Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04025

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04023 and MPMX19_04024 are separated by 338 nucleotidesMPMX19_04024 and MPMX19_04025 are separated by 105 nucleotidesMPMX19_04025 and MPMX19_04026 are separated by 226 nucleotides MPMX19_04023: MPMX19_04023 - HTH-type transcriptional regulator XynR, at 319,706 to 320,506 _04023 MPMX19_04024: MPMX19_04024 - hypothetical protein, at 320,845 to 321,051 _04024 MPMX19_04025: MPMX19_04025 - hypothetical protein, at 321,157 to 321,384 _04025 MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474 _04026 Position (kb) 321 322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.321 kb on + strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.322 kb on - strand, within MPMX19_04023at 320.614 kb on + strandat 320.614 kb on + strandat 320.614 kb on + strandat 320.615 kb on - strandat 320.637 kb on - strandat 320.637 kb on - strandat 320.646 kb on + strandat 320.647 kb on - strandat 320.663 kb on + strandat 320.664 kb on - strandat 320.664 kb on - strandat 320.675 kb on - strandat 320.709 kb on - strandat 320.732 kb on + strandat 320.732 kb on + strandat 320.780 kb on - strandat 320.780 kb on - strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.854 kb on + strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 320.855 kb on - strandat 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.192 kb on + strand, within MPMX19_04025at 321.193 kb on - strand, within MPMX19_04025at 321.207 kb on + strand, within MPMX19_04025at 321.307 kb on + strand, within MPMX19_04025at 321.307 kb on + strand, within MPMX19_04025at 321.307 kb on + strand, within MPMX19_04025at 321.307 kb on + strand, within MPMX19_04025at 321.308 kb on - strand, within MPMX19_04025at 321.308 kb on - strand, within MPMX19_04025at 321.308 kb on - strand, within MPMX19_04025at 321.308 kb on - strand, within MPMX19_04025at 321.308 kb on - strand, within MPMX19_04025at 321.501 kb on + strandat 321.501 kb on + strandat 321.501 kb on + strandat 321.501 kb on + strandat 321.501 kb on + strandat 321.502 kb on - strandat 321.522 kb on + strandat 321.522 kb on + strandat 321.522 kb on + strandat 321.522 kb on + strandat 321.523 kb on - strandat 321.523 kb on - strandat 321.523 kb on - strandat 322.284 kb on + strand, within MPMX19_04026at 322.284 kb on + strand, within MPMX19_04026at 322.285 kb on - strand, within MPMX19_04026at 322.285 kb on - strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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320,321 + MPMX19_04023 0.77 -1.2
320,321 + MPMX19_04023 0.77 -1.2
320,321 + MPMX19_04023 0.77 -0.2
320,321 + MPMX19_04023 0.77 +0.1
320,321 + MPMX19_04023 0.77 +0.1
320,321 + MPMX19_04023 0.77 -0.6
320,321 + MPMX19_04023 0.77 -0.9
320,321 + MPMX19_04023 0.77 -0.9
320,321 + MPMX19_04023 0.77 -0.2
