Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03620

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03619 and MPMX19_03620 are separated by 378 nucleotidesMPMX19_03620 and MPMX19_03621 overlap by 23 nucleotides MPMX19_03619: MPMX19_03619 - hypothetical protein, at 1,050,961 to 1,052,385 _03619 MPMX19_03620: MPMX19_03620 - hypothetical protein, at 1,052,764 to 1,054,866 _03620 MPMX19_03621: MPMX19_03621 - N-acetylglucosamine repressor, at 1,054,844 to 1,056,073 _03621 Position (kb) 1052 1053 1054 1055Strain fitness (log2 ratio) -3 -2 -1 0 1at 1052.072 kb on - strand, within MPMX19_03619at 1052.083 kb on + strand, within MPMX19_03619at 1052.084 kb on - strand, within MPMX19_03619at 1052.084 kb on - strand, within MPMX19_03619at 1052.084 kb on - strand, within MPMX19_03619at 1052.084 kb on - strand, within MPMX19_03619at 1052.096 kb on - strand, within MPMX19_03619at 1052.413 kb on + strandat 1052.414 kb on - strandat 1052.433 kb on - strandat 1052.437 kb on - strandat 1052.437 kb on - strandat 1052.441 kb on - strandat 1052.445 kb on + strandat 1052.638 kb on + strandat 1053.244 kb on + strand, within MPMX19_03620at 1053.245 kb on - strand, within MPMX19_03620at 1053.245 kb on - strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.664 kb on + strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1053.665 kb on - strand, within MPMX19_03620at 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.959 kb on + strandat 1054.960 kb on - strandat 1054.960 kb on - strandat 1054.960 kb on - strandat 1054.960 kb on - strandat 1054.960 kb on - strandat 1055.005 kb on - strand, within MPMX19_03621at 1055.120 kb on - strand, within MPMX19_03621at 1055.356 kb on + strand, within MPMX19_03621at 1055.356 kb on + strand, within MPMX19_03621at 1055.356 kb on + strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.394 kb on + strand, within MPMX19_03621at 1055.395 kb on - strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.565 kb on + strand, within MPMX19_03621

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,052,072 - MPMX19_03619 0.78 -1.6
1,052,083 + MPMX19_03619 0.79 -0.6
1,052,084 - MPMX19_03619 0.79 +0.6
1,052,084 - MPMX19_03619 0.79 -0.1
1,052,084 - MPMX19_03619 0.79 -0.4
1,052,084 - MPMX19_03619 0.79 -0.3
1,052,096 - MPMX19_03619 0.80 +0.4
1,052,413 + -0.2
1,052,414 - -0.8
1,052,433 - -1.5
1,052,437 - +0.9
1,052,437 - +1.4
1,052,441 - -0.1
1,052,445 + -0.2
1,052,638 + -1.0
1,053,244 + MPMX19_03620 0.23 -0.4
1,053,245 - MPMX19_03620 0.23 -2.1
1,053,245 - MPMX19_03620 0.23 -0.8
1,053,664 + MPMX19_03620 0.43 -1.3
1,053,664 + MPMX19_03620 0.43 +0.2
1,053,664 + MPMX19_03620 0.43 -2.0
1,053,664 + MPMX19_03620 0.43 +0.1
1,053,664 + MPMX19_03620 0.43 -0.8
1,053,664 + MPMX19_03620 0.43 -1.2
1,053,664 + MPMX19_03620 0.43 -1.2
1,053,665 - MPMX19_03620 0.43 +0.4
1,053,665 - MPMX19_03620 0.43 -1.9
1,053,665 - MPMX19_03620 0.43 +0.4
1,053,665 - MPMX19_03620 0.43 -0.1
1,053,665 - MPMX19_03620 0.43 -1.4
1,053,665 - MPMX19_03620 0.43 -1.2
1,053,665 - MPMX19_03620 0.43 +1.1
1,054,959 + +0.1
1,054,959 + -0.7
1,054,959 + +0.2
1,054,959 + -0.1
1,054,959 + -0.7
1,054,959 + -0.2
1,054,959 + -0.8
1,054,959 + -0.1
1,054,959 + -0.5
1,054,959 + -0.9
1,054,960 - -0.5
1,054,960 - -0.8
1,054,960 - -0.2
1,054,960 - -0.2
1,054,960 - -1.4
1,055,005 - MPMX19_03621 0.13 -0.4
1,055,120 - MPMX19_03621 0.22 -0.3
1,055,356 + MPMX19_03621 0.42 +0.2
1,055,356 + MPMX19_03621 0.42 -1.5
1,055,356 + MPMX19_03621 0.42 +0.6
1,055,357 - MPMX19_03621 0.42 -1.3
1,055,357 - MPMX19_03621 0.42 -0.4
1,055,357 - MPMX19_03621 0.42 -0.6
1,055,357 - MPMX19_03621 0.42 -0.0
1,055,357 - MPMX19_03621 0.42 -0.7
1,055,357 - MPMX19_03621 0.42 -0.4
1,055,357 - MPMX19_03621 0.42 -0.8
1,055,357 - MPMX19_03621 0.42 -0.6
1,055,357 - MPMX19_03621 0.42 +0.1
1,055,357 - MPMX19_03621 0.42 +1.7
1,055,394 + MPMX19_03621 0.45 -2.8
1,055,395 - MPMX19_03621 0.45 +0.9
1,055,538 + MPMX19_03621 0.56 -1.6
1,055,538 + MPMX19_03621 0.56 -0.1
1,055,538 + MPMX19_03621 0.56 +0.4
1,055,538 + MPMX19_03621 0.56 -1.1
1,055,538 + MPMX19_03621 0.56 -0.1
1,055,538 + MPMX19_03621 0.56 +0.4
1,055,539 - MPMX19_03621 0.57 +0.3
1,055,539 - MPMX19_03621 0.57 -0.3
1,055,539 - MPMX19_03621 0.57 +0.2
1,055,539 - MPMX19_03621 0.57 -1.2
1,055,539 - MPMX19_03621 0.57 -2.2
1,055,539 - MPMX19_03621 0.57 -0.6
1,055,539 - MPMX19_03621 0.57 -0.9
1,055,565 + MPMX19_03621 0.59 -0.2

Or see this region's nucleotide sequence