Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06847

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06846 and MPMX19_06847 are separated by 47 nucleotidesMPMX19_06847 and MPMX19_06848 are separated by 23 nucleotides MPMX19_06846: MPMX19_06846 - hypothetical protein, at 113,385 to 114,053 _06846 MPMX19_06847: MPMX19_06847 - Gamma-glutamylputrescine oxidoreductase, at 114,101 to 115,375 _06847 MPMX19_06848: MPMX19_06848 - hypothetical protein, at 115,399 to 116,682 _06848 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 113.127 kb on + strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.128 kb on - strandat 113.128 kb on - strandat 113.169 kb on - strandat 113.169 kb on - strandat 113.169 kb on - strandat 113.292 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.407 kb on - strandat 113.407 kb on - strandat 113.472 kb on + strand, within MPMX19_06846at 113.472 kb on + strand, within MPMX19_06846at 113.473 kb on - strand, within MPMX19_06846at 113.565 kb on + strand, within MPMX19_06846at 113.566 kb on - strand, within MPMX19_06846at 113.566 kb on - strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.610 kb on - strand, within MPMX19_06846at 113.610 kb on - strand, within MPMX19_06846at 113.649 kb on + strand, within MPMX19_06846at 113.649 kb on + strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.803 kb on - strand, within MPMX19_06846at 113.803 kb on - strand, within MPMX19_06846at 113.826 kb on + strand, within MPMX19_06846at 113.826 kb on + strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.994 kb on + strandat 113.994 kb on + strandat 113.995 kb on - strandat 113.995 kb on - strandat 113.997 kb on + strandat 113.998 kb on - strandat 113.998 kb on - strandat 113.998 kb on - strandat 114.003 kb on + strandat 114.003 kb on + strandat 114.004 kb on - strandat 114.004 kb on - strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.052 kb on - strandat 114.052 kb on - strandat 114.116 kb on + strandat 114.116 kb on + strandat 114.116 kb on + strandat 114.116 kb on + strandat 114.117 kb on - strandat 114.117 kb on - strandat 114.176 kb on + strandat 114.176 kb on + strandat 114.176 kb on + strandat 114.176 kb on + strandat 114.177 kb on - strandat 114.384 kb on - strand, within MPMX19_06847at 114.640 kb on + strand, within MPMX19_06847at 114.640 kb on + strand, within MPMX19_06847at 114.640 kb on + strand, within MPMX19_06847at 114.641 kb on - strand, within MPMX19_06847at 114.641 kb on - strand, within MPMX19_06847at 114.641 kb on - strand, within MPMX19_06847at 114.641 kb on - strand, within MPMX19_06847at 114.807 kb on - strand, within MPMX19_06847at 114.807 kb on - strand, within MPMX19_06847at 114.926 kb on + strand, within MPMX19_06847at 114.926 kb on + strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.927 kb on - strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.953 kb on + strand, within MPMX19_06847at 114.954 kb on - strand, within MPMX19_06847at 114.954 kb on - strand, within MPMX19_06847at 114.954 kb on - strand, within MPMX19_06847at 115.106 kb on + strand, within MPMX19_06847at 115.106 kb on + strand, within