Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03779

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03776 and MPMX19_03777 overlap by 4 nucleotidesMPMX19_03777 and MPMX19_03778 overlap by 4 nucleotidesMPMX19_03778 and MPMX19_03779 overlap by 1 nucleotidesMPMX19_03779 and MPMX19_03780 overlap by 1 nucleotidesMPMX19_03780 and MPMX19_03781 are separated by 9 nucleotides MPMX19_03776: MPMX19_03776 - hypothetical protein, at 20,132 to 20,497 _03776 MPMX19_03777: MPMX19_03777 - hypothetical protein, at 20,494 to 20,754 _03777 MPMX19_03778: MPMX19_03778 - hypothetical protein, at 20,751 to 21,245 _03778 MPMX19_03779: MPMX19_03779 - hypothetical protein, at 21,245 to 21,490 _03779 MPMX19_03780: MPMX19_03780 - hypothetical protein, at 21,490 to 22,416 _03780 MPMX19_03781: MPMX19_03781 - hypothetical protein, at 22,426 to 22,785 _03781 Position (kb) 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.806 kb on - strand, within MPMX19_03778at 21.121 kb on - strand, within MPMX19_03778at 21.828 kb on + strand, within MPMX19_03780at 21.828 kb on + strand, within MPMX19_03780at 21.828 kb on + strand, within MPMX19_03780at 21.828 kb on + strand, within MPMX19_03780at 21.829 kb on - strand, within MPMX19_03780at 21.829 kb on - strand, within MPMX19_03780at 21.829 kb on - strand, within MPMX19_03780at 21.829 kb on - strand, within MPMX19_03780at 21.835 kb on + strand, within MPMX19_03780at 21.835 kb on + strand, within MPMX19_03780at 21.835 kb on + strand, within MPMX19_03780at 21.835 kb on + strand, within MPMX19_03780at 21.836 kb on - strand, within MPMX19_03780at 21.836 kb on - strand, within MPMX19_03780at 21.836 kb on - strand, within MPMX19_03780at 21.836 kb on - strand, within MPMX19_03780at 21.836 kb on - strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.907 kb on + strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 21.908 kb on - strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.066 kb on + strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.067 kb on - strand, within MPMX19_03780at 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.345 kb on + strandat 22.346 kb on - strandat 22.346 kb on - strandat 22.346 kb on - strandat 22.346 kb on - strandat 22.346 kb on - strandat 22.346 kb on - strandat 22.357 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.381 kb on + strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.382 kb on - strandat 22.404 kb on - strandat 22.404 kb on - strandat 22.404 kb on - strandat 22.464 kb on + strand, within MPMX19_03781at 22.464 kb on + strand, within MPMX19_03781at 22.464 kb on + strand, within MPMX19_03781at 22.464 kb on + strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.465 kb on - strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.468 kb on + strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781at 22.469 kb on - strand, within MPMX19_03781

