Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides MPMX19_03537 and MPMX19_03538 are separated by 69 nucleotides MPMX19_03538 and MPMX19_03539 are separated by 104 nucleotides
MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513
_03535
MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261
_03536
MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962
_03537
MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781
_03538
MPMX19_03539: MPMX19_03539 - Acetylornithine deacetylase, at 957,886 to 959,259
_03539
Position (kb) 956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.379 kb on + strand, within MPMX19_03535 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.236 kb on - strand at 956.291 kb on + strand at 956.292 kb on - strand at 956.400 kb on + strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.949 kb on - strand at 956.949 kb on - strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.255 kb on + strand, within MPMX19_03538 at 957.255 kb on + strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.498 kb on + strand, within MPMX19_03538 at 957.499 kb on - strand, within MPMX19_03538 at 957.499 kb on - strand, within MPMX19_03538 at 957.501 kb on + strand, within MPMX19_03538 at 957.501 kb on + strand, within MPMX19_03538 at 957.502 kb on - strand, within MPMX19_03538 at 957.860 kb on - strand at 957.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 955,379 + MPMX19_03535 0.86 +1.4 955,912 + MPMX19_03536 0.54 -0.9 955,912 + MPMX19_03536 0.54 -0.9 955,912 + MPMX19_03536 0.54 +0.2 955,912 + MPMX19_03536 0.54 -0.6 955,912 + MPMX19_03536 0.54 -0.6 955,913 - MPMX19_03536 0.54 -0.4 955,913 - MPMX19_03536 0.54 -0.6 955,913 - MPMX19_03536 0.54 -0.4 956,169 + MPMX19_03536 0.88 +0.1 956,169 + MPMX19_03536 0.88 -1.0 956,169 + MPMX19_03536 0.88 -1.6 956,169 + MPMX19_03536 0.88 -0.1 956,170 - MPMX19_03536 0.88 +2.4 956,170 - MPMX19_03536 0.88 -0.6 956,170 - MPMX19_03536 0.88 -1.1 956,235 + +0.1 956,235 + -0.0 956,235 + -1.3 956,235 + -1.7 956,236 - -0.2 956,291 + -0.4 956,292 - -0.8 956,400 + MPMX19_03537 0.20 +0.7 956,401 - MPMX19_03537 0.20 +0.4 956,401 - MPMX19_03537 0.20 -0.4 956,401 - MPMX19_03537 0.20 -1.9 956,948 + -0.6 956,948 + -0.7 956,948 + -0.2 956,948 + +0.1 956,948 + -0.2 956,948 + +0.8 956,948 + -1.2 956,948 + -0.5 956,949 - -0.9 956,949 - +0.8 957,051 + +0.6 957,051 + +0.1 957,051 + -0.2 957,051 + -1.1 957,051 + +1.6 957,051 + -0.4 957,051 + +0.5 957,051 + -1.8 957,051 + -1.1 957,051 + +0.4 957,051 + -0.4 957,051 + -0.2 957,051 + -0.7 957,052 - -1.4 957,052 - +0.3 957,052 - -0.8 957,052 - -0.7 957,052 - -1.9 957,052 - -0.4 957,052 - -0.3 957,052 - -1.1 957,052 - -0.2 957,052 - +1.3 957,052 - -1.8 957,052 - -1.4 957,052 - -0.6 957,052 - -0.1 957,052 - +1.4 957,052 - -0.5 957,052 - -1.2 957,255 + MPMX19_03538 0.30 -1.8 957,255 + MPMX19_03538 0.30 -1.3 957,256 - MPMX19_03538 0.30 -0.4 957,256 - MPMX19_03538 0.30 -1.7 957,256 - MPMX19_03538 0.30 -1.5 957,498 + MPMX19_03538 0.62 -0.5 957,499 - MPMX19_03538 0.62 +1.7 957,499 - MPMX19_03538 0.62 -0.5 957,501 + MPMX19_03538 0.63 -0.7 957,501 + MPMX19_03538 0.63 -0.8 957,502 - MPMX19_03538 0.63 -2.2 957,860 - -0.3 957,936 + -0.1
Or see this region's nucleotide sequence