Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05103

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05102 and MPMX19_05103 are separated by 20 nucleotidesMPMX19_05103 and MPMX19_05104 are separated by 19 nucleotidesMPMX19_05104 and MPMX19_05105 are separated by 93 nucleotides MPMX19_05102: MPMX19_05102 - Intermembrane transport protein PqiB, at 589,251 to 590,954 _05102 MPMX19_05103: MPMX19_05103 - Intermembrane transport lipoprotein PqiC, at 590,975 to 591,574 _05103 MPMX19_05104: MPMX19_05104 - hypothetical protein, at 591,594 to 592,145 _05104 MPMX19_05105: MPMX19_05105 - Glycine betaine uptake system permease protein YehW, at 592,239 to 592,997 _05105 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1 2at 590.118 kb on + strand, within MPMX19_05102at 590.118 kb on + strand, within MPMX19_05102at 590.169 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.271 kb on + strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.272 kb on - strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.343 kb on + strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.344 kb on - strand, within MPMX19_05102at 590.479 kb on - strand, within MPMX19_05102at 590.479 kb on - strand, within MPMX19_05102at 590.479 kb on - strand, within MPMX19_05102at 590.910 kb on + strandat 590.910 kb on + strandat 590.911 kb on - strandat 590.911 kb on - strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.953 kb on - strandat 590.953 kb on - strandat 591.065 kb on + strand, within MPMX19_05103at 591.065 kb on + strand, within MPMX19_05103at 591.065 kb on + strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.572 kb on + strandat 591.572 kb on + strandat 591.573 kb on - strandat 591.584 kb on + strandat 591.584 kb on + strandat 591.585 kb on - strandat 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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590,118 + MPMX19_05102 0.51 +0.6
590,118 + MPMX19_05102 0.51 +0.2
590,169 + MPMX19_05102 0.54 -0.1
590,271 + MPMX19_05102 0.60 -0.1
590,271 + MPMX19_05102 0.60 -0.5
590,271 + MPMX19_05102 0.60 +0.2
590,271 + MPMX19_05102 0.60 +0.2
590,271 + MPMX19_05102 0.60 -0.1
590,271 + MPMX19_05102 0.60 -1.6
590,271 + MPMX19_05102 0.60 -0.3
590,271 + MPMX19_05102 0.60 +0.1
590,271 + MPMX19_05102 0.60 -1.4
590,271 + MPMX19_05102 0.60 -0.6
590,271 + MPMX19_05102 0.60 -0.1
590,271 + MPMX19_05102 0.60 +0.2
590,271 + MPMX19_05102 0.60 +1.5
590,271 + MPMX19_05102 0.60 -0.2
590,271 + MPMX19_05102 0.60 -1.3
590,271 + MPMX19_05102 0.60 -0.3
590,272 - MPMX19_05102 0.60 -0.3
590,272 - MPMX19_05102 0.60 -1.1
590,272 - MPMX19_05102 0.60 -1.8
590,272 - MPMX19_05102 0.60 -1.3
590,272 - MPMX19_05102 0.60 -0.4
590,272 - MPMX19_05102 0.60 -1.2
590,272 - MPMX19_05102 0.60 +0.4
590,272 - MPMX19_05102 0.60 +0.5
590,272 - MPMX19_05102 0.60 -1.6
590,272 - MPMX19_05102 0.60 -0.7
590,272 - MPMX19_05102 0.60 +0.1
590,272 - MPMX19_05102 0.60 +0.9
590,272 - MPMX19_05102 0.60 -1.6
590,272 - MPMX19_05102 0.60 -0.1
590,272 - MPMX19_05102 0.60 +0.1
590,343 + MPMX19_05102 0.64 -1.3
590,343 + MPMX19_05102 0.64 -0.3
590,343 + MPMX19_05102 0.64 -1.1
590,343 + MPMX19_05102 0.64 -0.5
590,343 + MPMX19_05102 0.64 -0.5
590,343 + MPMX19_05102 0.64 -0.8
590,344 - MPMX19_05102 0.64 -1.0
590,344 - MPMX19_05102 0.64 -0.9
