Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04438

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04437 and MPMX19_04438 are separated by 43 nucleotidesMPMX19_04438 and MPMX19_04439 are separated by 293 nucleotides MPMX19_04437: MPMX19_04437 - Oxalyl-CoA decarboxylase, at 802,613 to 804,376 _04437 MPMX19_04438: MPMX19_04438 - hypothetical protein, at 804,420 to 805,109 _04438 MPMX19_04439: MPMX19_04439 - Pca regulon regulatory protein, at 805,403 to 806,236 _04439 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 803.652 kb on + strand, within MPMX19_04437at 803.652 kb on + strand, within MPMX19_04437at 803.652 kb on + strand, within MPMX19_04437at 803.652 kb on + strand, within MPMX19_04437at 803.653 kb on - strand, within MPMX19_04437at 803.653 kb on - strand, within MPMX19_04437at 803.653 kb on - strand, within MPMX19_04437at 803.653 kb on - strand, within MPMX19_04437at 803.740 kb on - strand, within MPMX19_04437at 803.740 kb on - strand, within MPMX19_04437at 803.835 kb on + strand, within MPMX19_04437at 803.835 kb on + strand, within MPMX19_04437at 803.835 kb on + strand, within MPMX19_04437at 803.835 kb on + strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.836 kb on - strand, within MPMX19_04437at 803.970 kb on + strand, within MPMX19_04437at 803.970 kb on + strand, within MPMX19_04437at 803.970 kb on + strand, within MPMX19_04437at 803.971 kb on - strand, within MPMX19_04437at 803.971 kb on - strand, within MPMX19_04437at 803.971 kb on - strand, within MPMX19_04437at 804.229 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.243 kb on + strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.244 kb on - strandat 804.349 kb on + strandat 804.349 kb on + strandat 804.349 kb on + strandat 804.350 kb on - strandat 804.350 kb on - strandat 804.350 kb on - strandat 804.350 kb on - strandat 804.350 kb on - strandat 804.350 kb on - strandat 804.370 kb on + strandat 804.370 kb on + strandat 804.370 kb on + strandat 804.370 kb on + strandat 804.370 kb on + strandat 804.371 kb on - strandat 804.371 kb on - strandat 804.371 kb on - strandat 804.371 kb on - strandat 804.371 kb on - strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.376 kb on + strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.377 kb on - strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.694 kb on + strand, within MPMX19_04438at 804.694 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.007 kb on - strand, within MPMX19_04438at 805.007 kb on - strand, within MPMX19_04438at 805.045 kb on + strandat 805.046 kb on + strandat 805.046 kb on - strandat 805.046 kb on - strandat 805.046 kb on - strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.207 kb on - strandat 805.207 kb on - strandat 805.245 kb on + strandat 805.312 kb on + strandat 805.312 kb on + strandat 805.313 kb on - strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.386 kb on - strandat 805.386 kb on - strandat 805.386 kb on - strandat 805.628 kb on + strand, within MPMX19_04439at 805.628 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.805 kb on - strand, within MPMX19_04439at 805.805 kb on - strand, within MPMX19_04439at 805.871 kb on + strand, within MPMX19_04439at 805.871 kb on + strand, within MPMX19_04439at 805.872 kb on - strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.932 kb on - strand, within MPMX19_04439at 805.932 kb on - strand, within MPMX19_04439

