Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06202

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06200 and MPMX19_06201 are separated by 39 nucleotidesMPMX19_06201 and MPMX19_06202 overlap by 4 nucleotidesMPMX19_06202 and MPMX19_06203 are separated by 4 nucleotidesMPMX19_06203 and MPMX19_06204 overlap by 11 nucleotides MPMX19_06200: MPMX19_06200 - hypothetical protein, at 387,763 to 388,926 _06200 MPMX19_06201: MPMX19_06201 - hypothetical protein, at 388,966 to 389,757 _06201 MPMX19_06202: MPMX19_06202 - hypothetical protein, at 389,754 to 390,149 _06202 MPMX19_06203: MPMX19_06203 - flagellum biosynthesis repressor protein FlbT, at 390,154 to 390,639 _06203 MPMX19_06204: MPMX19_06204 - hypothetical protein, at 390,629 to 391,033 _06204 Position (kb) 389 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 388.903 kb on + strandat 388.903 kb on + strandat 388.904 kb on - strandat 388.904 kb on - strandat 388.904 kb on - strandat 388.904 kb on - strandat 388.904 kb on - strandat 388.904 kb on - strandat 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.102 kb on + strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.103 kb on - strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.282 kb on + strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.318 kb on + strand, within MPMX19_06201at 389.318 kb on + strand, within MPMX19_06201at 389.319 kb on - strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.504 kb on + strand, within MPMX19_06201at 389.504 kb on + strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.708 kb on + strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.837 kb on - strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 390.217 kb on + strand, within MPMX19_06203at 390.217 kb on + strand, within MPMX19_06203at 390.218 kb on - strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.315 kb on - strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.560 kb on + strand, within MPMX19_06203at 390.561 kb on - strand, within MPMX19_06203at 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.639 kb on + strandat 390.639 kb on + strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 391.017 kb on + strandat 391.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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388,903 + -1.3
388,903 + +0.4
388,904 - -0.9
388,904 - -1.0
388,904 - +0.0
388,904 - +0.2
388,904 - +0.8
388,904 - -0.7
389,102 + MPMX19_06201 0.17 -1.7
389,102 + MPMX19_06201 0.17 +0.6
389,102 + MPMX19_06201 0.17 +0.4
389,102 + MPMX19_06201 0.17 -0.2
389,102 + MPMX19_06201 0.17 -2.6
389,102 + MPMX19_06201 0.17 -0.0
389,102 + MPMX19_06201 0.17 -0.1
389,102 + MPMX19_06201 0.17 -2.2
389,102 + MPMX19_06201 0.17 -0.3
389,102 + MPMX19_06201 0.17 -1.8
