Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05607 and MPMX19_05608 overlap by 4 nucleotides MPMX19_05608 and MPMX19_05609 are separated by 372 nucleotides MPMX19_05609 and MPMX19_05610 are separated by 85 nucleotides
MPMX19_05607: MPMX19_05607 - Sensor histidine kinase RcsC, at 317,570 to 320,332
_05607
MPMX19_05608: MPMX19_05608 - hypothetical protein, at 320,329 to 321,180
_05608
MPMX19_05609: MPMX19_05609 - hypothetical protein, at 321,553 to 321,741
_05609
MPMX19_05610: MPMX19_05610 - Efflux pump membrane transporter BepE, at 321,827 to 324,901
_05610
Position (kb) 320
321
322 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 319.488 kb on + strand, within MPMX19_05607 at 319.489 kb on - strand, within MPMX19_05607 at 319.716 kb on + strand, within MPMX19_05607 at 319.716 kb on + strand, within MPMX19_05607 at 319.716 kb on + strand, within MPMX19_05607 at 319.716 kb on + strand, within MPMX19_05607 at 319.716 kb on + strand, within MPMX19_05607 at 319.717 kb on - strand, within MPMX19_05607 at 319.717 kb on - strand, within MPMX19_05607 at 319.717 kb on - strand, within MPMX19_05607 at 319.717 kb on - strand, within MPMX19_05607 at 319.947 kb on + strand, within MPMX19_05607 at 319.947 kb on + strand, within MPMX19_05607 at 319.947 kb on + strand, within MPMX19_05607 at 319.947 kb on + strand, within MPMX19_05607 at 319.948 kb on - strand, within MPMX19_05607 at 319.948 kb on - strand, within MPMX19_05607 at 319.948 kb on - strand, within MPMX19_05607 at 320.067 kb on + strand at 320.067 kb on + strand at 320.067 kb on + strand at 320.067 kb on + strand at 320.067 kb on + strand at 320.067 kb on + strand at 320.068 kb on - strand at 320.068 kb on - strand at 320.068 kb on - strand at 320.068 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.122 kb on - strand at 320.214 kb on + strand at 320.215 kb on - strand at 320.438 kb on + strand, within MPMX19_05608 at 320.438 kb on + strand, within MPMX19_05608 at 320.438 kb on + strand, within MPMX19_05608 at 320.438 kb on + strand, within MPMX19_05608 at 320.439 kb on - strand, within MPMX19_05608 at 320.439 kb on - strand, within MPMX19_05608 at 320.439 kb on - strand, within MPMX19_05608 at 320.439 kb on - strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.525 kb on + strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.526 kb on - strand, within MPMX19_05608 at 320.678 kb on + strand, within MPMX19_05608 at 320.678 kb on + strand, within MPMX19_05608 at 320.678 kb on + strand, within MPMX19_05608 at 320.678 kb on + strand, within MPMX19_05608 at 320.678 kb on + strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.679 kb on - strand, within MPMX19_05608 at 320.798 kb on + strand, within MPMX19_05608 at 320.798 kb on + strand, within MPMX19_05608 at 320.798 kb on + strand, within MPMX19_05608 at 320.799 kb on - strand, within MPMX19_05608 at 320.799 kb on - strand, within MPMX19_05608 at 320.846 kb on + strand, within MPMX19_05608 at 320.846 