Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03726

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03725 and MPMX19_03726 are separated by 261 nucleotidesMPMX19_03726 and MPMX19_03727 are separated by 7 nucleotides MPMX19_03725: MPMX19_03725 - Hercynine oxygenase, at 1,168,131 to 1,170,932 _03725 MPMX19_03726: MPMX19_03726 - hypothetical protein, at 1,171,194 to 1,173,113 _03726 MPMX19_03727: MPMX19_03727 - hypothetical protein, at 1,173,121 to 1,174,239 _03727 Position (kb) 1171 1172 1173 1174Strain fitness (log2 ratio) -2 -1 0 1 2at 1170.248 kb on + strand, within MPMX19_03725at 1170.248 kb on + strand, within MPMX19_03725at 1170.248 kb on + strand, within MPMX19_03725at 1170.249 kb on - strand, within MPMX19_03725at 1170.249 kb on - strand, within MPMX19_03725at 1170.484 kb on + strand, within MPMX19_03725at 1170.484 kb on + strand, within MPMX19_03725at 1170.484 kb on + strand, within MPMX19_03725at 1170.484 kb on + strand, within MPMX19_03725at 1170.484 kb on + strand, within MPMX19_03725at 1170.485 kb on - strand, within MPMX19_03725at 1170.485 kb on - strand, within MPMX19_03725at 1170.485 kb on - strand, within MPMX19_03725at 1170.485 kb on - strand, within MPMX19_03725at 1170.485 kb on - strand, within MPMX19_03725at 1170.532 kb on + strand, within MPMX19_03725at 1170.532 kb on + strand, within MPMX19_03725at 1170.532 kb on + strand, within MPMX19_03725at 1170.532 kb on + strand, within MPMX19_03725at 1170.532 kb on + strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.533 kb on - strand, within MPMX19_03725at 1170.568 kb on + strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.569 kb on - strand, within MPMX19_03725at 1170.652 kb on + strandat 1170.652 kb on + strandat 1170.652 kb on + strandat 1170.653 kb on - strandat 1170.746 kb on - strandat 1170.993 kb on + strandat 1170.993 kb on + strandat 1170.993 kb on + strandat 1170.993 kb on + strandat 1170.994 kb on - strandat 1170.994 kb on - strandat 1170.994 kb on - strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.086 kb on + strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.087 kb on - strandat 1171.164 kb on - strandat 1171.164 kb on - strandat 1171.182 kb on + strandat 1171.182 kb on + strandat 1171.183 kb on - strandat 1171.405 kb on + strand, within MPMX19_03726at 1171.405 kb on + strand, within MPMX19_03726at 1171.406 kb on - strand, within MPMX19_03726at 1171.406 kb on - strand, within MPMX19_03726at 1171.406 kb on - strand, within MPMX19_03726at 1171.406 kb on - strand, within MPMX19_03726at 1171.453 kb on + strand, within MPMX19_03726at 1171.454 kb on - strand, within MPMX19_03726at 1171.454 kb on - strand, within MPMX19_03726at 1171.741 kb on + strand, within MPMX19_03726at 1171.741 kb on + strand, within MPMX19_03726at 1171.741 kb on + strand, within MPMX19_03726at 