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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20,256 - MPMX19_03776 0.34 -0.3
20,256 - MPMX19_03776 0.34 -1.6
20,256 - MPMX19_03776 0.34 -0.2
20,256 - MPMX19_03776 0.34 -0.7
20,256 - MPMX19_03776 0.34 -0.6
20,256 - MPMX19_03776 0.34 -0.4
20,256 - MPMX19_03776 0.34 -0.0
20,256 - MPMX19_03776 0.34 -1.3
20,256 - MPMX19_03776 0.34 +1.1
20,256 - MPMX19_03776 0.34 -0.0
20,256 - MPMX19_03776 0.34 -0.4
20,256 - MPMX19_03776 0.34 +0.4
20,295 - MPMX19_03776 0.45 +0.8
20,295 - MPMX19_03776 0.45 +0.4
20,295 - MPMX19_03776 0.45 -1.1
20,295 - MPMX19_03776 0.45 +0.1
20,295 - MPMX19_03776 0.45 +1.7
20,764 - -0.2
20,764 - +0.8
20,764 - +0.7
20,764 - -1.7
20,764 - -0.3
20,806 - MPMX19_03778 0.11 +0.8
21,121 - MPMX19_03778 0.75 +1.2
21,828 + MPMX19_03780 0.36 +0.1
21,828 + MPMX19_03780 0.36 -1.6
21,828 + MPMX19_03780 0.36 -0.7
21,828 + MPMX19_03780 0.36 -1.2
21,829 - MPMX19_03780 0.37 -1.5
21,829 - MPMX19_03780 0.37 -1.4
21,829 - MPMX19_03780 0.37 -0.7
21,829 - MPMX19_03780 0.37 -0.9
21,835 + MPMX19_03780 0.37 +1.6
21,835 + MPMX19_03780 0.37 -0.9
21,835 + MPMX19_03780 0.37 -0.5
21,835 + MPMX19_03780 0.37 -0.7
21,836 - MPMX19_03780 0.37 +0.1
21,836 - MPMX19_03780 0.37 -0.9
21,836 - MPMX19_03780 0.37 -1.6
21,836 - MPMX19_03780 0.37 -1.7
21,836 - MPMX19_03780 0.37 -0.5
21,907 + MPMX19_03780 0.45 -0.4
21,907 + MPMX19_03780 0.45 +0.3
21,907 + MPMX19_03780 0.45 +0.2
21,907 + MPMX19_03780 0.45 +0.4
21,907 + MPMX19_03780 0.45 -1.4
21,907 + MPMX19_03780 0.45 -0.2
21,907 + MPMX19_03780 0.45 -1.3
21,907 + MPMX19_03780 0.45 -1.0
21,907 + MPMX19_03780 0.45 -0.3
21,907 + MPMX19_03780 0.45 -0.3
21,907 + MPMX19_03780 0.45 +0.4
21,907 + MPMX19_03780 0.45 +0.5
21,908 - MPMX19_03780 0.45 -2.5
21,908 - MPMX19_03780 0.45 -0.4
21,908 - MPMX19_03780 0.45 -1.2
21,908 - MPMX19_03780 0.45 -1.6
21,908 - MPMX19_03780 0.45 -2.9
21,908 - MPMX19_03780 0.45 -1.2
21,908 - MPMX19_03780 0.45 -0.6
21,908 - MPMX19_03780 0.45 -0.4
21,908 - MPMX19_03780 0.45 -1.2
21,908 - MPMX19_03780 0.45 -0.2
21,908 - MPMX19_03780 0.45 -0.9
22,066 + MPMX19_03780 0.62 +0.8
22,066 + MPMX19_03780 0.62 -0.7
22,066 + MPMX19_03780 0.62 -2.1
22,066 + MPMX19_03780 0.62 -0.1
22,066 + MPMX19_03780 0.62 -0.1
22,066 + MPMX19_03780 0.62 +0.6
22,066 + MPMX19_03780 0.62 -0.2
22,066 + MPMX19_03780 0.62 -1.7
22,066 + MPMX19_03780 0.62 +0.1
22,067 - MPMX19_03780 0.62 -0.2
22,067 - MPMX19_03780 0.62 -1.2
22,067 - MPMX19_03780 0.62 -0.0
22,067 - MPMX19_03780 0.62 +0.3
22,067 - MPMX19_03780 0.62 -1.6
22,067 - MPMX19_03780 0.62 -2.2
22,067 - MPMX19_03780 0.62 +0.3
22,067 - MPMX19_03780 0.62 -0.9
22,067 - MPMX19_03780 0.62 -0.6
22,067 - MPMX19_03780 0.62 -2.0
22,067 - MPMX19_03780 0.62 -1.2
22,067 - MPMX19_03780 0.62 -1.4
22,345 + +1.4
22,345 + -0.9
22,345 + -0.2
22,345 + -1.0
22,345 + -0.3
22,345 + -1.3
22,345 + -0.7
22,345 + +0.3
22,346 - -1.6
22,346 - -0.7
22,346 - +0.6
22,346 - +0.6
22,346 - -1.8
22,346 - -0.7
22,357 + -0.6
22,381 + -1.3
22,381 + -1.4
22,381 + -0.9
22,381 + -0.6
22,381 + -0.0
22,381 + -1.2
22,381 + -0.0
22,381 + -0.7
22,381 + -1.5
22,381 + -0.8
22,381 + +0.1
22,382 - -0.5
22,382 - -0.7
22,382 - -0.8
22,382 - -1.8
22,382 - -1.0
22,382 - -0.3
22,382 - -1.5
22,382 - -1.7
22,382 - -0.4
22,382 - -1.5
22,382 - -1.7
22,382 - +0.6
22,382 - -0.4
22,382 - -1.2
22,382 - -0.7
22,382 - -1.7
22,382 - -0.0
22,382 - -0.9
22,382 - -0.3
22,382 - -0.4
22,404 - -0.6
22,404 - -0.1
22,404 - -0.2
22,464 + MPMX19_03781 0.11 -1.2
22,464 + MPMX19_03781 0.11 +0.6
22,464 + MPMX19_03781 0.11 -2.1
22,464 + MPMX19_03781 0.11 -1.0
22,465 - MPMX19_03781 0.11 -0.2
22,465 - MPMX19_03781 0.11 +0.4
22,465 - MPMX19_03781 0.11 -1.7
22,465 - MPMX19_03781 0.11 -1.7
22,465 - MPMX19_03781 0.11 -0.7
22,465 - MPMX19_03781 0.11 +0.1
22,465 - MPMX19_03781 0.11 -0.2
22,465 - MPMX19_03781 0.11 -1.5
22,465 - MPMX19_03781 0.11 -0.6
22,465 - MPMX19_03781 0.11 -0.6
22,465 - MPMX19_03781 0.11 -0.1
22,465 - MPMX19_03781 0.11 +0.1
22,465 - MPMX19_03781 0.11 -3.2
22,465 - MPMX19_03781 0.11 +1.3
22,465 - MPMX19_03781 0.11 -0.7
22,465 - MPMX19_03781 0.11 -3.2
22,468 + MPMX19_03781 0.12 -0.3
22,468 + MPMX19_03781 0.12 -0.9
22,468 + MPMX19_03781 0.12 -0.3
22,468 + MPMX19_03781 0.12 -0.2
22,468 + MPMX19_03781 0.12 -1.5
22,468 + MPMX19_03781 0.12 -1.2
22,468 + MPMX19_03781 0.12 +0.1
22,468 + MPMX19_03781 0.12 -1.2
22,468 + MPMX19_03781 0.12 -0.2
22,468 + MPMX19_03781 0.12 -0.4
22,469 - MPMX19_03781 0.12 -1.3
22,469 - MPMX19_03781 0.12 +0.3
22,469 - MPMX19_03781 0.12 -1.0
22,469 - MPMX19_03781 0.12 -0.2
22,469 - MPMX19_03781 0.12 -0.8
22,469 - MPMX19_03781 0.12 -0.2
22,469 - MPMX19_03781 0.12 -1.8
22,469 - MPMX19_03781 0.12 -0.3
22,469 - MPMX19_03781 0.12 -0.2
22,469 - MPMX19_03781 0.12 -2.2
22,469 - MPMX19_03781 0.12 -1.0
22,469 - MPMX19_03781 0.12 -0.6

Or see this region's nucleotide sequence