Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06230

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06229 and MPMX19_06230 are separated by 374 nucleotidesMPMX19_06230 and MPMX19_06231 are separated by 611 nucleotides MPMX19_06229: MPMX19_06229 - L-arabonate dehydratase, at 415,789 to 417,627 _06229 MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658 _06230 MPMX19_06231: MPMX19_06231 - Ribonuclease J, at 419,270 to 420,790 _06231 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 417.055 kb on + strand, within MPMX19_06229at 417.055 kb on + strand, within MPMX19_06229at 417.055 kb on + strand, within MPMX19_06229at 417.055 kb on + strand, within MPMX19_06229at 417.055 kb on + strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.056 kb on - strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.124 kb on + strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.125 kb on - strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.166 kb on + strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.167 kb on - strand, within MPMX19_06229at 417.580 kb on + strandat 417.580 kb on + strandat 417.580 kb on + strandat 417.580 kb on + strandat 417.580 kb on + strandat 417.581 kb on - strandat 417.581 kb on - strandat 417.581 kb on - strandat 417.581 kb on - strandat 417.770 kb on - strandat 417.770 kb on - strandat 417.770 kb on - strandat 417.770 kb on - strandat 417.770 kb on - strandat 417.777 kb on + strandat 417.777 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.899 kb on + strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.900 kb on - strandat 417.906 kb on - strandat 417.912 kb on + strandat 417.943 kb on + strandat 417.944 kb on - strandat 418.281 kb on - strand, within MPMX19_06230at 418.281 kb on - strand, within MPMX19_06230at 418.281 kb on - strand, within MPMX19_06230at 418.513 kb on + strand, within MPMX19_06230at 418.522 kb on + strand, within MPMX19_06230at 418.613 kb on + strandat 418.614 kb on - strandat 418.662 kb on + strandat 418.662 kb on + strandat 418.679 kb on + strandat 418.680 kb on - strandat 418.680 kb on - strandat 418.680 kb on - strandat 418.680 kb on - strandat 418.680 kb on - strandat 418.725 kb on - strandat 418.735 kb on + strandat 418.736 kb on - strandat 418.736 kb on - strandat 418.736 kb on - strandat 418.736 kb on - strandat 418.809 kb on + strandat 418.809 kb on + strandat 418.809 kb on + strandat 418.809 kb on + strandat 418.810 kb on - strandat 418.810 kb on - strandat 418.810 kb on - strandat 418.811 kb on + strandat 418.811 kb on + strandat 418.812 kb on - strandat 418.812 kb on - strandat 418.823 kb on + strandat 418.823 kb on + strandat 418.830 kb on - strandat 418.968 kb on + strandat 418.968 kb on + strandat 418.968 kb on + strandat 418.969 kb on - strandat 418.969 kb on - strandat 418.969 kb on - strandat 418.969 kb on - strandat 418.969 kb on - strandat 418.969 kb on - strandat 418.986 kb on + strandat 418.986 kb on + strandat 418.986 kb on + strandat 418.986 kb on + strandat 418.987 kb on - strandat 418.987 kb on - strandat 419.080 kb on - strandat 419.116 kb on + strandat 419.116 kb on + strandat 419.116 kb on + strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.117 kb on - strandat 419.247 kb on + strandat 419.247 kb on + strandat 419.247 kb on + strandat 419.247 kb on + strandat 419.258 kb on + strandat 419.258 kb on + strandat 419.258 kb on + strandat 419.258 kb on + strandat 419.258 kb on + strandat 419.259 kb on - strandat 419.259 kb on - strandat 419.259 kb on - strandat 419.259 kb on - strandat 419.259 kb on - strandat 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.477 kb on + strand, within MPMX19_06231at 419.478 kb on - strand, within MPMX19_06231at 419.478 kb on - strand, within MPMX19_06231at 419.478 kb on - strand, within MPMX19_06231at 419.635 kb on + strand, within MPMX19_06231

