Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04254 and MPMX19_04255 are separated by 100 nucleotides MPMX19_04255 and MPMX19_04256 overlap by 4 nucleotides
MPMX19_04254: MPMX19_04254 - NADP-dependent malic enzyme, at 608,807 to 611,119
_04254
MPMX19_04255: MPMX19_04255 - Lipopolysaccharide assembly protein B, at 611,220 to 613,253
_04255
MPMX19_04256: MPMX19_04256 - Photosystem I assembly protein Ycf3, at 613,250 to 617,269
_04256
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.322 kb on + strand, within MPMX19_04254 at 610.322 kb on + strand, within MPMX19_04254 at 610.323 kb on - strand, within MPMX19_04254 at 610.598 kb on + strand, within MPMX19_04254 at 610.599 kb on - strand, within MPMX19_04254 at 610.599 kb on - strand, within MPMX19_04254 at 610.599 kb on - strand, within MPMX19_04254 at 611.117 kb on + strand at 611.118 kb on - strand at 611.118 kb on - strand at 611.118 kb on - strand at 611.118 kb on - strand at 611.118 kb on - strand at 611.183 kb on + strand at 611.183 kb on + strand at 611.183 kb on + strand at 611.184 kb on - strand at 611.184 kb on - strand at 611.184 kb on - strand at 611.362 kb on - strand at 611.362 kb on - strand at 611.362 kb on - strand at 611.362 kb on - strand at 611.502 kb on + strand, within MPMX19_04255 at 611.503 kb on - strand, within MPMX19_04255 at 611.520 kb on + strand, within MPMX19_04255 at 611.521 kb on - strand, within MPMX19_04255 at 611.668 kb on - strand, within MPMX19_04255 at 611.697 kb on + strand, within MPMX19_04255 at 611.698 kb on - strand, within MPMX19_04255 at 612.202 kb on - strand, within MPMX19_04255 at 612.202 kb on - strand, within MPMX19_04255 at 612.202 kb on - strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.375 kb on + strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.376 kb on - strand, within MPMX19_04255 at 612.843 kb on + strand, within MPMX19_04255 at 612.844 kb on - strand, within MPMX19_04255 at 612.844 kb on - strand, within MPMX19_04255 at 612.874 kb on + strand, within MPMX19_04255 at 612.874 kb on + strand, within MPMX19_04255 at 612.875 kb on - strand, within MPMX19_04255 at 612.875 kb on - strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.909 kb on + strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 612.910 kb on - strand, within MPMX19_04255 at 613.202 kb on + strand at 613.202 kb on + strand at 613.204 kb on + strand at 613.205 kb on - strand at 613.227 kb on - strand at 613.326 kb on - strand at 613.326 kb on - strand at 613.326 kb on - strand at 613.405 kb on + strand at 613.406 kb on - strand at 613.466 kb on + strand at 613.466 kb on + strand at 613.467 kb on - strand at 613.467 kb on - strand at 613.467 kb on - strand at 613.631 kb on + strand at 613.631 kb on + strand at 613.632 kb on - strand at 613.632 kb on - strand at 613.632 kb on - strand at 614.008 kb on + strand, within MPMX19_04256
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 610,322 + MPMX19_04254 0.65 -2.1 610,322 + MPMX19_04254 0.65 -0.5 610,323 - MPMX19_04254 0.66 -0.6 610,598 + MPMX19_04254 0.77 -1.1 610,599 - MPMX19_04254 0.77 +0.1 610,599 - MPMX19_04254 0.77 -0.8 610,599 - MPMX19_04254 0.77 +0.2 611,117 + -2.4 611,118 - +1.1 611,118 - +2.4 611,118 - -0.3 611,118 - -0.1 611,118 - -1.7 611,183 + +0.2 611,183 + -2.1 611,183 + -1.9 611,184 - -1.2 611,184 - -3.5 611,184 - -1.9 611,362 - +0.1 611,362 - -0.6 611,362 - +0.6 611,362 - -0.2 611,502 + MPMX19_04255 0.14 +0.8 611,503 - MPMX19_04255 0.14 -0.8 611,520 + MPMX19_04255 0.15 -0.3 611,521 - MPMX19_04255 0.15 -2.0 611,668 - MPMX19_04255 0.22 -0.2 611,697 + MPMX19_04255 0.23 -0.8 611,698 - MPMX19_04255 0.24 -1.3 612,202 - MPMX19_04255 0.48 -1.8 612,202 - MPMX19_04255 0.48 -0.5 612,202 - MPMX19_04255 0.48 -2.2 612,375 + MPMX19_04255 0.57 -0.4 612,375 + MPMX19_04255 0.57 -1.4 612,375 + MPMX19_04255 0.57 +0.2 612,375 + MPMX19_04255 0.57 +0.9 612,375 + MPMX19_04255 0.57 -0.6 612,375 + MPMX19_04255 0.57 -0.3 612,375 + MPMX19_04255 0.57 +1.2 612,375 + MPMX19_04255 0.57 -0.8 612,376 - MPMX19_04255 0.57 -1.4 612,376 - MPMX19_04255 0.57 -0.9 612,376 - MPMX19_04255 0.57 +0.4 612,376 - MPMX19_04255 0.57 -0.2 612,376 - MPMX19_04255 0.57 -0.6 612,376 - MPMX19_04255 0.57 -0.6 612,843 + MPMX19_04255 0.80 -1.9 612,844 - MPMX19_04255 0.80 -0.6 612,844 - MPMX19_04255 0.80 -0.8 612,874 + MPMX19_04255 0.81 -0.3 612,874 + MPMX19_04255 0.81 -0.1 612,875 - MPMX19_04255 0.81 +0.9 612,875 - MPMX19_04255 0.81 -1.5 612,909 + MPMX19_04255 0.83 -0.4 612,909 + MPMX19_04255 0.83 +0.8 612,909 + MPMX19_04255 0.83 -1.6 612,909 + MPMX19_04255 0.83 -0.9 612,909 + MPMX19_04255 0.83 +0.2 612,909 + MPMX19_04255 0.83 -1.4 612,910 - MPMX19_04255 0.83 -0.9 612,910 - MPMX19_04255 0.83 -2.0 612,910 - MPMX19_04255 0.83 -2.2 612,910 - MPMX19_04255 0.83 -0.2 612,910 - MPMX19_04255 0.83 -0.9 612,910 - MPMX19_04255 0.83 +1.2 612,910 - MPMX19_04255 0.83 -0.7 612,910 - MPMX19_04255 0.83 -0.2 612,910 - MPMX19_04255 0.83 -1.8 612,910 - MPMX19_04255 0.83 -0.4 612,910 - MPMX19_04255 0.83 -1.1 613,202 + -2.1 613,202 + +0.7 613,204 + -1.0 613,205 - -0.6 613,227 - -1.7 613,326 - -1.0 613,326 - +0.1 613,326 - -1.3 613,405 + -1.1 613,406 - -1.9 613,466 + -0.1 613,466 + -0.1 613,467 - +0.6 613,467 - -0.4 613,467 - +1.2 613,631 + -1.2 613,631 + -2.5 613,632 - +0.5 613,632 - +0.8 613,632 - +1.2 614,008 + MPMX19_04256 0.19 -1.7
Or see this region's nucleotide sequence