Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06903

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06901 and MPMX19_06902 overlap by 4 nucleotidesMPMX19_06902 and MPMX19_06903 are separated by 87 nucleotidesMPMX19_06903 and MPMX19_06904 are separated by 239 nucleotidesMPMX19_06904 and MPMX19_06905 are separated by 40 nucleotides MPMX19_06901: MPMX19_06901 - Alpha-ketoglutaric semialdehyde dehydrogenase, at 176,039 to 177,466 _06901 MPMX19_06902: MPMX19_06902 - hypothetical protein, at 177,463 to 177,624 _06902 MPMX19_06903: MPMX19_06903 - Acetolactate synthase isozyme 2 large subunit, at 177,712 to 179,409 _06903 MPMX19_06904: MPMX19_06904 - putative tautomerase, at 179,649 to 179,840 _06904 MPMX19_06905: MPMX19_06905 - Transcriptional repressor IclR, at 179,881 to 180,717 _06905 Position (kb) 177 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 176.880 kb on - strand, within MPMX19_06901at 177.041 kb on - strand, within MPMX19_06901at 177.041 kb on - strand, within MPMX19_06901at 177.275 kb on - strand, within MPMX19_06901at 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.372 kb on + strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.373 kb on - strandat 177.681 kb on + strandat 177.681 kb on + strandat 177.951 kb on - strand, within MPMX19_06903at 178.026 kb on - strand, within MPMX19_06903at 178.026 kb on - strand, within MPMX19_06903at 178.142 kb on + strand, within MPMX19_06903at 178.337 kb on + strand, within MPMX19_06903at 178.337 kb on + strand, within MPMX19_06903at 178.338 kb on - strand, within MPMX19_06903at 178.467 kb on - strand, within MPMX19_06903at 178.544 kb on + strand, within MPMX19_06903at 178.655 kb on + strand, within MPMX19_06903at 178.655 kb on + strand, within MPMX19_06903at 178.656 kb on - strand, within MPMX19_06903at 178.866 kb on - strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.905 kb on + strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.906 kb on - strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.958 kb on + strand, within MPMX19_06903at 178.959 kb on - strand, within MPMX19_06903at 178.959 kb on - strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.033 kb on + strand, within MPMX19_06903at 179.309 kb on + strandat 179.310 kb on - strandat 179.310 kb on - strandat 179.310 kb on - strandat 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.779 kb on + strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.780 kb on - strand, within MPMX19_06904at 179.927 kb on + strandat 180.104 kb on + strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.290 kb on + strand, within MPMX19_06905at 180.291 kb on - strand, within MPMX19_06905at 180.350 kb on + strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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176,880 - MPMX19_06901 0.59 -0.0
177,041 - MPMX19_06901 0.70 +0.7
177,041 - MPMX19_06901 0.70 +0.3
177,275 - MPMX19_06901 0.87 +1.2
177,372 + -0.8
177,372 + -0.2
177,372 + -1.5
177,372 + +0.2
177,372 + +1.5
177,372 + -2.3
177,373 - -0.8
177,373 - +0.5
177,373 - -1.2
177,373 - +0.2
177,373 - -1.5
177,373 - -1.6
177,373 - +0.0
177,681 + -0.0
