Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04781

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04780 and MPMX19_04781 are separated by 125 nucleotidesMPMX19_04781 and MPMX19_04782 are separated by 224 nucleotides MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574 _04780 MPMX19_04781: MPMX19_04781 - hypothetical protein, at 176,700 to 177,782 _04781 MPMX19_04782: MPMX19_04782 - hypothetical protein, at 178,007 to 179,419 _04782 Position (kb) 176 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.943 kb on + strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.997 kb on + strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.267 kb on + strand, within MPMX19_04780at 176.427 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.478 kb on + strand, within MPMX19_04780at 176.478 kb on + strand, within MPMX19_04780at 176.479 kb on - strand, within MPMX19_04780at 176.479 kb on - strand, within MPMX19_04780at 176.567 kb on + strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.968 kb on + strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.519 kb on + strand, within MPMX19_04781at 177.572 kb on + strand, within MPMX19_04781at 177.740 kb on + strandat 177.740 kb on + strandat 177.849 kb on + strandat 177.850 kb on - strandat 177.857 kb on + strandat 177.901 kb on - strandat 177.941 kb on + strandat 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.226 kb on + strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.227 kb on - strand, within MPMX19_04782at 178.347 kb on + strand, within MPMX19_04782at 178.347 kb on + strand, within MPMX19_04782at 178.348 kb on - strand, within MPMX19_04782at 178.348 kb on - strand, within MPMX19_04782at 178.348 kb on - strand, within MPMX19_04782at 178.348 kb on - strand, within MPMX19_04782at 178.431 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.476 kb on + strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.477 kb on - strand, within MPMX19_04782at 178.624 kb on - strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.719 kb on + strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782at 178.720 kb on - strand, within MPMX19_04782

