Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06896 and MPMX19_06897 are separated by 203 nucleotides MPMX19_06897 and MPMX19_06898 are separated by 43 nucleotides MPMX19_06898 and MPMX19_06899 overlap by 4 nucleotides
MPMX19_06896: MPMX19_06896 - L-aspartate oxidase, at 170,007 to 171,695
_06896
MPMX19_06897: MPMX19_06897 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 171,899 to 172,384
_06897
MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885
_06898
MPMX19_06899: MPMX19_06899 - hypothetical protein, at 173,882 to 174,973
_06899
Position (kb)
172
173
174 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 171.512 kb on - strand, within MPMX19_06896 at 171.512 kb on - strand, within MPMX19_06896 at 171.872 kb on + strand at 171.905 kb on - strand at 171.971 kb on + strand, within MPMX19_06897 at 171.971 kb on + strand, within MPMX19_06897 at 171.971 kb on + strand, within MPMX19_06897 at 171.971 kb on + strand, within MPMX19_06897 at 172.008 kb on - strand, within MPMX19_06897 at 172.280 kb on + strand, within MPMX19_06897 at 172.280 kb on + strand, within MPMX19_06897 at 172.280 kb on + strand, within MPMX19_06897 at 172.280 kb on + strand, within MPMX19_06897 at 172.280 kb on + strand, within MPMX19_06897 at 172.358 kb on + strand at 172.359 kb on - strand at 172.701 kb on + strand, within MPMX19_06898 at 172.701 kb on + strand, within MPMX19_06898 at 172.701 kb on + strand, within MPMX19_06898 at 172.701 kb on + strand, within MPMX19_06898 at 172.701 kb on + strand, within MPMX19_06898 at 172.701 kb on + strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.702 kb on - strand, within MPMX19_06898 at 172.855 kb on - strand, within MPMX19_06898 at 172.855 kb on - strand, within MPMX19_06898 at 172.855 kb on - strand, within MPMX19_06898 at 172.940 kb on - strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.196 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.316 kb on + strand, within MPMX19_06898 at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 173.799 kb on + strand at 174.299 kb on + strand, within MPMX19_06899 at 174.299 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.608 kb on + strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.609 kb on - strand, within MPMX19_06899 at 174.684 kb on - strand, within MPMX19_06899 at 174.684 kb on - strand, within MPMX19_06899
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 171,512 - MPMX19_06896 0.89 -1.2 171,512 - MPMX19_06896 0.89 -0.3 171,872 + +0.1 171,905 - -2.2 171,971 + MPMX19_06897 0.15 -0.6 171,971 + MPMX19_06897 0.15 -0.9 171,971 + MPMX19_06897 0.15 +0.4 171,971 + MPMX19_06897 0.15 +0.4 172,008 - MPMX19_06897 0.22 +0.1 172,280 + MPMX19_06897 0.78 -0.9 172,280 + MPMX19_06897 0.78 -0.6 172,280 + MPMX19_06897 0.78 -1.5 172,280 + MPMX19_06897 0.78 -2.2 172,280 + MPMX19_06897 0.78 -0.8 172,358 + -0.2 172,359 - +0.5 172,701 + MPMX19_06898 0.19 +0.8 172,701 + MPMX19_06898 0.19 -0.5 172,701 + MPMX19_06898 0.19 -0.8 172,701 + MPMX19_06898 0.19 +0.4 172,701 + MPMX19_06898 0.19 -0.7 172,701 + MPMX19_06898 0.19 -0.1 172,702 - MPMX19_06898 0.19 -0.7 172,702 - MPMX19_06898 0.19 +0.9 172,702 - MPMX19_06898 0.19 +0.2 172,702 - MPMX19_06898 0.19 -0.6 172,702 - MPMX19_06898 0.19 -1.4 172,702 - MPMX19_06898 0.19 +0.4 172,702 - MPMX19_06898 0.19 -1.1 172,702 - MPMX19_06898 0.19 -0.6 172,702 - MPMX19_06898 0.19 -0.6 172,702 - MPMX19_06898 0.19 -1.5 172,702 - MPMX19_06898 0.19 +1.1 172,702 - MPMX19_06898 0.19 -0.5 172,702 - MPMX19_06898 0.19 -0.6 172,702 - MPMX19_06898 0.19 -0.7 172,702 - MPMX19_06898 0.19 -1.7 172,702 - MPMX19_06898 0.19 +0.5 172,855 - MPMX19_06898 0.29 +0.1 172,855 - MPMX19_06898 0.29 -0.0 172,855 - MPMX19_06898 0.29 -1.1 172,940 - MPMX19_06898 0.35 +0.4 173,196 + MPMX19_06898 0.53 +0.6 173,196 + MPMX19_06898 0.53 -1.5 173,196 + MPMX19_06898 0.53 -1.2 173,196 + MPMX19_06898 0.53 +0.1 173,316 + MPMX19_06898 0.61 +1.3 173,316 + MPMX19_06898 0.61 +0.2 173,316 + MPMX19_06898 0.61 +0.1 173,316 + MPMX19_06898 0.61 -1.4 173,316 + MPMX19_06898 0.61 -0.8 173,316 + MPMX19_06898 0.61 +1.0 173,316 + MPMX19_06898 0.61 -0.3 173,799 + +0.8 173,799 + -0.7 173,799 + -0.0 173,799 + +0.2 173,799 + -0.9 173,799 + -1.3 173,799 + -0.8 174,299 + MPMX19_06899 0.38 +0.1 174,299 + MPMX19_06899 0.38 -1.4 174,608 + MPMX19_06899 0.66 -0.8 174,608 + MPMX19_06899 0.66 -0.9 174,608 + MPMX19_06899 0.66 -0.3 174,608 + MPMX19_06899 0.66 +0.1 174,608 + MPMX19_06899 0.66 -0.5 174,608 + MPMX19_06899 0.66 -0.5 174,608 + MPMX19_06899 0.66 -0.2 174,608 + MPMX19_06899 0.66 -0.6 174,608 + MPMX19_06899 0.66 +0.3 174,608 + MPMX19_06899 0.66 -1.3 174,608 + MPMX19_06899 0.66 -0.2 174,608 + MPMX19_06899 0.66 -0.0 174,608 + MPMX19_06899 0.66 -0.4 174,608 + MPMX19_06899 0.66 +0.7 174,608 + MPMX19_06899 0.66 -0.0 174,608 + MPMX19_06899 0.66 -3.0 174,608 + MPMX19_06899 0.66 -1.0 174,608 + MPMX19_06899 0.66 -0.6 174,608 + MPMX19_06899 0.66 -2.2 174,609 - MPMX19_06899 0.67 -0.6 174,609 - MPMX19_06899 0.67 +1.5 174,609 - MPMX19_06899 0.67 -0.3 174,609 - MPMX19_06899 0.67 -1.4 174,609 - MPMX19_06899 0.67 -0.6 174,609 - MPMX19_06899 0.67 -0.9 174,609 - MPMX19_06899 0.67 +1.5 174,609 - MPMX19_06899 0.67 -0.1 174,609 - MPMX19_06899 0.67 -1.5 174,609 - MPMX19_06899 0.67 -1.6 174,609 - MPMX19_06899 0.67 +0.7 174,609 - MPMX19_06899 0.67 -0.8 174,609 - MPMX19_06899 0.67 +1.0 174,609 - MPMX19_06899 0.67 -1.0 174,609 - MPMX19_06899 0.67 -1.4 174,684 - MPMX19_06899 0.73 -0.3 174,684 - MPMX19_06899 0.73 -0.8
Or see this region's nucleotide sequence