177,681 + -1.0
177,951 - MPMX19_06903 0.14 -0.0
178,026 - MPMX19_06903 0.18 +0.8
178,026 - MPMX19_06903 0.18 -1.2
178,142 + MPMX19_06903 0.25 -1.4
178,337 + MPMX19_06903 0.37 -0.6
178,337 + MPMX19_06903 0.37 +0.8
178,338 - MPMX19_06903 0.37 -0.2
178,467 - MPMX19_06903 0.44 -0.3
178,544 + MPMX19_06903 0.49 -0.3
178,655 + MPMX19_06903 0.56 +2.3
178,655 + MPMX19_06903 0.56 -1.7
178,656 - MPMX19_06903 0.56 -0.3
178,866 - MPMX19_06903 0.68 -0.8
178,905 + MPMX19_06903 0.70 -1.2
178,905 + MPMX19_06903 0.70 +1.0
178,905 + MPMX19_06903 0.70 +0.5
178,905 + MPMX19_06903 0.70 +1.4
178,906 - MPMX19_06903 0.70 -0.5
178,906 - MPMX19_06903 0.70 -0.2
178,906 - MPMX19_06903 0.70 -0.4
178,906 - MPMX19_06903 0.70 +0.4
178,906 - MPMX19_06903 0.70 -1.0
178,906 - MPMX19_06903 0.70 -0.0
178,958 + MPMX19_06903 0.73 +2.0
178,958 + MPMX19_06903 0.73 -1.2
178,958 + MPMX19_06903 0.73 -1.0
178,959 - MPMX19_06903 0.73 -0.3
178,959 - MPMX19_06903 0.73 -0.6
179,033 + MPMX19_06903 0.78 +0.4
179,033 + MPMX19_06903 0.78 -1.4
179,033 + MPMX19_06903 0.78 +1.2
179,033 + MPMX19_06903 0.78 -0.8
179,033 + MPMX19_06903 0.78 -1.5
179,309 + +1.2
179,310 - -0.6
179,310 - -0.3
179,310 - -0.9
179,779 + MPMX19_06904 0.68 -1.9
179,779 + MPMX19_06904 0.68 -0.3
179,779 + MPMX19_06904 0.68 -0.6
179,779 + MPMX19_06904 0.68 -1.9
179,780 - MPMX19_06904 0.68 -0.3
179,780 - MPMX19_06904 0.68 -0.3
179,780 - MPMX19_06904 0.68 -2.0
179,927 + +1.2
180,104 + MPMX19_06905 0.27 -0.8
180,105 - MPMX19_06905 0.27 -1.9
180,105 - MPMX19_06905 0.27 -0.6
180,173 + MPMX19_06905 0.35 +0.2
180,173 + MPMX19_06905 0.35 -0.0
180,174 - MPMX19_06905 0.35 +0.7
180,174 - MPMX19_06905 0.35 -1.4
180,174 - MPMX19_06905 0.35 -1.0
180,174 - MPMX19_06905 0.35 -0.0
180,182 + MPMX19_06905 0.36 -2.2
180,182 + MPMX19_06905 0.36 -1.0
180,182 + MPMX19_06905 0.36 +0.2
180,182 + MPMX19_06905 0.36 -0.3
180,182 + MPMX19_06905 0.36 -1.4
180,183 - MPMX19_06905 0.36 +0.7
180,183 - MPMX19_06905 0.36 -1.3
180,287 + MPMX19_06905 0.49 -1.4
180,287 + MPMX19_06905 0.49 +0.7
180,287 + MPMX19_06905 0.49 -0.8
180,287 + MPMX19_06905 0.49 -1.3
180,287 + MPMX19_06905 0.49 +0.5
180,287 + MPMX19_06905 0.49 -2.7
180,287 + MPMX19_06905 0.49 -0.4
180,287 + MPMX19_06905 0.49 -1.0
180,287 + MPMX19_06905 0.49 -0.3
180,287 + MPMX19_06905 0.49 +1.3
180,287 + MPMX19_06905 0.49 +0.8
180,287 + MPMX19_06905 0.49 +0.2
180,288 - MPMX19_06905 0.49 -0.6
180,288 - MPMX19_06905 0.49 +1.0
180,288 - MPMX19_06905 0.49 -0.8
180,288 - MPMX19_06905 0.49 -1.9
180,288 - MPMX19_06905 0.49 -0.3
180,288 - MPMX19_06905 0.49 -1.5
180,288 - MPMX19_06905 0.49 +1.0
180,288 - MPMX19_06905 0.49 +0.1
180,288 - MPMX19_06905 0.49 +0.8
180,288 - MPMX19_06905 0.49 -0.3
180,288 - MPMX19_06905 0.49 -1.0
180,288 - MPMX19_06905 0.49 +0.2
180,288 - MPMX19_06905 0.49 -0.7
180,288 - MPMX19_06905 0.49 -0.0
180,288 - MPMX19_06905 0.49 -1.4
180,288 - MPMX19_06905 0.49 -0.5
180,288 - MPMX19_06905 0.49 -0.9
180,290 + MPMX19_06905 0.49 +0.1
180,291 - MPMX19_06905 0.49 -0.6
180,350 + MPMX19_06905 0.56 -1.6
180,351 - MPMX19_06905 0.56 -0.3
180,351 - MPMX19_06905 0.56 -0.1
180,351 - MPMX19_06905 0.56 -0.8

Or see this region's nucleotide sequence