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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175,918 + MPMX19_04780 0.12 +0.3
175,918 + MPMX19_04780 0.12 -1.8
175,918 + MPMX19_04780 0.12 -0.4
175,919 - MPMX19_04780 0.12 -1.1
175,919 - MPMX19_04780 0.12 -0.1
175,919 - MPMX19_04780 0.12 -0.6
175,919 - MPMX19_04780 0.12 -3.0
175,919 - MPMX19_04780 0.12 -0.2
175,943 + MPMX19_04780 0.15 +0.2
175,944 - MPMX19_04780 0.16 -1.4
175,944 - MPMX19_04780 0.16 +0.5
175,944 - MPMX19_04780 0.16 +0.4
175,973 + MPMX19_04780 0.19 -1.4
175,973 + MPMX19_04780 0.19 +1.4
175,973 + MPMX19_04780 0.19 -0.2
175,973 + MPMX19_04780 0.19 -0.4
175,973 + MPMX19_04780 0.19 -1.4
175,974 - MPMX19_04780 0.20 -0.0
175,974 - MPMX19_04780 0.20 -1.1
175,974 - MPMX19_04780 0.20 -2.7
175,996 + MPMX19_04780 0.22 -0.2
175,996 + MPMX19_04780 0.22 +0.6
175,996 + MPMX19_04780 0.22 -2.4
175,996 + MPMX19_04780 0.22 +0.3
175,996 + MPMX19_04780 0.22 -1.0
175,996 + MPMX19_04780 0.22 +0.8
175,996 + MPMX19_04780 0.22 +1.6
175,996 + MPMX19_04780 0.22 -0.8
175,997 + MPMX19_04780 0.23 -0.1
175,997 - MPMX19_04780 0.23 -1.4
175,997 - MPMX19_04780 0.23 +0.6
175,997 - MPMX19_04780 0.23 -0.4
175,997 - MPMX19_04780 0.23 -1.0
175,997 - MPMX19_04780 0.23 -2.7
176,132 + MPMX19_04780 0.41 +0.8
176,132 + MPMX19_04780 0.41 -0.4
176,133 - MPMX19_04780 0.41 +0.2
176,133 - MPMX19_04780 0.41 -1.4
176,267 + MPMX19_04780 0.59 +0.6
176,427 + MPMX19_04780 0.80 -0.7
176,447 + MPMX19_04780 0.83 -1.1
176,447 + MPMX19_04780 0.83 -1.1
176,447 + MPMX19_04780 0.83 +1.0
176,447 + MPMX19_04780 0.83 +0.6
176,447 + MPMX19_04780 0.83 +0.2
176,447 + MPMX19_04780 0.83 -1.7
176,447 + MPMX19_04780 0.83 -1.4
176,448 - MPMX19_04780 0.83 -0.1
176,448 - MPMX19_04780 0.83 -0.2
176,448 - MPMX19_04780 0.83 +0.4
176,448 - MPMX19_04780 0.83 -1.1
176,448 - MPMX19_04780 0.83 -0.3
176,448 - MPMX19_04780 0.83 -0.2
176,448 - MPMX19_04780 0.83 +1.0
176,448 - MPMX19_04780 0.83 +0.8
176,478 + MPMX19_04780 0.87 -0.7
176,478 + MPMX19_04780 0.87 -0.0
176,479 - MPMX19_04780 0.87 +0.6
176,479 - MPMX19_04780 0.87 +0.8
176,567 + -1.1
176,568 - +0.6
176,568 - +0.3
176,568 - -0.8
176,568 - -1.7
176,568 - -0.2
176,968 + MPMX19_04781 0.25 -1.1
176,969 - MPMX19_04781 0.25 +1.2
176,969 - MPMX19_04781 0.25 +0.2
176,969 - MPMX19_04781 0.25 +1.0
176,969 - MPMX19_04781 0.25 +0.2
176,969 - MPMX19_04781 0.25 +2.0
176,969 - MPMX19_04781 0.25 -1.0
176,969 - MPMX19_04781 0.25 -1.2
176,969 - MPMX19_04781 0.25 +0.6
176,969 - MPMX19_04781 0.25 -0.3
176,969 - MPMX19_04781 0.25 -0.2
176,969 - MPMX19_04781 0.25 +0.1
177,013 + MPMX19_04781 0.29 -1.2
177,013 + MPMX19_04781 0.29 +0.1
177,013 + MPMX19_04781 0.29 +0.8
177,013 + MPMX19_04781 0.29 -0.1
177,014 - MPMX19_04781 0.29 +0.1
177,014 - MPMX19_04781 0.29 -0.5
177,014 - MPMX19_04781 0.29 -1.2
177,519 + MPMX19_04781 0.76 +0.4
177,572 + MPMX19_04781 0.81 -0.6
177,740 + -0.9
177,740 + -0.2
177,849 + -1.4
177,850 - -0.7
177,857 + +0.6
177,901 - -0.0
177,941 + -0.8
178,226 + MPMX19_04782 0.15 -0.4
178,226 + MPMX19_04782 0.15 +1.6
178,226 + MPMX19_04782 0.15 +2.6
178,226 + MPMX19_04782 0.15 -0.9
178,226 + MPMX19_04782 0.15 +0.4
178,226 + MPMX19_04782 0.15 -0.8
178,226 + MPMX19_04782 0.15 -0.5
178,226 + MPMX19_04782 0.15 -0.1
178,226 + MPMX19_04782 0.15 -2.1
178,226 + MPMX19_04782 0.15 +0.2
178,226 + MPMX19_04782 0.15 -0.0
178,226 + MPMX19_04782 0.15 -0.2
178,226 + MPMX19_04782 0.15 +0.5
178,226 + MPMX19_04782 0.15 -0.3
178,226 + MPMX19_04782 0.15 +1.1
178,226 + MPMX19_04782 0.15 +0.6
178,226 + MPMX19_04782 0.15 -0.4
178,226 + MPMX19_04782 0.15 -1.8
178,226 + MPMX19_04782 0.15 -1.1
178,226 + MPMX19_04782 0.15 -0.4
178,227 - MPMX19_04782 0.16 -1.0
178,227 - MPMX19_04782 0.16 -0.4
178,227 - MPMX19_04782 0.16 +0.6
178,227 - MPMX19_04782 0.16 -0.4
178,227 - MPMX19_04782 0.16 -0.7
178,227 - MPMX19_04782 0.16 +0.8
178,227 - MPMX19_04782 0.16 +0.6
178,227 - MPMX19_04782 0.16 +0.8
178,227 - MPMX19_04782 0.16 -0.1
178,227 - MPMX19_04782 0.16 -0.7
178,227 - MPMX19_04782 0.16 -0.5
178,227 - MPMX19_04782 0.16 -1.9
178,227 - MPMX19_04782 0.16 +0.1
178,227 - MPMX19_04782 0.16 -0.0
178,227 - MPMX19_04782 0.16 +0.8
178,227 - MPMX19_04782 0.16 -0.8
178,227 - MPMX19_04782 0.16 -0.2
178,227 - MPMX19_04782 0.16 -1.0
178,347 + MPMX19_04782 0.24 +2.6
178,347 + MPMX19_04782 0.24 -0.9
178,348 - MPMX19_04782 0.24 -1.2
178,348 - MPMX19_04782 0.24 +0.2
178,348 - MPMX19_04782 0.24 -0.6
178,348 - MPMX19_04782 0.24 -1.1
178,431 + MPMX19_04782 0.30 +1.6
178,476 + MPMX19_04782 0.33 -0.1
178,476 + MPMX19_04782 0.33 -0.6
178,476 + MPMX19_04782 0.33 +0.8
178,476 + MPMX19_04782 0.33 +0.2
178,476 + MPMX19_04782 0.33 -0.4
178,476 + MPMX19_04782 0.33 -0.8
178,476 + MPMX19_04782 0.33 -1.8
178,476 + MPMX19_04782 0.33 -0.4
178,477 - MPMX19_04782 0.33 -0.6
178,477 - MPMX19_04782 0.33 -0.9
178,477 - MPMX19_04782 0.33 -1.3
178,477 - MPMX19_04782 0.33 -0.8
178,477 - MPMX19_04782 0.33 -0.7
178,477 - MPMX19_04782 0.33 +0.1
178,624 - MPMX19_04782 0.44 -0.1
178,719 + MPMX19_04782 0.50 -1.1
178,719 + MPMX19_04782 0.50 -2.0
178,719 + MPMX19_04782 0.50 +0.2
178,719 + MPMX19_04782 0.50 -0.9
178,719 + MPMX19_04782 0.50 -0.9
178,719 + MPMX19_04782 0.50 +0.7
178,719 + MPMX19_04782 0.50 -0.9
178,720 - MPMX19_04782 0.50 -0.0
178,720 - MPMX19_04782 0.50 -0.3
178,720 - MPMX19_04782 0.50 -0.8
178,720 - MPMX19_04782 0.50 +0.5
178,720 - MPMX19_04782 0.50 +0.2
178,720 - MPMX19_04782 0.50 +0.6
178,720 - MPMX19_04782 0.50 +1.0
178,720 - MPMX19_04782 0.50 -0.6
178,720 - MPMX19_04782 0.50 -0.6
178,720 - MPMX19_04782 0.50 -1.2
178,720 - MPMX19_04782 0.50 +0.2
178,720 - MPMX19_04782 0.50 +0.4

Or see this region's nucleotide sequence