kb on + strand, within MPMX19_05608 at 320.846 kb on + strand, within MPMX19_05608 at 320.846 kb on + strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.847 kb on - strand, within MPMX19_05608 at 320.864 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.921 kb on + strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 320.922 kb on - strand, within MPMX19_05608 at 321.026 kb on + strand, within MPMX19_05608 at 321.026 kb on + strand, within MPMX19_05608 at 321.026 kb on + strand, within MPMX19_05608 at 321.027 kb on - strand, within MPMX19_05608 at 321.027 kb on - strand, within MPMX19_05608 at 321.268 kb on + strand at 321.268 kb on + strand at 321.282 kb on + strand at 321.282 kb on + strand at 321.282 kb on + strand at 321.283 kb on - strand at 321.283 kb on - strand at 321.306 kb on - strand at 321.306 kb on - strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.499 kb on + strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.500 kb on - strand at 321.520 kb on + strand at 321.520 kb on + strand at 321.520 kb on + strand at 321.532 kb on - strand at 321.532 kb on - strand at 321.876 kb on + strand at 321.876 kb on + strand at 321.876 kb on + strand at 321.876 kb on + strand at 321.877 kb on - strand at 321.877 kb on - strand at 321.900 kb on + strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 319,488 + MPMX19_05607 0.69 -0.0 319,489 - MPMX19_05607 0.69 +0.1 319,716 + MPMX19_05607 0.78 -0.2 319,716 + MPMX19_05607 0.78 +0.6 319,716 + MPMX19_05607 0.78 -1.2 319,716 + MPMX19_05607 0.78 -0.4 319,716 + MPMX19_05607 0.78 -0.4 319,717 - MPMX19_05607 0.78 +1.2 319,717 - MPMX19_05607 0.78 +0.2 319,717 - MPMX19_05607 0.78 -1.1 319,717 - MPMX19_05607 0.78 -0.2 319,947 + MPMX19_05607 0.86 -2.4 319,947 + MPMX19_05607 0.86 -1.4 319,947 + MPMX19_05607 0.86 -2.8 319,947 + MPMX19_05607 0.86 -0.6 319,948 - MPMX19_05607 0.86 +0.6 319,948 - MPMX19_05607 0.86 -0.8 319,948 - MPMX19_05607 0.86 -1.2 320,067 + -0.9 320,067 + -0.8 320,067 + -0.9 320,067 + -0.6 320,067 + +0.5 320,067 + -0.8 320,068 - -1.2 320,068 - -1.7 320,068 - -0.4 320,068 - +0.1 320,122 - -1.3 320,122 - -2.5 320,122 - -0.4 320,122 - -0.4 320,122 - +1.0 320,122 - +0.1 320,122 - -1.2 320,122 - -1.7 320,214 + -0.3 320,215 - -0.6 320,438 + MPMX19_05608 0.13 -0.9 320,438 + MPMX19_05608 0.13 -0.6 320,438 + MPMX19_05608 0.13 +0.6 320,438 + MPMX19_05608 0.13 -1.9 320,439 - MPMX19_05608 0.13 -2.0 320,439 - MPMX19_05608 0.13 +0.1 320,439 - MPMX19_05608 0.13 -0.1 320,439 - MPMX19_05608 0.13 -0.9 320,525 + MPMX19_05608 0.23 -0.4 320,525 + MPMX19_05608 0.23 -1.4 320,525 + MPMX19_05608 0.23 -0.2 320,525 + MPMX19_05608 0.23 -0.1 320,525 + MPMX19_05608 0.23 +0.1 320,525 + MPMX19_05608 0.23 -0.6 320,525 + MPMX19_05608 0.23 -0.1 320,525 + MPMX19_05608 0.23 +0.4 320,525 + MPMX19_05608 0.23 -1.5 320,525 + MPMX19_05608 0.23 -0.1 320,525 + MPMX19_05608 0.23 -0.8 320,525 + MPMX19_05608 0.23 -0.6 320,525 + MPMX19_05608 0.23 -0.5 320,525 + MPMX19_05608 0.23 -2.1 320,525 + MPMX19_05608 0.23 +0.6 320,526 - MPMX19_05608 0.23 -0.8 320,526 - MPMX19_05608 0.23 +0.6 320,526 - MPMX19_05608 0.23 -2.1 320,526 - MPMX19_05608 0.23 +0.8 320,526 - MPMX19_05608 0.23 -0.4 320,526 - MPMX19_05608 0.23 -0.7 320,526 - MPMX19_05608 0.23 -0.1 320,526 - MPMX19_05608 0.23 -1.5 320,678 + MPMX19_05608 0.41 -0.3 320,678 + MPMX19_05608 0.41 +1.5 320,678 + MPMX19_05608 0.41 +0.3 320,678 + MPMX19_05608 0.41 +0.8 320,678 + MPMX19_05608 0.41 +1.4 320,679 - MPMX19_05608 0.41 -3.9 320,679 - MPMX19_05608 0.41 -2.4 320,679 - MPMX19_05608 0.41 -0.6 320,679 - MPMX19_05608 0.41 -0.9 320,679 - MPMX19_05608 0.41 +0.8 320,679 - MPMX19_05608 0.41 +1.2 320,679 - MPMX19_05608 0.41 +0.5 320,679 - MPMX19_05608 0.41 -0.4 320,798 + MPMX19_05608 0.55 +0.2 320,798 + MPMX19_05608 0.55 -0.3 320,798 + MPMX19_05608 0.55 -0.7 320,799 - MPMX19_05608 0.55 -0.2 320,799 - MPMX19_05608 0.55 -2.3 320,846 + MPMX19_05608 0.61 -0.2 320,846 + MPMX19_05608 0.61 -0.4 320,846 + MPMX19_05608 0.61 -0.6 320,846 + MPMX19_05608 0.61 -1.2 320,847 - MPMX19_05608 0.61 -0.4 320,847 - MPMX19_05608 0.61 +0.6 320,847 - MPMX19_05608 0.61 +0.4 320,847 - MPMX19_05608 0.61 -1.6 320,847 - MPMX19_05608 0.61 -0.9 320,847 - MPMX19_05608 0.61 -1.5 320,864 + MPMX19_05608 0.63 -2.4 320,921 + MPMX19_05608 0.69 -0.5 320,921 + MPMX19_05608 0.69 -2.5 320,921 + MPMX19_05608 0.69 +0.6 320,921 + MPMX19_05608 0.69 -1.3 320,921 + MPMX19_05608 0.69 -0.7 320,921 + MPMX19_05608 0.69 +0.1 320,921 + MPMX19_05608 0.69 -1.3 320,921 + MPMX19_05608 0.69 -0.9 320,921 + MPMX19_05608 0.69 -1.0 320,921 + MPMX19_05608 0.69 +0.4 320,921 + MPMX19_05608 0.69 -1.9 320,922 - MPMX19_05608 0.70 -0.9 320,922 - MPMX19_05608 0.70 -0.2 320,922 - MPMX19_05608 0.70 +0.6 320,922 - MPMX19_05608 0.70 -0.0 320,922 - MPMX19_05608 0.70 +0.1 320,922 - MPMX19_05608 0.70 -1.3 320,922 - MPMX19_05608 0.70 +0.3 320,922 - MPMX19_05608 0.70 -1.7 320,922 - MPMX19_05608 0.70 -1.1 320,922 - MPMX19_05608 0.70 +0.5 320,922 - MPMX19_05608 0.70 -0.4 320,922 - MPMX19_05608 0.70 +0.4 321,026 + MPMX19_05608 0.82 -2.1 321,026 + MPMX19_05608 0.82 +0.3 321,026 + MPMX19_05608 0.82 -0.9 321,027 - MPMX19_05608 0.82 -1.1 321,027 - MPMX19_05608 0.82 -1.2 321,268 + -0.6 321,268 + -1.7 321,282 + +0.5 321,282 + -0.2 321,282 + +0.5 321,283 - -0.4 321,283 - -1.1 321,306 - -0.9 321,306 - -1.1 321,499 + -0.2 321,499 + -0.4 321,499 + -1.9 321,499 + -1.9 321,499 + -0.3 321,499 + +0.4 321,499 + -1.4 321,499 + +0.8 321,499 + -0.2 321,499 + -0.8 321,499 + -1.9 321,499 + -0.1 321,499 + -0.6 321,500 - +1.1 321,500 - +0.1 321,500 - -0.2 321,500 - -1.2 321,500 - -1.7 321,500 - -1.1 321,500 - -2.3 321,500 - +0.6 321,520 + -1.5 321,520 + +0.5 321,520 + -0.8 321,532 - +0.6 321,532 - -0.3 321,876 + -1.1 321,876 + -1.9 321,876 + -1.5 321,876 + -2.1 321,877 - -0.6 321,877 - -0.9 321,900 + -2.3 321,901 - -0.3 321,901 - +0.8 321,901 - -0.2 321,901 - -2.0 321,901 - -0.0 321,901 - -1.8 321,901 - -0.6 321,901 - -1.5 321,901 - -0.6
Or see this region's nucleotide sequence