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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417,055 + MPMX19_06229 0.69 -0.6
417,055 + MPMX19_06229 0.69 +0.6
417,055 + MPMX19_06229 0.69 +0.6
417,055 + MPMX19_06229 0.69 +0.3
417,055 + MPMX19_06229 0.69 +0.0
417,056 - MPMX19_06229 0.69 +1.0
417,056 - MPMX19_06229 0.69 +0.2
417,056 - MPMX19_06229 0.69 -0.4
417,056 - MPMX19_06229 0.69 -0.6
417,056 - MPMX19_06229 0.69 -0.2
417,056 - MPMX19_06229 0.69 -2.2
417,056 - MPMX19_06229 0.69 -0.8
417,124 + MPMX19_06229 0.73 -0.2
417,124 + MPMX19_06229 0.73 -1.0
417,124 + MPMX19_06229 0.73 -1.0
417,124 + MPMX19_06229 0.73 +0.8
417,124 + MPMX19_06229 0.73 +0.8
417,124 + MPMX19_06229 0.73 -0.5
417,124 + MPMX19_06229 0.73 -0.2
417,125 - MPMX19_06229 0.73 +1.8
417,125 - MPMX19_06229 0.73 -0.2
417,125 - MPMX19_06229 0.73 +0.3
417,125 - MPMX19_06229 0.73 -0.3
417,125 - MPMX19_06229 0.73 -0.2
417,125 - MPMX19_06229 0.73 +0.5
417,125 - MPMX19_06229 0.73 -0.6
417,125 - MPMX19_06229 0.73 -0.1
417,125 - MPMX19_06229 0.73 -0.2
417,125 - MPMX19_06229 0.73 -1.4
417,125 - MPMX19_06229 0.73 -0.6
417,166 + MPMX19_06229 0.75 -1.0
417,166 + MPMX19_06229 0.75 +2.1
417,166 + MPMX19_06229 0.75 -1.5
417,166 + MPMX19_06229 0.75 -1.3
417,166 + MPMX19_06229 0.75 +0.2
417,166 + MPMX19_06229 0.75 -0.9
417,166 + MPMX19_06229 0.75 -1.7
417,167 - MPMX19_06229 0.75 -1.0
417,167 - MPMX19_06229 0.75 -0.0
417,167 - MPMX19_06229 0.75 -0.4
417,167 - MPMX19_06229 0.75 -0.4
417,167 - MPMX19_06229 0.75 -1.1
417,167 - MPMX19_06229 0.75 -1.0
417,167 - MPMX19_06229 0.75 -0.1
417,167 - MPMX19_06229 0.75 +0.8
417,580 + -1.4
417,580 + -1.2
417,580 + -1.7
417,580 + -1.0
417,580 + -0.5
417,581 - -0.7
417,581 - +0.4
417,581 - -1.3
417,581 - -1.4
417,770 - -0.0
417,770 - +0.6
417,770 - -0.7
417,770 - +0.8
417,770 - +0.4
417,777 + -1.5
417,777 + +2.4
417,899 + -1.0
417,899 + -0.0
417,899 + +0.4
417,899 + +0.8
417,899 + -0.4
417,899 + -1.6
417,899 + +1.5
417,899 + -0.4
417,900 - -1.4
417,900 - -2.4
417,900 - -0.6
417,900 - -0.8
417,900 - +0.4
417,900 - -2.1
417,900 - -1.1
417,900 - -1.7
417,900 - -0.4
417,906 - -1.4
417,912 + -0.3
417,943 + +0.2
417,944 - -0.4
418,281 - MPMX19_06230 0.42 -2.1
418,281 - MPMX19_06230 0.42 -0.2
418,281 - MPMX19_06230 0.42 -0.2
418,513 + MPMX19_06230 0.78 -1.1
418,522 + MPMX19_06230 0.79 -0.4
418,613 + +1.8
418,614 - -0.4
418,662 + -1.7
418,662 + +0.7
418,679 + -0.9
418,680 - -2.0
418,680 - -0.6
418,680 - -1.5
418,680 - -0.3
418,680 - -0.2
418,725 - +0.3
418,735 + -1.8
418,736 - -1.3
418,736 - -1.5
418,736 - -0.3
418,736 - -0.1
418,809 + +1.4
418,809 + +0.2
418,809 + -0.2
418,809 + -1.1
418,810 - -0.2
418,810 - +0.0
418,810 - +0.0
418,811 + -0.6
418,811 + -0.6
418,812 - -2.3
418,812 - -0.3
418,823 + -1.4
418,823 + -1.0
418,830 - +0.8
418,968 + -1.4
418,968 + -0.2
418,968 + +0.6
418,969 - -0.3
418,969 - +0.0
418,969 - +0.0
418,969 - -0.0
418,969 - -0.9
418,969 - -0.9
418,986 + +0.1
418,986 + +0.4
418,986 + -2.0
418,986 + -0.4
418,987 - +0.6
418,987 - +0.0
419,080 - -0.8
419,116 + -0.2
419,116 + -1.1
419,116 + -0.1
419,117 - -0.8
419,117 - -1.7
419,117 - +0.2
419,117 - -0.3
419,117 - -0.4
419,117 - -0.4
419,117 - +0.8
419,117 - -1.2
419,247 + +0.4
419,247 + -1.5
419,247 + -0.6
419,247 + +2.4
419,258 + -1.0
419,258 + -1.2
419,258 + -1.4
419,258 + +0.4
419,258 + -0.0
419,259 - -1.0
419,259 - -1.1
419,259 - -1.9
419,259 - -0.4
419,259 - -1.2
419,477 + MPMX19_06231 0.14 +1.8
419,477 + MPMX19_06231 0.14 -1.4
419,477 + MPMX19_06231 0.14 -1.6
419,477 + MPMX19_06231 0.14 -1.4
419,477 + MPMX19_06231 0.14 -0.3
419,477 + MPMX19_06231 0.14 -1.0
419,477 + MPMX19_06231 0.14 +0.1
419,478 - MPMX19_06231 0.14 -1.0
419,478 - MPMX19_06231 0.14 -0.3
419,478 - MPMX19_06231 0.14 -1.4
419,635 + MPMX19_06231 0.24 -1.4

Or see this region's nucleotide sequence