MPMX19_06847at 115.106 kb on + strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.107 kb on - strand, within MPMX19_06847at 115.178 kb on + strand, within MPMX19_06847at 115.178 kb on + strand, within MPMX19_06847at 115.179 kb on - strand, within MPMX19_06847at 115.190 kb on + strand, within MPMX19_06847at 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.282 kb on + strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.283 kb on - strandat 115.346 kb on + strandat 115.346 kb on + strandat 115.347 kb on - strandat 115.347 kb on - strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.349 kb on + strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.350 kb on - strandat 115.401 kb on - strandat 115.473 kb on - strandat 115.497 kb on - strandat 115.497 kb on - strandat 115.497 kb on - strandat 115.650 kb on - strand, within MPMX19_06848at 115.707 kb on - strand, within MPMX19_06848at 115.907 kb on + strand, within MPMX19_06848at 115.907 kb on + strand, within MPMX19_06848at 115.908 kb on - strand, within MPMX19_06848at 115.908 kb on - strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.145 kb on + strand, within MPMX19_06848at 116.145 kb on + strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.171 kb on + strand, within MPMX19_06848

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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113,127 + -0.3
113,127 + -0.3
113,127 + -0.5
113,128 - -0.5
113,128 - -0.0
113,169 - -0.4
113,169 - -1.8
113,169 - +1.5
113,292 + +0.5
113,406 + -1.8
113,406 + -0.9
113,406 + +0.8
113,406 + -1.3
113,406 + -0.2
113,407 - +0.1
113,407 - -1.5
113,472 + MPMX19_06846 0.13 -1.0
113,472 + MPMX19_06846 0.13 -0.0
113,473 - MPMX19_06846 0.13 -1.4
113,565 + MPMX19_06846 0.27 +1.0
113,566 - MPMX19_06846 0.27 -0.7
113,566 - MPMX19_06846 0.27 -0.5
113,609 + MPMX19_06846 0.33 +0.1
113,609 + MPMX19_06846 0.33 -0.5
113,609 + MPMX19_06846 0.33 +3.1
113,609 + MPMX19_06846 0.33 -0.8
113,610 - MPMX19_06846 0.34 -0.6
113,610 - MPMX19_06846 0.34 -1.6
113,649 + MPMX19_06846 0.39 -0.8
113,649 + MPMX19_06846 0.39 -0.2
113,650 - MPMX19_06846 0.40 -0.0
113,650 - MPMX19_06846 0.40 -0.0
113,650 - MPMX19_06846 0.40 -0.0
113,650 - MPMX19_06846 0.40 -0.2
113,802 + MPMX19_06846 0.62 +1.2
113,802 + MPMX19_06846 0.62 -0.0
113,802 + MPMX19_06846 0.62 -1.8
113,802 + MPMX19_06846 0.62 -0.6
113,803 - MPMX19_06846 0.62 +2.1
113,803 - MPMX19_06846 0.62 -0.5
113,826 + MPMX19_06846 0.66 -0.2
113,826 + MPMX19_06846 0.66 +1.0
113,827 - MPMX19_06846 0.66 +0.7
113,827 - MPMX19_06846 0.66 -0.3
113,827 - MPMX19_06846 0.66 -1.5
113,827 - MPMX19_06846 0.66 -1.9
113,827 - MPMX19_06846 0.66 -0.4
113,827 - MPMX19_06846 0.66 -1.7
113,827 - MPMX19_06846 0.66 -0.3
113,827 - MPMX19_06846 0.66 -0.1
113,827 - MPMX19_06846 0.66 +0.7
113,853 + MPMX19_06846 0.70 +0.4
113,853 + MPMX19_06846 0.70 -0.2
113,853 + MPMX19_06846 0.70 -2.5
113,854 - MPMX19_06846 0.70 -0.9
113,854 - MPMX19_06846 0.70 -1.1
113,854 - MPMX19_06846 0.70 -0.5
113,854 - MPMX19_06846 0.70 -0.6
113,854 - MPMX19_06846 0.70 -0.0
113,994 + -0.0
113,994 + +0.2
113,995 - -0.6
113,995 - -1.5
113,997 + -2.1
113,998 - -0.5