389,102 + MPMX19_06201 0.17 -0.9
389,103 - MPMX19_06201 0.17 -0.7
389,103 - MPMX19_06201 0.17 -0.2
389,103 - MPMX19_06201 0.17 -0.8
389,103 - MPMX19_06201 0.17 +0.5
389,103 - MPMX19_06201 0.17 -0.1
389,103 - MPMX19_06201 0.17 -1.1
389,103 - MPMX19_06201 0.17 +0.6
389,103 - MPMX19_06201 0.17 -0.7
389,103 - MPMX19_06201 0.17 -1.2
389,243 + MPMX19_06201 0.35 -0.2
389,243 + MPMX19_06201 0.35 -0.1
389,243 + MPMX19_06201 0.35 -0.2
389,243 + MPMX19_06201 0.35 -0.7
389,243 + MPMX19_06201 0.35 -0.8
389,243 + MPMX19_06201 0.35 -1.0
389,243 + MPMX19_06201 0.35 -1.3
389,243 + MPMX19_06201 0.35 +1.1
389,244 - MPMX19_06201 0.35 -0.6
389,244 - MPMX19_06201 0.35 +1.6
389,244 - MPMX19_06201 0.35 -1.5
389,244 - MPMX19_06201 0.35 -1.3
389,282 + MPMX19_06201 0.40 -1.4
389,283 - MPMX19_06201 0.40 -0.8
389,283 - MPMX19_06201 0.40 -1.4
389,283 - MPMX19_06201 0.40 -1.4
389,318 + MPMX19_06201 0.44 -0.8
389,318 + MPMX19_06201 0.44 -1.2
389,319 - MPMX19_06201 0.45 -1.1
389,381 + MPMX19_06201 0.52 -0.8
389,381 + MPMX19_06201 0.52 -0.4
389,381 + MPMX19_06201 0.52 -0.2
389,381 + MPMX19_06201 0.52 -0.4
389,381 + MPMX19_06201 0.52 -1.0
389,381 + MPMX19_06201 0.52 -1.0
389,382 - MPMX19_06201 0.53 -2.2
389,382 - MPMX19_06201 0.53 -2.3
389,382 - MPMX19_06201 0.53 -1.1
389,382 - MPMX19_06201 0.53 -1.0
389,382 - MPMX19_06201 0.53 -0.7
389,382 - MPMX19_06201 0.53 -0.5
389,382 - MPMX19_06201 0.53 -0.6
389,382 - MPMX19_06201 0.53 -1.4
389,382 - MPMX19_06201 0.53 +0.4
389,382 - MPMX19_06201 0.53 -2.0
389,382 - MPMX19_06201 0.53 -0.3
389,504 + MPMX19_06201 0.68 -1.3
389,504 + MPMX19_06201 0.68 +0.2
389,505 - MPMX19_06201 0.68 -0.8
389,505 - MPMX19_06201 0.68 +0.2
389,505 - MPMX19_06201 0.68 +0.4
389,660 + MPMX19_06201 0.88 -0.8
389,660 + MPMX19_06201 0.88 +0.6
389,660 + MPMX19_06201 0.88 -0.6
389,660 + MPMX19_06201 0.88 -2.9
389,660 + MPMX19_06201 0.88 -0.6
389,661 - MPMX19_06201 0.88 +0.4
389,661 - MPMX19_06201 0.88 -0.4
389,661 - MPMX19_06201 0.88 -1.0
389,661 - MPMX19_06201 0.88 -0.8
389,708 + -2.3
389,709 - -1.7
389,709 - -1.0
389,709 - -1.5
389,709 - -0.4
389,837 - MPMX19_06202 0.21 +0.6
389,893 + MPMX19_06202 0.35 +0.4
389,893 + MPMX19_06202 0.35 -1.3
389,894 - MPMX19_06202 0.35 -3.1
389,894 - MPMX19_06202 0.35 -0.4
390,217 + MPMX19_06203 0.13 -1.1
390,217 + MPMX19_06203 0.13 +0.1
390,218 - MPMX19_06203 0.13 -0.8
390,275 + MPMX19_06203 0.25 -1.4
390,275 + MPMX19_06203 0.25 +0.4
390,275 + MPMX19_06203 0.25 -1.1
390,275 + MPMX19_06203 0.25 -1.6
390,275 + MPMX19_06203 0.25 -0.4
390,275 + MPMX19_06203 0.25 -0.5
390,275 + MPMX19_06203 0.25 -1.0
390,275 + MPMX19_06203 0.25 -0.7
390,275 + MPMX19_06203 0.25 -2.5
390,275 + MPMX19_06203 0.25 -1.7
390,275 + MPMX19_06203 0.25 -0.2
390,275 + MPMX19_06203 0.25 -0.6
390,275 + MPMX19_06203 0.25 -0.4
