on - strand at 236.343 kb on + strand at 236.344 kb on - strand at 236.365 kb on + strand at 236.365 kb on + strand at 236.365 kb on + strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.458 kb on - strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.471 kb on + strand at 236.498 kb on + strand at 236.498 kb on + strand at 236.499 kb on - strand at 236.726 kb on + strand, within MPMX19_06960 at 236.727 kb on - strand, within MPMX19_06960 at 236.727 kb on - strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.994 kb on - strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.125 kb on + strand, within MPMX19_06960 at 237.125 kb on + strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.129 kb on - strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 234,216 + MPMX19_06958 0.34 -0.3 234,216 + MPMX19_06958 0.34 -1.5 234,216 + MPMX19_06958 0.34 +0.3 234,216 + MPMX19_06958 0.34 +1.0 234,216 + MPMX19_06958 0.34 -1.0 234,216 + MPMX19_06958 0.34 -1.4 234,217 - MPMX19_06958 0.34 -0.8 234,217 - MPMX19_06958 0.34 -0.3 234,217 - MPMX19_06958 0.34 -0.2 234,217 - MPMX19_06958 0.34 +1.3 234,217 - MPMX19_06958 0.34 -0.3 234,217 - MPMX19_06958 0.34 -0.0 234,217 - MPMX19_06958 0.34 -1.2 234,217 - MPMX19_06958 0.34 +1.0 234,468 + MPMX19_06958 0.57 -0.0 234,468 + MPMX19_06958 0.57 -1.0 234,469 - MPMX19_06958 0.57 -1.4 234,469 - MPMX19_06958 0.57 -0.3 234,826 - -0.9 235,031 + -0.3 235,031 + -1.4 235,031 + -0.0 235,032 - +0.1 235,032 - +0.5 235,032 - -1.2 235,032 - -0.3 235,032 - -1.5 235,033 + -1.4 235,033 + -1.7 235,033 + -0.5 235,033 + -0.8 235,033 + +0.4 235,033 + -1.4 235,033 + -0.3 235,033 + -1.7 235,033 + -2.4 235,033 + -1.0 235,034 - -0.9 235,034 - -0.8 235,034 - -0.5 235,034 - +0.5 235,034 - +0.1 235,034 - +0.5 235,034 - +0.3 235,034 - +0.6 235,034 - -1.9 235,034 - -1.0 235,034 - +2.0 235,037 + -1.2 235,037 + -1.3 235,037 + -0.6 235,037 + -1.0 235,037 + -1.3 235,037 + +0.2 235,037 + -3.0 235,037 + -1.2 235,037 + -1.7 235,038 - +1.1 235,049 + +0.2 235,049 + -0.8 235,049 + -1.7 235,050 - -0.2 235,059 + -1.0 235,059 + -0.0 235,097 + +0.2 235,097 + -0.1 235,097 + -0.3 235,097 + +0.1 235,097 + -0.6 235,097 + -0.6 235,097 + -0.7 235,097 + -1.3 235,097 + -0.1 235,098 - -1.4 235,098 - +0.2 235,098 - -0.3 235,178 + +1.5 235,178 + -0.5 235,178 + -1.7 235,178 + -0.3 235,178 + -1.1 235,178 + -0.5 235,178 + -1.6 235,178 + -0.7 235,178 + -0.3 235,178 + +0.0 235,178 + -0.5 235,179 - -1.5 235,179 - +0.5 235,179 - -3.8 235,179 - -1.5 235,179 - -0.2 235,179 - -1.9 235,179 - -0.6 235,181 + +1.0 235,181 + +0.0 235,181 + -0.2 235,182 - +0.2 235,182 - -1.0 235,182 - -0.0 235,229 + MPMX19_06959 0.11 +0.9 235,229 + MPMX19_06959 0.11 -0.3 235,229 + MPMX19_06959 0.11 -0.3 235,229 + MPMX19_06959 0.11 -1.5 235,230 - MPMX19_06959 0.11 -0.5 235,382 + MPMX19_06959 0.23 +0.5 235,383 - MPMX19_06959 0.23 -1.3 235,383 - MPMX19_06959 0.23 +0.2 235,397 + MPMX19_06959 0.24 -1.5 235,397 + MPMX19_06959 0.24 -0.5 235,398 - MPMX19_06959 0.25 +1.5 235,472 + MPMX19_06959 0.31 -0.0 235,472 + MPMX19_06959 0.31 +1.0 235,472 + MPMX19_06959 0.31 -0.1 235,473 - MPMX19_06959 0.31 -0.3 235,473 - MPMX19_06959 0.31 +0.1 235,473 - MPMX19_06959 0.31 +0.2 235,473 - MPMX19_06959 0.31 -0.3 235,787 + MPMX19_06959 0.56 -1.2 235,788 - MPMX19_06959 0.56 -0.5 235,788 - MPMX19_06959 0.56 +1.2 235,788 - MPMX19_06959 0.56 +1.1 235,806 - MPMX19_06959 0.58 -1.5 235,806 - MPMX19_06959 0.58 +1.3 235,806 - MPMX19_06959 0.58 +0.4 235,806 - MPMX19_06959 0.58 -0.3 235,806 - MPMX19_06959 0.58 -1.2 235,862 + MPMX19_06959 0.62 -0.1 235,862 + MPMX19_06959 0.62 -0.4 235,862 + MPMX19_06959 0.62 +0.0 235,863 - MPMX19_06959 0.62 +0.4 235,863 - MPMX19_06959 0.62 -0.9 235,871 + MPMX19_06959 0.63 -1.0 235,871 + MPMX19_06959 0.63 +0.2 235,871 + MPMX19_06959 0.63 -1.9 235,871 + MPMX19_06959 0.63 -0.1 235,871 + MPMX19_06959 0.63 -0.9 235,872 - MPMX19_06959 0.63 +0.2 235,872 - MPMX19_06959 0.63 -0.9 236,036 + MPMX19_06959 0.76 +1.2 236,036 + MPMX19_06959 0.76 -0.1 236,037 - MPMX19_06959 0.77 -1.5 236,237 + -0.9 236,237 + -1.9 236,338 - +0.0 236,343 + -1.5 236,344 - +0.5 236,365 + -1.7 236,365 + -0.6 236,365 + -0.5 236,366 - -0.0 236,366 - -0.5 236,366 - -0.7 236,366 - -0.9 236,366 - -0.3 236,458 - -1.3 236,459 + +0.4 236,459 + +1.1 236,459 + -0.5 236,459 + +1.2 236,459 + +0.1 236,460 - -0.3 236,460 - +0.8 236,460 - +0.4 236,460 - -0.3 236,460 - -0.4 236,460 - -1.9 236,471 + +2.5 236,498 + -1.3 236,498 + +0.6 236,499 - -1.5 236,726 + MPMX19_06960 0.24 +1.5 236,727 - MPMX19_06960 0.24 -0.7 236,727 - MPMX19_06960 0.24 -0.6 236,876 + MPMX19_06960 0.34 -0.5 236,876 + MPMX19_06960 0.34 -0.0 236,876 + MPMX19_06960 0.34 +1.1 236,876 + MPMX19_06960 0.34 -0.5 236,876 + MPMX19_06960 0.34 -0.0 236,876 + MPMX19_06960 0.34 +0.4 236,877 - MPMX19_06960 0.34 -0.9 236,877 - MPMX19_06960 0.34 -1.2 236,877 - MPMX19_06960 0.34 -0.8 236,877 - MPMX19_06960 0.34 -1.4 236,877 - MPMX19_06960 0.34 -0.8 236,877 - MPMX19_06960 0.34 +1.3 236,877 - MPMX19_06960 0.34 -1.5 236,924 + MPMX19_06960 0.37 -1.4 236,924 + MPMX19_06960 0.37 -0.6 236,924 + MPMX19_06960 0.37 -0.2 236,924 + MPMX19_06960 0.37 -2.1 236,924 + MPMX19_06960 0.37 -0.3 236,924 + MPMX19_06960 0.37 -1.5 236,924 + MPMX19_06960 0.37 -0.5 236,925 - MPMX19_06960 0.37 -1.2 236,925 - MPMX19_06960 0.37 -1.8 236,925 - MPMX19_06960 0.37 -1.2 236,925 - MPMX19_06960 0.37 -0.2 236,925 - MPMX19_06960 0.37 -0.7 236,925 - MPMX19_06960 0.37 +0.2 236,925 - MPMX19_06960 0.37 -0.6 236,925 - MPMX19_06960 0.37 -0.6 236,925 - MPMX19_06960 0.37 -0.8 236,925 - MPMX19_06960 0.37 +0.5 236,925 - MPMX19_06960 0.37 -0.0 236,925 - MPMX19_06960 0.37 -0.5 236,994 - MPMX19_06960 0.42 -0.7 237,056 + MPMX19_06960 0.46 -2.1 237,056 + MPMX19_06960 0.46 -0.9 237,056 + MPMX19_06960 0.46 +0.6 237,056 + MPMX19_06960 0.46 -0.5 237,056 + MPMX19_06960 0.46 -1.5 237,056 + MPMX19_06960 0.46 -1.3 237,056 + MPMX19_06960 0.46 -1.7 237,056 + MPMX19_06960 0.46 -1.3 237,056 + MPMX19_06960 0.46 -1.7 237,056 + MPMX19_06960 0.46 -2.5 237,056 + MPMX19_06960 0.46 -1.0 237,056 + MPMX19_06960 0.46 +0.5 237,057 - MPMX19_06960 0.46 -0.5 237,057 - MPMX19_06960 0.46 -0.8 237,057 - MPMX19_06960 0.46 +0.7 237,057 - MPMX19_06960 0.46 -0.5 237,057 - MPMX19_06960 0.46 +0.2 237,057 - MPMX19_06960 0.46 +0.5 237,057 - MPMX19_06960 0.46 +0.2 237,057 - MPMX19_06960 0.46 -1.5 237,057 - MPMX19_06960 0.46 -1.5 237,057 - MPMX19_06960 0.46 -0.5 237,125 + MPMX19_06960 0.51 +0.0 237,125 + MPMX19_06960 0.51 -1.1 237,126 - MPMX19_06960 0.51 -0.7 237,126 - MPMX19_06960 0.51 -2.4 237,126 - MPMX19_06960 0.51 -0.3 237,126 - MPMX19_06960 0.51 -0.9 237,126 - MPMX19_06960 0.51 -0.6 237,126 - MPMX19_06960 0.51 -0.9 237,126 - MPMX19_06960 0.51 +0.4 237,126 - MPMX19_06960 0.51 -0.0 237,126 - MPMX19_06960 0.51 +0.1 237,126 - MPMX19_06960 0.51 -0.1 237,129 - MPMX19_06960 0.51 -1.0 237,176 + MPMX19_06960 0.54 -2.2 237,176 + MPMX19_06960 0.54 -0.2 237,176 + MPMX19_06960 0.54 -1.6 237,177 - MPMX19_06960 0.54 -0.5 237,177 - MPMX19_06960 0.54 +1.0 237,177 - MPMX19_06960 0.54 -0.3
Or see this region's nucleotide sequence