Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06724

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06723 and MPMX19_06724 are separated by 3 nucleotidesMPMX19_06724 and MPMX19_06725 are separated by 97 nucleotides MPMX19_06723: MPMX19_06723 - hypothetical protein, at 297,466 to 300,912 _06723 MPMX19_06724: MPMX19_06724 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 300,916 to 301,467 _06724 MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632 _06725 Position (kb) 300 301 302Strain fitness (log2 ratio) -1 0 1 2at 300.157 kb on + strand, within MPMX19_06723at 300.202 kb on + strand, within MPMX19_06723at 300.202 kb on + strand, within MPMX19_06723at 300.220 kb on + strand, within MPMX19_06723at 300.373 kb on + strand, within MPMX19_06723at 300.667 kb on + strandat 300.667 kb on + strandat 300.787 kb on + strandat 300.787 kb on + strandat 300.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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300,157 + MPMX19_06723 0.78 -0.1
300,202 + MPMX19_06723 0.79 -1.2
300,202 + MPMX19_06723 0.79 +1.7
300,220 + MPMX19_06723 0.80 +0.7
300,373 + MPMX19_06723 0.84 -0.1
300,667 + +0.1
300,667 + +2.7
300,787 + +0.1
300,787 + +1.1
300,787 + -0.3

Or see this region's nucleotide sequence