320,321 + MPMX19_04023 0.77 -2.7
320,322 - MPMX19_04023 0.77 -1.4
320,322 - MPMX19_04023 0.77 -0.9
320,322 - MPMX19_04023 0.77 -0.2
320,322 - MPMX19_04023 0.77 +0.1
320,322 - MPMX19_04023 0.77 +1.7
320,322 - MPMX19_04023 0.77 -1.1
320,322 - MPMX19_04023 0.77 -2.2
320,322 - MPMX19_04023 0.77 -0.1
320,322 - MPMX19_04023 0.77 +0.4
320,322 - MPMX19_04023 0.77 +0.4
320,322 - MPMX19_04023 0.77 +1.8
320,322 - MPMX19_04023 0.77 +1.4
320,322 - MPMX19_04023 0.77 -2.1
320,322 - MPMX19_04023 0.77 +0.8
320,322 - MPMX19_04023 0.77 +0.1
320,614 + -2.0
320,614 + -1.4
320,614 + -0.1
320,615 - -0.2
320,637 - -0.3
320,637 - +1.1
320,646 + +0.1
320,647 - +0.2
320,663 + +0.1
320,664 - +1.5
320,664 - -0.2
320,675 - -0.6
320,709 - -0.3
320,732 + -0.6
320,732 + -1.3
320,780 - +1.1
320,780 - +0.8
320,854 + -0.1
320,854 + -1.9
320,854 + -0.6
320,854 + -1.1
320,854 + +0.1
320,854 + +0.3
320,854 + +0.2
320,854 + -0.9
320,854 + -0.8
320,854 + -0.9
320,854 + -1.5
320,855 - +0.4
320,855 - +0.1
320,855 - -0.1
320,855 - -0.8
320,855 - +1.0
320,855 - -0.8
320,855 - -0.6
320,855 - -1.2
320,855 - -2.2
320,855 - -1.5
320,855 - -1.7
320,855 - -2.5
320,855 - -0.9
320,855 - +0.2
320,855 - -0.1
320,855 - -2.7
320,855 - -0.4
320,855 - -0.9
320,855 - +0.4
320,855 - +1.4
320,855 - -0.4
320,855 - -1.4
320,855 - -2.2
320,855 - -0.0
320,855 - +1.1
320,855 - +0.4
320,855 - -0.3
320,855 - -0.7
320,855 - +1.3
320,855 - -1.3
321,192 + MPMX19_04025 0.15 -0.4
321,192 + MPMX19_04025 0.15 -0.1
321,192 + MPMX19_04025 0.15 -1.6
321,192 + MPMX19_04025 0.15 -1.3
321,192 + MPMX19_04025 0.15 -0.4
321,192 + MPMX19_04025 0.15 +0.2
321,192 + MPMX19_04025 0.15 -0.6
321,193 - MPMX19_04025 0.16 -2.0
321,207 + MPMX19_04025 0.22 -0.2
321,307 + MPMX19_04025 0.66 -0.8
321,307 + MPMX19_04025 0.66 +0.2
321,307 + MPMX19_04025 0.66 -2.0
321,307 + MPMX19_04025 0.66 -2.6
321,308 - MPMX19_04025 0.66 +0.1
321,308 - MPMX19_04025 0.66 +0.4
321,308 - MPMX19_04025 0.66 -1.6
321,308 - MPMX19_04025 0.66 -1.0
321,308 - MPMX19_04025 0.66 -1.9
321,501 + -1.4
321,501 + +0.1
321,501 + -0.2
321,501 + +0.2
321,501 + -0.8
321,502 - -2.9
321,522 + +1.2
321,522 + -0.6
321,522 + -1.2
321,522 + +0.2
321,523 - -2.1
321,523 - +0.2
321,523 - +0.8
322,284 + MPMX19_04026 0.78 -1.2
322,284 + MPMX19_04026 0.78 -0.8
322,285 - MPMX19_04026 0.78 -0.8
322,285 - MPMX19_04026 0.78 -1.0
322,316 + MPMX19_04026 0.82 -1.1
322,316 + MPMX19_04026 0.82 -0.5
322,316 + MPMX19_04026 0.82 -1.5
322,316 + MPMX19_04026 0.82 +0.7
322,316 + MPMX19_04026 0.82 -1.7
322,316 + MPMX19_04026 0.82 +0.7
322,316 + MPMX19_04026 0.82 +0.5
322,316 + MPMX19_04026 0.82 -1.0
322,316 + MPMX19_04026 0.82 -0.3
322,317 - MPMX19_04026 0.82 -1.3
322,317 - MPMX19_04026 0.82 -0.7
322,317 - MPMX19_04026 0.82 -1.5
322,317 - MPMX19_04026 0.82 -0.7
322,317 - MPMX19_04026 0.82 -1.1
322,317 - MPMX19_04026 0.82 -0.6
322,317 - MPMX19_04026 0.82 -0.6

Or see this region's nucleotide sequence