390,275 + MPMX19_06203 0.25 -1.1
390,275 + MPMX19_06203 0.25 -1.1
390,276 - MPMX19_06203 0.25 +0.7
390,276 - MPMX19_06203 0.25 -0.8
390,276 - MPMX19_06203 0.25 -1.7
390,276 - MPMX19_06203 0.25 -1.0
390,276 - MPMX19_06203 0.25 +1.0
390,276 - MPMX19_06203 0.25 -1.8
390,276 - MPMX19_06203 0.25 +0.0
390,276 - MPMX19_06203 0.25 +0.2
390,276 - MPMX19_06203 0.25 -0.2
390,276 - MPMX19_06203 0.25 -1.3
390,311 + MPMX19_06203 0.32 -0.4
390,311 + MPMX19_06203 0.32 -1.2
390,311 + MPMX19_06203 0.32 +0.8
390,311 + MPMX19_06203 0.32 -0.8
390,311 + MPMX19_06203 0.32 -0.4
390,311 + MPMX19_06203 0.32 -1.0
390,311 + MPMX19_06203 0.32 -1.6
390,311 + MPMX19_06203 0.32 +0.2
390,312 - MPMX19_06203 0.33 -2.8
390,312 - MPMX19_06203 0.33 -2.1
390,312 - MPMX19_06203 0.33 +0.7
390,312 - MPMX19_06203 0.33 -1.8
390,312 - MPMX19_06203 0.33 -1.1
390,312 - MPMX19_06203 0.33 -0.5
390,312 - MPMX19_06203 0.33 -1.6
390,314 + MPMX19_06203 0.33 -1.3
390,314 + MPMX19_06203 0.33 +0.4
390,314 + MPMX19_06203 0.33 -1.0
390,315 - MPMX19_06203 0.33 -0.6
390,386 + MPMX19_06203 0.48 +0.4
390,386 + MPMX19_06203 0.48 -0.1
390,386 + MPMX19_06203 0.48 -1.8
390,386 + MPMX19_06203 0.48 -1.0
390,386 + MPMX19_06203 0.48 -0.2
390,386 + MPMX19_06203 0.48 -1.3
390,386 + MPMX19_06203 0.48 -1.4
390,386 + MPMX19_06203 0.48 -1.6
390,386 + MPMX19_06203 0.48 -2.3
390,387 - MPMX19_06203 0.48 +0.5
390,387 - MPMX19_06203 0.48 -0.1
390,387 - MPMX19_06203 0.48 -0.8
390,387 - MPMX19_06203 0.48 -0.6
390,387 - MPMX19_06203 0.48 -0.9
390,387 - MPMX19_06203 0.48 +0.4
390,470 + MPMX19_06203 0.65 -1.6
390,470 + MPMX19_06203 0.65 +0.0
390,470 + MPMX19_06203 0.65 -1.1
390,470 + MPMX19_06203 0.65 +0.0
390,470 + MPMX19_06203 0.65 +0.4
390,471 - MPMX19_06203 0.65 -1.4
390,471 - MPMX19_06203 0.65 +0.6
390,471 - MPMX19_06203 0.65 +0.1
390,471 - MPMX19_06203 0.65 -0.7
390,560 + MPMX19_06203 0.84 -1.7
390,561 - MPMX19_06203 0.84 +0.3
390,630 + -0.2
390,630 + +0.5
390,630 + +0.8
390,630 + -1.5
390,630 + -0.2
390,630 + -1.2
390,630 + +0.0
390,630 + -0.2
390,630 + -0.0
390,630 + -1.1
390,630 + -1.2
390,630 + +0.1
390,630 + +0.0
390,630 + -0.2
390,630 + -0.8
390,630 + -1.5
390,630 + -0.8
390,630 + +0.3
390,630 + -0.8
390,630 + +0.0
390,630 + -0.9
390,630 + -1.0
390,630 + -0.2
390,630 + -1.7
390,630 + -0.6
390,631 - -0.6
390,631 - -0.4
390,631 - +0.0
390,631 - +1.0
390,631 - +0.5
390,631 - +1.8
390,631 - -1.8
390,631 - -1.3
390,631 - -0.1
390,631 - -2.0
390,631 - +0.0
390,631 - +0.0
390,631 - -0.4
390,631 - +1.0
390,631 - +0.0
390,631 - +0.1
390,631 - -1.0
390,631 - -1.6
390,631 - -1.4
390,631 - +0.4
390,631 - -1.0
390,639 + -0.6
390,639 + -1.6
390,640 - +0.0
390,640 - -0.6
390,640 - -0.1
390,640 - +0.0
390,640 - +0.8
391,017 + -0.3
391,018 - +0.6

Or see this region's nucleotide sequence