1171.741 kb on + strand, within MPMX19_03726at 1171.742 kb on - strand, within MPMX19_03726at 1171.742 kb on - strand, within MPMX19_03726at 1171.742 kb on - strand, within MPMX19_03726at 1171.742 kb on - strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.383 kb on + strand, within MPMX19_03726at 1172.384 kb on - strand, within MPMX19_03726at 1172.384 kb on - strand, within MPMX19_03726at 1172.853 kb on + strand, within MPMX19_03726at 1172.853 kb on + strand, within MPMX19_03726at 1172.853 kb on + strand, within MPMX19_03726at 1172.853 kb on + strand, within MPMX19_03726at 1172.854 kb on - strand, within MPMX19_03726at 1173.428 kb on + strand, within MPMX19_03727at 1173.428 kb on + strand, within MPMX19_03727at 1173.428 kb on + strand, within MPMX19_03727at 1173.428 kb on + strand, within MPMX19_03727at 1173.429 kb on - strand, within MPMX19_03727at 1173.434 kb on + strand, within MPMX19_03727at 1173.434 kb on + strand, within MPMX19_03727at 1173.435 kb on - strand, within MPMX19_03727at 1173.435 kb on - strand, within MPMX19_03727at 1173.601 kb on + strand, within MPMX19_03727at 1173.601 kb on + strand, within MPMX19_03727at 1173.601 kb on + strand, within MPMX19_03727at 1173.601 kb on + strand, within MPMX19_03727at 1173.601 kb on + strand, within MPMX19_03727at 1173.602 kb on - strand, within MPMX19_03727at 1173.602 kb on - strand, within MPMX19_03727at 1173.602 kb on - strand, within MPMX19_03727at 1173.924 kb on + strand, within MPMX19_03727at 1173.924 kb on + strand, within MPMX19_03727at 1173.925 kb on - strand, within MPMX19_03727at 1173.925 kb on - strand, within MPMX19_03727at 1173.925 kb on - strand, within MPMX19_03727at 1173.925 kb on - strand, within MPMX19_03727at 1174.023 kb on - strand, within MPMX19_03727at 1174.023 kb on - strand, within MPMX19_03727at 1174.023 kb on - strand, within MPMX19_03727

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,170,248 + MPMX19_03725 0.76 -0.6
1,170,248 + MPMX19_03725 0.76 -0.2
1,170,248 + MPMX19_03725 0.76 -1.1
1,170,249 - MPMX19_03725 0.76 -1.1
1,170,249 - MPMX19_03725 0.76 -0.4
1,170,484 + MPMX19_03725 0.84 -1.7
1,170,484 + MPMX19_03725 0.84 +0.4
1,170,484 + MPMX19_03725 0.84 -0.4
1,170,484 + MPMX19_03725 0.84 -0.8
1,170,484 + MPMX19_03725 0.84 +0.1
1,170,485 - MPMX19_03725 0.84 -1.8
1,170,485 - MPMX19_03725 0.84 -2.2
1,170,485 - MPMX19_03725 0.84 +0.2
1,170,485 - MPMX19_03725 0.84 +0.2
1,170,485 - MPMX19_03725 0.84 -0.7
1,170,532 + MPMX19_03725 0.86 -1.5
1,170,532 + MPMX19_03725 0.86 -0.2
1,170,532 + MPMX19_03725 0.86 -1.1
1,170,532 + MPMX19_03725 0.86 +0.4
1,170,532 + MPMX19_03725 0.86 -0.8
1,170,533 - MPMX19_03725 0.86 -0.2
1,170,533 - MPMX19_03725 0.86 -1.1
1,170,533 - MPMX19_03725 0.86 -1.4
1,170,533 - MPMX19_03725 0.86 -1.7
1,170,533 - MPMX19_03725 0.86 +1.4
1,170,533 - MPMX19_03725 0.86 -1.3