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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803,652 + MPMX19_04437 0.59 +0.8
803,652 + MPMX19_04437 0.59 -1.2
803,652 + MPMX19_04437 0.59 -0.7
803,652 + MPMX19_04437 0.59 -1.2
803,653 - MPMX19_04437 0.59 -0.8
803,653 - MPMX19_04437 0.59 -0.4
803,653 - MPMX19_04437 0.59 -1.5
803,653 - MPMX19_04437 0.59 -1.5
803,740 - MPMX19_04437 0.64 +0.4
803,740 - MPMX19_04437 0.64 -0.5
803,835 + MPMX19_04437 0.69 -1.0
803,835 + MPMX19_04437 0.69 +0.3
803,835 + MPMX19_04437 0.69 -0.9
803,835 + MPMX19_04437 0.69 -3.0
803,836 - MPMX19_04437 0.69 +1.4
803,836 - MPMX19_04437 0.69 +0.2
803,836 - MPMX19_04437 0.69 +1.0
803,836 - MPMX19_04437 0.69 -1.0
803,836 - MPMX19_04437 0.69 -0.8
803,836 - MPMX19_04437 0.69 -1.5
803,970 + MPMX19_04437 0.77 -1.2
803,970 + MPMX19_04437 0.77 -1.3
803,970 + MPMX19_04437 0.77 -1.3
803,971 - MPMX19_04437 0.77 -1.1
803,971 - MPMX19_04437 0.77 +0.2
803,971 - MPMX19_04437 0.77 -0.7
804,229 + -0.1
804,243 + -0.2
804,243 + +2.0
804,243 + -0.0
804,243 + -0.1
804,243 + -2.1
804,243 + -1.0
804,243 + -1.1
804,243 + -2.1
804,243 + -0.9
804,243 + -0.3
804,243 + +1.2
804,243 + -0.6
804,243 + -1.2
804,243 + -0.7
804,243 + -1.2
804,243 + -1.8
804,243 + -0.8
804,243 + -1.6
804,244 - -0.1
804,244 - -2.8
804,244 - +0.3
804,244 - -0.0
804,244 - -0.9
804,244 - -0.5
804,244 - +0.2
804,244 - +0.1
804,244 - +0.4
804,244 - +0.6
804,244 - -0.2
804,244 - -1.7
804,244 - -1.2
804,349 + -1.3
804,349 + -0.9
804,349 + -0.9
804,350 - +0.7
804,350 - +0.4
804,350 - -1.0
804,350 - -1.0
804,350 - +1.6
804,350 - -0.5
804,370 + -1.2
804,370 + -0.4
804,370 + -0.9
804,370 + -0.3
804,370 + -0.4
804,371 - +0.1
804,371 - -0.8
804,371 - +0.2
804,371 - -0.4
804,371 - +0.6
804,376 + +0.1
804,376 + +1.8
804,376 + -1.2
804,376 + -0.5
804,376 + -0.6
804,376 + +0.2
804,376 + -0.8
804,376 + +0.2
804,376 + +1.8
804,376 + -0.4
804,376 + -1.7
804,376 + +0.8
804,376 + +0.1
804,376 + -0.8
804,376 + -0.9
804,376 + -0.4
804,376 + -0.1
804,376 + +0.4
804,376 + -2.3
804,377 - -0.6
804,377 - +0.8
804,377 - -0.6
804,377 - -1.1
804,377 - -0.2
804,377 - -0.1
804,377 - +1.4
804,377 - -1.6
804,377 - -0.2
804,377 - -0.2
804,377 - +0.1
804,377 - +0.4
804,377 - -0.2
804,377 - -1.7
804,377 - -0.2
804,377 - +1.1
804,377 - -0.9
804,377 - -0.8
804,377 - -1.7
804,377 - +0.6
804,377 - -0.5
804,377 - -0.7
804,377 - -0.1
804,377 - -0.9
804,451 + -0.8
804,451 + -0.4
804,451 + -1.7
804,451 + -0.4
804,451 + -1.8
804,452 - -1.2
804,452 - -2.1
804,452 - -0.9
804,452 - +0.2
804,452 - -2.2
804,452 - -2.0
804,452 - -1.1
804,452 - -1.2
804,602 + MPMX19_04438 0.26 -0.6
804,602 + MPMX19_04438 0.26 -0.2
804,602 + MPMX19_04438 0.26 -0.6
804,602 + MPMX19_04438 0.26 +0.1
804,602 + MPMX19_04438 0.26 +0.4
804,602 + MPMX19_04438 0.26 -2.7
804,602 + MPMX19_04438 0.26 +0.1
804,603 - MPMX19_04438 0.27 -0.6
804,603 - MPMX19_04438 0.27 +1.0
804,603 - MPMX19_04438 0.27 -1.4
804,603 - MPMX19_04438 0.27 -0.9
804,603 - MPMX19_04438 0.27 +2.0
804,603 - MPMX19_04438 0.27 -0.4
804,603 - MPMX19_04438 0.27 +1.2
804,603 - MPMX19_04438 0.27 -0.8