590,344 - MPMX19_05102 0.64 -0.7
590,344 - MPMX19_05102 0.64 -0.1
590,344 - MPMX19_05102 0.64 -0.3
590,344 - MPMX19_05102 0.64 -0.9
590,344 - MPMX19_05102 0.64 -0.9
590,344 - MPMX19_05102 0.64 -0.5
590,344 - MPMX19_05102 0.64 -1.2
590,344 - MPMX19_05102 0.64 -1.4
590,344 - MPMX19_05102 0.64 -1.3
590,479 - MPMX19_05102 0.72 -1.5
590,479 - MPMX19_05102 0.72 +1.1
590,479 - MPMX19_05102 0.72 -0.2
590,910 + +0.4
590,910 + +0.2
590,911 - -0.8
590,911 - -0.9
590,952 + -0.0
590,952 + +0.8
590,952 + -2.6
590,952 + -0.6
590,952 + -1.8
590,952 + -0.3
590,953 - -0.1
590,953 - -2.7
591,065 + MPMX19_05103 0.15 -0.8
591,065 + MPMX19_05103 0.15 -0.3
591,065 + MPMX19_05103 0.15 -1.5
591,066 - MPMX19_05103 0.15 +1.7
591,066 - MPMX19_05103 0.15 -0.3
591,066 - MPMX19_05103 0.15 +1.4
591,066 - MPMX19_05103 0.15 -1.4
591,218 + MPMX19_05103 0.41 -1.3
591,218 + MPMX19_05103 0.41 -2.2
591,218 + MPMX19_05103 0.41 +0.6
591,218 + MPMX19_05103 0.41 -0.2
591,218 + MPMX19_05103 0.41 +0.2
591,218 + MPMX19_05103 0.41 -0.2
591,218 + MPMX19_05103 0.41 -1.3
591,219 - MPMX19_05103 0.41 +0.2
591,219 - MPMX19_05103 0.41 -0.4
591,219 - MPMX19_05103 0.41 -1.0
591,219 - MPMX19_05103 0.41 -0.4
591,219 - MPMX19_05103 0.41 +0.0
591,572 + +0.1
591,572 + -1.3
591,573 - +1.8
591,584 + -1.9
591,584 + -1.2
591,585 - +1.3
591,683 + MPMX19_05104 0.16 -0.6
591,683 + MPMX19_05104 0.16 +0.5
591,683 + MPMX19_05104 0.16 +0.2
591,683 + MPMX19_05104 0.16 -1.9
591,683 + MPMX19_05104 0.16 +1.1
591,684 - MPMX19_05104 0.16 +0.4
591,684 - MPMX19_05104 0.16 -0.6
591,684 - MPMX19_05104 0.16 +0.5
592,179 + -0.7
592,179 + -1.8
592,179 + +0.1
592,179 + -0.6
592,179 + +1.5
592,179 + -1.1
592,180 - +0.5
592,180 - -0.1
592,180 - -0.5
592,180 - -0.6
592,180 - -0.6
592,180 - -0.9
592,339 + MPMX19_05105 0.13 -0.7
592,339 + MPMX19_05105 0.13 -2.6
592,339 + MPMX19_05105 0.13 +0.9
592,339 + MPMX19_05105 0.13 +0.1
592,339 + MPMX19_05105 0.13 +0.2
592,339 + MPMX19_05105 0.13 -0.1
592,339 + MPMX19_05105 0.13 -0.3
592,339 + MPMX19_05105 0.13 +0.9
592,339 + MPMX19_05105 0.13 -0.4
592,339 + MPMX19_05105 0.13 -0.1
592,339 + MPMX19_05105 0.13 -1.1
592,339 + MPMX19_05105 0.13 +0.2
592,339 + MPMX19_05105 0.13 -0.7
592,339 + MPMX19_05105 0.13 +0.2
592,339 + MPMX19_05105 0.13 -1.2
592,339 + MPMX19_05105 0.13 -0.8
592,340 - MPMX19_05105 0.13 -0.9
592,340 - MPMX19_05105 0.13 +0.3
592,340 - MPMX19_05105 0.13 -0.6
592,340 - MPMX19_05105 0.13 -1.7
592,340 - MPMX19_05105 0.13 -1.6
592,340 - MPMX19_05105 0.13 -0.7
592,340 - MPMX19_05105 0.13 -0.5
592,340 - MPMX19_05105 0.13 -0.9
592,340 - MPMX19_05105 0.13 -0.1
592,340 - MPMX19_05105 0.13 -0.5
592,340 - MPMX19_05105 0.13 -0.8
592,340 - MPMX19_05105 0.13 -0.8
592,340 - MPMX19_05105 0.13 +1.5
592,340 - MPMX19_05105 0.13 -1.9
592,340 - MPMX19_05105 0.13 -0.8
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 +1.2
592,340 - MPMX19_05105 0.13 -0.7
592,340 - MPMX19_05105 0.13 -1.8
592,340 - MPMX19_05105 0.13 -1.5
592,340 - MPMX19_05105 0.13 +0.9
592,340 - MPMX19_05105 0.13 -1.2
592,340 - MPMX19_05105 0.13 +0.5
592,340 - MPMX19_05105 0.13 -0.5
592,340 - MPMX19_05105 0.13 -1.2
592,340 - MPMX19_05105 0.13 +1.2
592,340 - MPMX19_05105 0.13 -2.6
592,340 - MPMX19_05105 0.13 -1.1
592,340 - MPMX19_05105 0.13 -0.5
592,340 - MPMX19_05105 0.13 +0.3

Or see this region's nucleotide sequence