113,998 - -0.5
113,998 - -1.6
114,003 + +0.1
114,003 + -0.3
114,004 - -1.0
114,004 - -2.2
114,051 + -1.5
114,051 + -0.9
114,051 + +1.0
114,051 + +0.1
114,051 + -1.5
114,052 - -1.4
114,052 - -0.8
114,116 + -1.5
114,116 + -0.1
114,116 + -0.3
114,116 + +0.0
114,117 - -0.5
114,117 - -0.5
114,176 + +1.2
114,176 + -0.7
114,176 + -0.3
114,176 + +0.7
114,177 - -0.7
114,384 - MPMX19_06847 0.22 -1.4
114,640 + MPMX19_06847 0.42 +1.3
114,640 + MPMX19_06847 0.42 -0.5
114,640 + MPMX19_06847 0.42 -0.0
114,641 - MPMX19_06847 0.42 -0.8
114,641 - MPMX19_06847 0.42 -1.0
114,641 - MPMX19_06847 0.42 +1.3
114,641 - MPMX19_06847 0.42 +0.7
114,807 - MPMX19_06847 0.55 -0.0
114,807 - MPMX19_06847 0.55 -1.5
114,926 + MPMX19_06847 0.65 +0.4
114,926 + MPMX19_06847 0.65 -2.9
114,927 - MPMX19_06847 0.65 +0.4
114,927 - MPMX19_06847 0.65 -1.1
114,927 - MPMX19_06847 0.65 +0.7
114,927 - MPMX19_06847 0.65 -0.4
114,927 - MPMX19_06847 0.65 -1.5
114,927 - MPMX19_06847 0.65 -0.6
114,927 - MPMX19_06847 0.65 -1.6
114,953 + MPMX19_06847 0.67 -1.1
114,953 + MPMX19_06847 0.67 +0.8
114,953 + MPMX19_06847 0.67 -0.8
114,953 + MPMX19_06847 0.67 -0.0
114,953 + MPMX19_06847 0.67 -1.6
114,953 + MPMX19_06847 0.67 -0.0
114,954 - MPMX19_06847 0.67 +0.7
114,954 - MPMX19_06847 0.67 +1.2
114,954 - MPMX19_06847 0.67 +0.0
115,106 + MPMX19_06847 0.79 +1.0
115,106 + MPMX19_06847 0.79 -1.0
115,106 + MPMX19_06847 0.79 -0.9
115,107 - MPMX19_06847 0.79 +0.7
115,107 - MPMX19_06847 0.79 +0.0
115,107 - MPMX19_06847 0.79 +0.5
115,107 - MPMX19_06847 0.79 -0.3
115,107 - MPMX19_06847 0.79 +0.5
115,107 - MPMX19_06847 0.79 +0.2
115,107 - MPMX19_06847 0.79 +0.2
115,178 + MPMX19_06847 0.84 +1.3
115,178 + MPMX19_06847 0.84 -0.2
115,179 - MPMX19_06847 0.85 +2.5
115,190 + MPMX19_06847 0.85 -0.7
115,282 + -1.5
115,282 + -0.0
115,282 + -0.0
115,282 + -0.7
115,282 + -1.9
115,282 + -0.2
115,282 + -0.0
115,282 + -0.0
115,282 + +0.7
115,282 + -0.6
115,282 + +0.6
115,283 - +0.0
115,283 - -1.0
115,283 - -2.2
115,283 - +0.7
115,283 - -1.2
115,283 - -1.9
115,283 - -0.5
115,283 - -0.3
115,283 - -0.3
115,283 - -0.5
115,283 - +0.3
115,346 + +0.7
115,346 + -1.4
115,347 - -1.3
115,347 - -1.0
115,349 + +0.1
115,349 + -0.3
115,349 + -0.5
115,349 + -0.2
115,349 + -2.0
115,349 + -0.6
115,349 + -0.9
115,349 + -0.6
115,350 - -0.5
115,350 - +0.2
115,350 - -0.6
115,350 - +0.2
115,350 - -0.2
115,350 - -0.7
115,350 - -1.4
115,350 - +1.0
115,350 - -0.6
115,401 - +0.5
115,473 - -0.3
115,497 - -0.5
115,497 - +1.5
115,497 - -0.6
115,650 - MPMX19_06848 0.20 -1.4
115,707 - MPMX19_06848 0.24 -1.4
115,907 + MPMX19_06848 0.40 +0.1
115,907 + MPMX19_06848 0.40 -0.5
115,908 - MPMX19_06848 0.40 +1.3
115,908 - MPMX19_06848 0.40 +1.0
116,075 + MPMX19_06848 0.53 +0.5
116,075 + MPMX19_06848 0.53 +0.5
116,075 + MPMX19_06848 0.53 -0.8
116,075 + MPMX19_06848 0.53 -0.3
116,076 - MPMX19_06848 0.53 -0.9
116,076 - MPMX19_06848 0.53 -1.0
116,076 - MPMX19_06848 0.53 +0.1
116,145 + MPMX19_06848 0.58 +1.4
116,145 + MPMX19_06848 0.58 -1.2
116,146 - MPMX19_06848 0.58 -0.6
116,146 - MPMX19_06848 0.58 -1.3
116,146 - MPMX19_06848 0.58 -0.5
116,171 + MPMX19_06848 0.60 -0.4

Or see this region's nucleotide sequence