Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06258

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06256 and MPMX19_06257 overlap by 4 nucleotidesMPMX19_06257 and MPMX19_06258 are separated by 375 nucleotidesMPMX19_06258 and MPMX19_06259 are separated by 266 nucleotides MPMX19_06256: MPMX19_06256 - hypothetical protein, at 9,041 to 10,345 _06256 MPMX19_06257: MPMX19_06257 - hypothetical protein, at 10,342 to 10,629 _06257 MPMX19_06258: MPMX19_06258 - hypothetical protein, at 11,005 to 11,250 _06258 MPMX19_06259: MPMX19_06259 - hypothetical protein, at 11,517 to 11,873 _06259 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1at 10.064 kb on + strand, within MPMX19_06256at 10.064 kb on + strand, within MPMX19_06256at 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.222 kb on + strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.223 kb on - strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.224 kb on + strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.225 kb on - strandat 10.314 kb on + strandat 10.315 kb on - strandat 10.315 kb on - strandat 10.315 kb on - strandat 10.629 kb on + strandat 10.740 kb on - strandat 10.797 kb on - strandat 10.882 kb on + strandat 10.883 kb on - strandat 10.883 kb on - strandat 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.166 kb on + strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.167 kb on - strand, within MPMX19_06258at 11.385 kb on + strandat 11.385 kb on + strandat 11.385 kb on + strandat 11.385 kb on + strandat 11.386 kb on - strandat 11.386 kb on - strandat 11.386 kb on - strandat 11.490 kb on + strandat 11.490 kb on + strandat 11.518 kb on + strandat 11.518 kb on + strandat 11.519 kb on - strandat 11.519 kb on - strandat 11.519 kb on - strandat 11.519 kb on - strandat 11.763 kb on + strand, within MPMX19_06259at 11.764 kb on - strand, within MPMX19_06259at 11.905 kb on + strandat 11.905 kb on + strandat 11.905 kb on + strandat 11.906 kb on - strandat 11.906 kb on - strandat 11.906 kb on - strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.949 kb on + strandat 11.950 kb on - strandat 11.950 kb on - strandat 11.950 kb on - strandat 11.950 kb on - strandat 11.950 kb on - strandat 12.056 kb on + strandat 12.056 kb on + strandat 12.056 kb on + strandat 12.056 kb on + strandat 12.056 kb on + strandat 12.057 kb on - strandat 12.057 kb on - strandat 12.057 kb on - strandat 12.057 kb on - strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.199 kb on + strandat 12.200 kb on - strandat 12.200 kb on - strandat 12.200 kb on - strandat 12.200 kb on - strandat 12.200 kb on - strandat 12.200 kb on - strandat 12.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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10,064 + MPMX19_06256 0.78 -2.0
10,064 + MPMX19_06256 0.78 -0.1
10,222 + -0.3
10,222 + -0.3
10,222 + -0.9
10,222 + -1.0
10,222 + -0.7
10,222 + +0.2
10,222 + -0.7
10,222 + -0.8
10,222 + +0.9
10,222 + -0.2
10,222 + -1.4
10,222 + -2.1
10,223 - +0.9
10,223 - +1.5
10,223 - -0.7
10,223 - -0.5
10,223 - -2.5
10,223 - -0.3
10,223 - +0.7
10,223 - -1.0
10,223 - -2.0
10,223 - -0.7
10,224 + +1.3
10,224 + +1.1
10,224 + -0.1
10,224 + -1.4
10,224 + -2.2
10,224 + -2.1
10,224 + -0.6
10,224 + +0.6
10,224 + -0.2
10,224 + +0.6
10,224 + -0.4
10,224 + -0.5
10,224 + +0.2
10,224 + -1.0
10,224 + +0.2
10,224 + -0.7
10,224 + -0.5
10,225 - +0.3
10,225 - -0.3
10,225 - +1.3
10,225 - -2.5
10,225 - -0.3
10,225 - -0.2
10,225 - -0.5
10,225 - +0.7
10,225 - -1.1
10,225 - -0.8
10,314 + -0.5
10,315 - +0.3
10,315 - +0.6
10,315 - +0.2
10,629 + +0.5
10,740 - -1.1
10,797 - -0.2
10,882 + -1.5
10,883 - -1.3
10,883 - +0.2
11,166 + MPMX19_06258 0.65 -2.0
11,166 + MPMX19_06258 0.65 -1.8
11,166 + MPMX19_06258 0.65 -0.3
11,166 + MPMX19_06258 0.65 -2.0
11,166 + MPMX19_06258 0.65 -1.2
11,166 + MPMX19_06258 0.65 -1.6
11,166 + MPMX19_06258 0.65 -1.0
11,166 + MPMX19_06258 0.65 +0.9
11,167 - MPMX19_06258 0.66 +0.0
11,167 - MPMX19_06258 0.66 -2.6
11,167 - MPMX19_06258 0.66 -0.5
11,167 - MPMX19_06258 0.66 -2.4
11,167 - MPMX19_06258 0.66 -0.7
11,167 - MPMX19_06258 0.66 -0.7
11,167 - MPMX19_06258 0.66 +0.1
11,385 + +1.5
11,385 + +0.7
11,385 + -0.9
11,385 + +1.2
11,386 - -0.5
11,386 - -0.4
11,386 - -0.3
11,490 + -0.5
11,490 + -1.6
11,518 + -0.1
11,518 + -0.3
11,519 - -0.6
11,519 - -1.7
11,519 - -1.4
11,519 - -1.6
11,763 + MPMX19_06259 0.69 -1.2
11,764 - MPMX19_06259 0.69 -2.0
11,905 + +0.5
11,905 + -0.9
11,905 + -2.1
11,906 - -0.5
11,906 - -0.8
11,906 - -1.5
11,949 + -0.3
11,949 + +1.5
11,949 + -0.1
11,949 + -0.2
11,949 + -0.8
11,949 + +0.2
11,949 + -0.0
11,949 + -0.8
11,949 + -0.3
11,949 + -1.4
11,950 - +1.5
11,950 - -1.3
11,950 - +1.5
11,950 - -1.2
11,950 - +0.5
12,056 + -0.5
12,056 + +0.2
12,056 + -1.0
12,056 + -0.8
12,056 + +0.3
12,057 - +0.0
12,057 - +0.2
12,057 - -0.9
12,057 - -1.1
12,199 + -0.7
12,199 + -0.3
12,199 + -0.2
12,199 + -0.2
12,199 + -1.5
12,199 + -0.2
12,199 + -0.2
12,199 + -1.3
12,199 + -0.5
12,200 - +0.2
12,200 - -0.3
12,200 - +0.0
12,200 - -1.2
12,200 - -1.8
12,200 - -0.1
12,200 - -2.3

Or see this region's nucleotide sequence