1,170,533 - MPMX19_03725 0.86 +0.4
1,170,568 + MPMX19_03725 0.87 -0.1
1,170,569 - MPMX19_03725 0.87 +0.1
1,170,569 - MPMX19_03725 0.87 -0.9
1,170,569 - MPMX19_03725 0.87 -0.8
1,170,569 - MPMX19_03725 0.87 -0.0
1,170,569 - MPMX19_03725 0.87 -1.2
1,170,569 - MPMX19_03725 0.87 -0.9
1,170,652 + -1.2
1,170,652 + -1.4
1,170,652 + -1.0
1,170,653 - +0.4
1,170,746 - +0.1
1,170,993 + +0.8
1,170,993 + -1.0
1,170,993 + +0.3
1,170,993 + -0.6
1,170,994 - -2.6
1,170,994 - +1.1
1,170,994 - +1.1
1,171,086 + -0.6
1,171,086 + -0.3
1,171,086 + +0.1
1,171,086 + -2.2
1,171,086 + +0.1
1,171,086 + -0.4
1,171,086 + +0.1
1,171,087 - -0.3
1,171,087 - -1.5
1,171,087 - -0.3
1,171,087 - -0.8
1,171,087 - -1.3
1,171,087 - -0.4
1,171,087 - +0.9
1,171,087 - -0.6
1,171,087 - -0.4
1,171,164 - -1.5
1,171,164 - +0.1
1,171,182 + -0.1
1,171,182 + -0.4
1,171,183 - -2.1
1,171,405 + MPMX19_03726 0.11 +0.1
1,171,405 + MPMX19_03726 0.11 -0.2
1,171,406 - MPMX19_03726 0.11 +0.8
1,171,406 - MPMX19_03726 0.11 +0.2
1,171,406 - MPMX19_03726 0.11 -0.1
1,171,406 - MPMX19_03726 0.11 -0.2
1,171,453 + MPMX19_03726 0.13 -0.6
1,171,454 - MPMX19_03726 0.14 +1.1
1,171,454 - MPMX19_03726 0.14 +2.4
1,171,741 + MPMX19_03726 0.28 -0.7
1,171,741 + MPMX19_03726 0.28 -0.2
1,171,741 + MPMX19_03726 0.28 -0.2
1,171,741 + MPMX19_03726 0.28 -0.6
1,171,742 - MPMX19_03726 0.29 -1.8
1,171,742 - MPMX19_03726 0.29 -0.2
1,171,742 - MPMX19_03726 0.29 -1.3
1,171,742 - MPMX19_03726 0.29 -1.1
1,172,383 + MPMX19_03726 0.62 -1.6
1,172,383 + MPMX19_03726 0.62 -0.2
1,172,383 + MPMX19_03726 0.62 +1.0
1,172,383 + MPMX19_03726 0.62 -1.2
1,172,383 + MPMX19_03726 0.62 -0.4
1,172,383 + MPMX19_03726 0.62 +0.3
1,172,384 - MPMX19_03726 0.62 -0.4
1,172,384 - MPMX19_03726 0.62 -0.4
1,172,853 + MPMX19_03726 0.86 +0.6
1,172,853 + MPMX19_03726 0.86 +0.4
1,172,853 + MPMX19_03726 0.86 -0.9
1,172,853 + MPMX19_03726 0.86 -0.6
1,172,854 - MPMX19_03726 0.86 -0.2
1,173,428 + MPMX19_03727 0.27 -1.1
1,173,428 + MPMX19_03727 0.27 +1.2
1,173,428 + MPMX19_03727 0.27 -0.4
1,173,428 + MPMX19_03727 0.27 -1.4
1,173,429 - MPMX19_03727 0.28 -0.3
1,173,434 + MPMX19_03727 0.28 +0.8
1,173,434 + MPMX19_03727 0.28 -0.7
1,173,435 - MPMX19_03727 0.28 -1.5
1,173,435 - MPMX19_03727 0.28 -0.2
1,173,601 + MPMX19_03727 0.43 +1.4
1,173,601 + MPMX19_03727 0.43 +0.6
1,173,601 + MPMX19_03727 0.43 -1.1
1,173,601 + MPMX19_03727 0.43 +0.6
1,173,601 + MPMX19_03727 0.43 -0.5
1,173,602 - MPMX19_03727 0.43 -0.8
1,173,602 - MPMX19_03727 0.43 -0.6
1,173,602 - MPMX19_03727 0.43 -0.8
1,173,924 + MPMX19_03727 0.72 -1.0
1,173,924 + MPMX19_03727 0.72 -0.8
1,173,925 - MPMX19_03727 0.72 -1.5
1,173,925 - MPMX19_03727 0.72 -0.2
1,173,925 - MPMX19_03727 0.72 -0.9
1,173,925 - MPMX19_03727 0.72 -1.2
1,174,023 - MPMX19_03727 0.81 -2.0
1,174,023 - MPMX19_03727 0.81 +0.4
1,174,023 - MPMX19_03727 0.81 -0.2

Or see this region's nucleotide sequence