Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04257

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04256 and MPMX19_04257 are separated by 172 nucleotidesMPMX19_04257 and MPMX19_04258 are separated by 158 nucleotides MPMX19_04256: MPMX19_04256 - Photosystem I assembly protein Ycf3, at 613,250 to 617,269 _04256 MPMX19_04257: MPMX19_04257 - D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase, at 617,442 to 618,167 _04257 MPMX19_04258: MPMX19_04258 - hypothetical protein, at 618,326 to 619,435 _04258 Position (kb) 617 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 616.853 kb on + strand, within MPMX19_04256at 616.853 kb on + strand, within MPMX19_04256at 616.853 kb on + strand, within MPMX19_04256at 616.853 kb on + strand, within MPMX19_04256at 616.853 kb on + strand, within MPMX19_04256at 616.853 kb on + strand, within MPMX19_04256at 616.854 kb on - strand, within MPMX19_04256at 616.854 kb on - strand, within MPMX19_04256at 616.854 kb on - strand, within MPMX19_04256at 616.854 kb on - strand, within MPMX19_04256at 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.919 kb on + strandat 616.920 kb on - strandat 616.920 kb on - strandat 616.920 kb on - strandat 616.920 kb on - strandat 617.052 kb on + strandat 617.052 kb on + strandat 617.052 kb on + strandat 617.053 kb on - strandat 617.053 kb on - strandat 617.329 kb on - strandat 617.335 kb on + strandat 617.335 kb on + strandat 617.335 kb on + strandat 617.336 kb on - strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.386 kb on + strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.387 kb on - strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.470 kb on + strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.471 kb on - strandat 617.586 kb on + strand, within MPMX19_04257at 617.586 kb on + strand, within MPMX19_04257at 617.586 kb on + strand, within MPMX19_04257at 617.586 kb on + strand, within MPMX19_04257at 617.586 kb on + strand, within MPMX19_04257at 617.587 kb on - strand, within MPMX19_04257at 617.587 kb on - strand, within MPMX19_04257at 617.587 kb on - strand, within MPMX19_04257at 617.587 kb on - strand, within MPMX19_04257at 617.587 kb on - strand, within MPMX19_04257at 617.598 kb on + strand, within MPMX19_04257at 617.598 kb on + strand, within MPMX19_04257at 617.599 kb on - strand, within MPMX19_04257at 617.599 kb on - strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.742 kb on + strand, within MPMX19_04257at 617.743 kb on - strand, within MPMX19_04257at 617.743 kb on - strand, within MPMX19_04257at 617.743 kb on - strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.979 kb on + strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 617.980 kb on - strand, within MPMX19_04257at 618.206 kb on + strandat 618.206 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.291 kb on + strandat 618.292 kb on - strandat 618.292 kb on - strandat 618.292 kb on - strandat 618.292 kb on - strandat 618.292 kb on - strandat 618.312 kb on + strandat 618.312 kb on + strandat 618.596 kb on + strand, within MPMX19_04258at 618.615 kb on - strand, within MPMX19_04258at 618.734 kb on + strand, within MPMX19_04258at 618.735 kb on - strand, within MPMX19_04258at 618.779 kb on + strand, within MPMX19_04258at 618.780 kb on - strand, within MPMX19_04258