804,603 - MPMX19_04438 0.27 -0.3
804,694 + MPMX19_04438 0.40 +0.1
804,694 + MPMX19_04438 0.40 +0.2
804,728 + MPMX19_04438 0.45 +1.3
804,728 + MPMX19_04438 0.45 -0.2
804,728 + MPMX19_04438 0.45 +0.1
804,729 - MPMX19_04438 0.45 -0.5
804,729 - MPMX19_04438 0.45 -1.3
804,729 - MPMX19_04438 0.45 -1.6
804,729 - MPMX19_04438 0.45 -0.1
804,729 - MPMX19_04438 0.45 -0.9
804,729 - MPMX19_04438 0.45 -0.5
804,729 - MPMX19_04438 0.45 -0.7
804,729 - MPMX19_04438 0.45 -0.0
804,729 - MPMX19_04438 0.45 -0.9
804,729 - MPMX19_04438 0.45 +0.1
804,730 + MPMX19_04438 0.45 +0.4
804,730 + MPMX19_04438 0.45 -0.3
804,730 + MPMX19_04438 0.45 +1.4
804,730 + MPMX19_04438 0.45 -0.9
804,730 + MPMX19_04438 0.45 -1.1
804,731 - MPMX19_04438 0.45 -2.0
804,731 - MPMX19_04438 0.45 +1.6
804,731 - MPMX19_04438 0.45 +0.3
804,731 - MPMX19_04438 0.45 -0.3
804,731 - MPMX19_04438 0.45 -0.2
804,731 - MPMX19_04438 0.45 -1.9
805,006 + MPMX19_04438 0.85 +1.0
805,006 + MPMX19_04438 0.85 +2.0
805,006 + MPMX19_04438 0.85 +1.4
805,006 + MPMX19_04438 0.85 -1.5
805,006 + MPMX19_04438 0.85 +0.4
805,006 + MPMX19_04438 0.85 +0.1
805,006 + MPMX19_04438 0.85 +0.5
805,007 - MPMX19_04438 0.85 +0.6
805,007 - MPMX19_04438 0.85 -0.2
805,045 + +0.2
805,046 + +0.5
805,046 - -1.6
805,046 - -0.8
805,046 - +0.1
805,206 + -0.9
805,206 + -0.9
805,206 + -0.4
805,206 + -1.0
805,207 - +0.1
805,207 - -1.3
805,245 + -1.2
805,312 + -0.9
805,312 + +0.2
805,313 - +0.6
805,385 + +0.4
805,385 + -1.5
805,385 + +1.4
805,385 + -0.4
805,386 - -0.8
805,386 - -1.3
805,386 - -0.9
805,628 + MPMX19_04439 0.27 -0.6
805,628 + MPMX19_04439 0.27 -1.7
805,802 + MPMX19_04439 0.48 -1.2
805,802 + MPMX19_04439 0.48 -1.2
805,802 + MPMX19_04439 0.48 -0.9
805,802 + MPMX19_04439 0.48 -0.3
805,802 + MPMX19_04439 0.48 -0.3
805,802 + MPMX19_04439 0.48 +0.5
805,802 + MPMX19_04439 0.48 -0.7
805,802 + MPMX19_04439 0.48 -0.6
805,802 + MPMX19_04439 0.48 +1.4
805,802 + MPMX19_04439 0.48 -0.4
805,802 + MPMX19_04439 0.48 +0.1
805,802 + MPMX19_04439 0.48 -0.3
805,802 + MPMX19_04439 0.48 -0.5
805,802 + MPMX19_04439 0.48 -2.4
805,802 + MPMX19_04439 0.48 +1.0
805,802 + MPMX19_04439 0.48 +1.0
805,802 + MPMX19_04439 0.48 +0.8
805,803 - MPMX19_04439 0.48 -1.8
805,803 - MPMX19_04439 0.48 +1.4
805,803 - MPMX19_04439 0.48 +1.6
805,803 - MPMX19_04439 0.48 -1.8
805,803 - MPMX19_04439 0.48 +1.1
805,803 - MPMX19_04439 0.48 -0.2
805,803 - MPMX19_04439 0.48 -0.4
805,803 - MPMX19_04439 0.48 +0.2
805,803 - MPMX19_04439 0.48 -0.2
805,803 - MPMX19_04439 0.48 +0.4
805,803 - MPMX19_04439 0.48 +0.1
805,803 - MPMX19_04439 0.48 -0.9
805,803 - MPMX19_04439 0.48 -1.4
805,803 - MPMX19_04439 0.48 +0.4
805,803 - MPMX19_04439 0.48 +0.8
805,803 - MPMX19_04439 0.48 -2.3
805,803 - MPMX19_04439 0.48 -0.9
805,803 - MPMX19_04439 0.48 -1.6
805,804 + MPMX19_04439 0.48 -0.9
805,804 + MPMX19_04439 0.48 -0.8
805,804 + MPMX19_04439 0.48 -0.6
805,805 - MPMX19_04439 0.48 +0.4
805,805 - MPMX19_04439 0.48 +0.4
805,871 + MPMX19_04439 0.56 +2.1
805,871 + MPMX19_04439 0.56 -1.2
805,872 - MPMX19_04439 0.56 -1.7
805,931 + MPMX19_04439 0.63 -1.8
805,931 + MPMX19_04439 0.63 +0.6
805,931 + MPMX19_04439 0.63 -1.6
805,931 + MPMX19_04439 0.63 +2.4
805,932 - MPMX19_04439 0.63 -0.8
805,932 - MPMX19_04439 0.63 -0.6

Or see this region's nucleotide sequence