Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06485

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06484 and MPMX19_06485 are separated by 49 nucleotidesMPMX19_06485 and MPMX19_06486 are separated by 27 nucleotides MPMX19_06484: MPMX19_06484 - hypothetical protein, at 267,665 to 268,717 _06484 MPMX19_06485: MPMX19_06485 - putative malonic semialdehyde reductase RutE, at 268,767 to 269,402 _06485 MPMX19_06486: MPMX19_06486 - Phenylacetate-coenzyme A ligase, at 269,430 to 270,764 _06486 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1at 267.814 kb on - strand, within MPMX19_06484at 268.142 kb on + strand, within MPMX19_06484at 268.142 kb on + strand, within MPMX19_06484at 268.143 kb on - strand, within MPMX19_06484at 268.143 kb on - strand, within MPMX19_06484at 268.212 kb on - strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.608 kb on - strand, within MPMX19_06484at 268.608 kb on - strand, within MPMX19_06484at 268.967 kb on - strand, within MPMX19_06485at 268.967 kb on - strand, within MPMX19_06485at 268.967 kb on - strand, within MPMX19_06485at 269.048 kb on - strand, within MPMX19_06485at 269.048 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.245 kb on + strand, within MPMX19_06485at 269.245 kb on + strand, within MPMX19_06485at 269.246 kb on - strand, within MPMX19_06485at 269.431 kb on + strandat 269.432 kb on - strandat 269.614 kb on - strand, within MPMX19_06486at 269.946 kb on - strand, within MPMX19_06486at 270.022 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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267,814 - MPMX19_06484 0.14 +0.6
268,142 + MPMX19_06484 0.45 -1.9
268,142 + MPMX19_06484 0.45 +0.0
268,143 - MPMX19_06484 0.45 +0.2
268,143 - MPMX19_06484 0.45 -0.5
268,212 - MPMX19_06484 0.52 +0.9
268,604 + MPMX19_06484 0.89 -1.5
268,604 + MPMX19_06484 0.89 +0.9
268,604 + MPMX19_06484 0.89 -2.2
268,604 + MPMX19_06484 0.89 -0.7
268,604 + MPMX19_06484 0.89 -0.6
268,604 + MPMX19_06484 0.89 +0.8
268,605 - MPMX19_06484 0.89 -0.5
268,605 - MPMX19_06484 0.89 -0.3
268,605 - MPMX19_06484 0.89 -0.4
268,605 - MPMX19_06484 0.89 -0.5
268,605 - MPMX19_06484 0.89 -0.7
268,605 - MPMX19_06484 0.89 -1.1
268,605 - MPMX19_06484 0.89 +0.3
268,605 - MPMX19_06484 0.89 -1.1
268,605 - MPMX19_06484 0.89 -0.0
268,605 - MPMX19_06484 0.89 +0.6
268,605 - MPMX19_06484 0.89 -1.0
268,605 - MPMX19_06484 0.89 -0.3
268,605 - MPMX19_06484 0.89 +0.5
268,605 - MPMX19_06484 0.89 +0.1
268,607 + MPMX19_06484 0.89 -0.7
268,607 + MPMX19_06484 0.89 -1.0
268,607 + MPMX19_06484 0.89 -0.1
268,608 - MPMX19_06484 0.90 -0.9
268,608 - MPMX19_06484 0.90 +0.7
268,967 - MPMX19_06485 0.31 -0.3
268,967 - MPMX19_06485 0.31 -1.8
268,967 - MPMX19_06485 0.31 -1.0
269,048 - MPMX19_06485 0.44 +0.3
269,048 - MPMX19_06485 0.44 -0.8
269,059 - MPMX19_06485 0.46 -1.3
269,059 - MPMX19_06485 0.46 +0.2
269,059 - MPMX19_06485 0.46 -1.2
269,059 - MPMX19_06485 0.46 -0.2
269,059 - MPMX19_06485 0.46 -0.8
269,059 - MPMX19_06485 0.46 -1.9
269,092 + MPMX19_06485 0.51 -0.2
269,092 + MPMX19_06485 0.51 -1.7
269,092 + MPMX19_06485 0.51 -1.1
269,092 + MPMX19_06485 0.51 -0.7
269,245 + MPMX19_06485 0.75 -0.1
269,245 + MPMX19_06485 0.75 -2.4
269,246 - MPMX19_06485 0.75 +0.2
269,431 + -0.9
269,432 - -0.5
269,614 - MPMX19_06486 0.14 +0.1
269,946 - MPMX19_06486 0.39 -1.5
270,022 + MPMX19_06486 0.44 -0.1
270,025 + MPMX19_06486 0.45 -0.8
270,025 + MPMX19_06486 0.45 -0.0
270,025 + MPMX19_06486 0.45 -2.0
270,025 + MPMX19_06486 0.45 -1.1
270,025 + MPMX19_06486 0.45 -0.3
270,031 + MPMX19_06486 0.45 -1.3
270,031 + MPMX19_06486 0.45 -1.3
270,031 + MPMX19_06486 0.45 -0.3

Or see this region's nucleotide sequence