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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616,853 + MPMX19_04256 0.90 +0.7
616,853 + MPMX19_04256 0.90 -1.1
616,853 + MPMX19_04256 0.90 -0.6
616,853 + MPMX19_04256 0.90 -1.4
616,853 + MPMX19_04256 0.90 +0.1
616,853 + MPMX19_04256 0.90 -0.9
616,854 - MPMX19_04256 0.90 -0.6
616,854 - MPMX19_04256 0.90 -1.4
616,854 - MPMX19_04256 0.90 +1.0
616,854 - MPMX19_04256 0.90 +0.0
616,919 + -0.6
616,919 + +0.4
616,919 + -0.7
616,919 + -0.6
616,919 + -0.4
616,919 + -0.9
616,919 + -1.3
616,919 + +0.1
616,919 + -1.8
616,920 - -1.6
616,920 - -2.5
616,920 - -0.4
616,920 - +0.7
617,052 + -0.9
617,052 + +0.7
617,052 + -0.3
617,053 - -0.2
617,053 - +0.6
617,329 - -1.1
617,335 + -1.4
617,335 + -0.6
617,335 + -0.8
617,336 - -1.1
617,386 + -1.3
617,386 + -0.2
617,386 + -0.6
617,386 + -1.1
617,386 + -0.3
617,386 + +0.7
617,386 + -1.0
617,386 + -0.8
617,386 + +0.1
617,386 + -1.1
617,387 - +1.4
617,387 - +0.3
617,387 - -0.8
617,387 - -0.6
617,387 - -0.7
617,387 - -1.4
617,387 - -2.3
617,387 - -0.4
617,387 - +0.2
617,387 - +2.4
617,387 - -0.5
617,387 - -0.2
617,470 + -1.1
617,470 + -1.0
617,470 + -0.3
617,470 + -0.9
617,470 + +0.7
617,470 + -2.3
617,470 + -1.5
617,470 + -2.9
617,470 + -1.3
617,470 + -3.2
617,470 + -0.5
617,470 + -2.1
617,470 + -2.1
617,470 + +0.8
617,470 + -0.4
617,470 + -1.3
617,470 + -2.0
617,470 + -0.3
617,470 + -0.7
617,470 + -2.5
617,470 + -0.7
617,470 + +0.3
617,470 + -1.0
617,471 - -1.4
617,471 - -0.2
617,471 - -1.1
617,471 - -0.6
617,471 - -0.4
617,471 - -1.5
617,471 - +0.8
617,471 - -1.1
617,471 - -1.8
617,471 - -0.4
617,471 - -0.6
617,471 - -0.3
617,471 - -2.0
617,471 - -2.4
617,586 + MPMX19_04257 0.20 -1.9
617,586 + MPMX19_04257 0.20 -1.8
617,586 + MPMX19_04257 0.20 -1.9
617,586 + MPMX19_04257 0.20 -1.1
617,586 + MPMX19_04257 0.20 -1.5
617,587 - MPMX19_04257 0.20 +0.1
617,587 - MPMX19_04257 0.20 -1.4
617,587 - MPMX19_04257 0.20 -0.7
617,587 - MPMX19_04257 0.20 -1.0
617,587 - MPMX19_04257 0.20 -0.7
617,598 + MPMX19_04257 0.21 -2.7
617,598 + MPMX19_04257 0.21 -0.0
617,599 - MPMX19_04257 0.22 -1.1
617,599 - MPMX19_04257 0.22 +0.4
617,742 + MPMX19_04257 0.41 -2.3
617,742 + MPMX19_04257 0.41 -0.2
617,742 + MPMX19_04257 0.41 +0.1
617,742 + MPMX19_04257 0.41 -1.1
617,742 + MPMX19_04257 0.41 -1.1
617,742 + MPMX19_04257 0.41 -0.4
617,743 - MPMX19_04257 0.41 +0.1
617,743 - MPMX19_04257 0.41 +0.4
617,743 - MPMX19_04257 0.41 -0.1
617,979 + MPMX19_04257 0.74 +1.1
617,979 + MPMX19_04257 0.74 -0.1
617,979 + MPMX19_04257 0.74 -0.9
617,979 + MPMX19_04257 0.74 -0.8
617,979 + MPMX19_04257 0.74 -0.5
617,979 + MPMX19_04257 0.74 +0.6
617,979 + MPMX19_04257 0.74 -1.1
617,979 + MPMX19_04257 0.74 -0.9
617,979 + MPMX19_04257 0.74 +0.0
617,979 + MPMX19_04257 0.74 -1.3
617,979 + MPMX19_04257 0.74 -1.1
617,980 - MPMX19_04257 0.74 -1.3
617,980 - MPMX19_04257 0.74 -1.7
617,980 - MPMX19_04257 0.74 -1.0
617,980 - MPMX19_04257 0.74 -1.1
617,980 - MPMX19_04257 0.74 +1.1
617,980 - MPMX19_04257 0.74 +0.4
617,980 - MPMX19_04257 0.74 -0.2
617,980 - MPMX19_04257 0.74 -1.1
617,980 - MPMX19_04257 0.74 -0.6
617,980 - MPMX19_04257 0.74 +0.1
617,980 - MPMX19_04257 0.74 -0.1
617,980 - MPMX19_04257 0.74 -1.3
617,980 - MPMX19_04257 0.74 +0.0
618,206 + -0.9
618,206 + +0.4
618,291 + -1.2
618,291 + -0.0
618,291 + -0.7
618,291 + -1.1
618,291 + +1.4
618,291 + -0.3
618,291 + -0.4
618,291 + +0.2
618,292 - -1.1
618,292 - -1.4
618,292 - -1.6
618,292 - +0.2
618,292 - -1.4
618,312 + +0.8
618,312 + -0.9
618,596 + MPMX19_04258 0.24 -1.4
618,615 - MPMX19_04258 0.26 -2.4
618,734 + MPMX19_04258 0.37 -1.3
618,735 - MPMX19_04258 0.37 -1.8
618,779 + MPMX19_04258 0.41 -0.6
618,780 - MPMX19_04258 0.41 -0.9

Or see this region's nucleotide sequence