Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03238

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03236 and MPMX19_03237 overlap by 4 nucleotidesMPMX19_03237 and MPMX19_03238 are separated by 15 nucleotidesMPMX19_03238 and MPMX19_03239 are separated by 130 nucleotides MPMX19_03236: MPMX19_03236 - Protein MbtH, at 539,221 to 539,436 _03236 MPMX19_03237: MPMX19_03237 - Linear gramicidin dehydrogenase LgrE, at 539,433 to 540,182 _03237 MPMX19_03238: MPMX19_03238 - hypothetical protein, at 540,198 to 541,208 _03238 MPMX19_03239: MPMX19_03239 - D-alanine--D-alanyl carrier protein ligase, at 541,339 to 548,112 _03239 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.362 kb on + strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.502 kb on + strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.962 kb on - strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 540.059 kb on - strand, within MPMX19_03237at 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.418 kb on + strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238at 540.468 kb on + strand, within MPMX19_03238at 540.468 kb on + strand, within MPMX19_03238at 540.469 kb on - strand, within MPMX19_03238at 540.513 kb on + strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.529 kb on - strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 541.008 kb on + strand, within MPMX19_03238at 541.008 kb on + strand, within MPMX19_03238at 541.009 kb on - strand, within MPMX19_03238at 541.519 kb on + strandat 541.519 kb on + strandat 541.519 kb on + strandat 541.520 kb on - strandat 541.520 kb on - strandat 541.520 kb on - strandat 541.520 kb on - strandat 541.621 kb on + strandat 541.648 kb on + strandat 541.649 kb on - strandat 541.649 kb on - strandat 541.649 kb on - strandat 541.649 kb on - strandat 541.675 kb on + strandat 541.771 kb on + strandat 541.771 kb on + strandat 541.772 kb on - strandat 541.772 kb on - strandat 541.772 kb on - strandat 541.772 kb on - strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.915 kb on + strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 541.916 kb on - strandat 542.125 kb on + strand, within MPMX19_03239at 542.170 kb on + strand, within MPMX19_03239

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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539,278 + MPMX19_03236 0.26 -0.2
539,278 + MPMX19_03236 0.26 +0.6
539,278 + MPMX19_03236 0.26 +0.1
539,278 + MPMX19_03236 0.26 -0.9
539,278 + MPMX19_03236 0.26 -0.1
539,278 + MPMX19_03236 0.26 -0.3
539,278 + MPMX19_03236 0.26 +1.4
539,279 - MPMX19_03236 0.27 +1.1
539,279 - MPMX19_03236 0.27 +0.8
539,279 - MPMX19_03236 0.27 +0.5
539,279 - MPMX19_03236 0.27 +0.3
539,296 + MPMX19_03236 0.35 -2.2
539,296 + MPMX19_03236 0.35 +0.4
539,296 + MPMX19_03236 0.35 +1.4
539,296 + MPMX19_03236 0.35 -0.8
539,296 + MPMX19_03236 0.35 -0.4
539,296 + MPMX19_03236 0.35 +0.1
539,296 + MPMX19_03236 0.35 -2.6
539,296 + MPMX19_03236 0.35 -0.1
539,297 - MPMX19_03236 0.35 -0.5
539,297 - MPMX19_03236 0.35 +0.1
539,297 - MPMX19_03236 0.35 +0.1
539,297 - MPMX19_03236 0.35 -0.6
539,297 - MPMX19_03236 0.35 -0.3
539,297 - MPMX19_03236 0.35 +0.5
539,297 - MPMX19_03236 0.35 -1.3
539,362 + MPMX19_03236 0.65 -1.2
539,363 - MPMX19_03236 0.66 -1.5
539,363 - MPMX19_03236 0.66 +0.1
539,502 + +0.1
539,503 - +0.8
539,503 - -1.1
539,503 - -1.2
539,526 + MPMX19_03237 0.12 -0.4
539,526 + MPMX19_03237 0.12 -0.4
539,526 + MPMX19_03237 0.12 -1.7
539,526 + MPMX19_03237 0.12 +0.7
539,526 + MPMX19_03237 0.12 -0.8
539,526 + MPMX19_03237 0.12 -0.6
539,526 + MPMX19_03237 0.12 -1.8
539,526 + MPMX19_03237 0.12 -0.7
539,526 + MPMX19_03237 0.12 -0.9
539,526 + MPMX19_03237 0.12 -1.2
539,527 - MPMX19_03237 0.13 +0.4
539,527 - MPMX19_03237 0.13 -0.4
539,527 - MPMX19_03237 0.13 +0.2
539,527 - MPMX19_03237 0.13 +0.1
539,527 - MPMX19_03237 0.13 -0.6
539,527 - MPMX19_03237 0.13 +0.4
539,962 - MPMX19_03237 0.71 +0.1
539,967 + MPMX19_03237 0.71 +1.0
539,967 + MPMX19_03237 0.71 +0.4
540,059 - MPMX19_03237 0.83 -0.4
540,209 + +0.1
540,209 + -0.0
540,209 + -1.1
540,209 + +0.4
540,209 + +0.1
540,210 - -0.0
540,210 - -0.7
540,210 - +0.1
540,210 - -1.9
540,210 - -0.2
540,210 - -0.4
540,210 - -0.9
540,210 - -0.8
540,210 - +0.6
540,418 + MPMX19_03238 0.22 +0.8
540,419 - MPMX19_03238 0.22 +0.3
540,419 - MPMX19_03238 0.22 -1.4
540,468 + MPMX19_03238 0.27 +0.1
540,468 + MPMX19_03238 0.27 +0.4
540,469 - MPMX19_03238 0.27 -0.1
540,513 + MPMX19_03238 0.31 -1.2
540,514 - MPMX19_03238 0.31 +1.0
540,514 - MPMX19_03238 0.31 +0.1
540,514 - MPMX19_03238 0.31 -0.4
540,514 - MPMX19_03238 0.31 +1.1
540,529 - MPMX19_03238 0.33 -0.2
540,570 + MPMX19_03238 0.37 -0.5
540,570 + MPMX19_03238 0.37 +0.4
540,570 + MPMX19_03238 0.37 -0.8
540,570 + MPMX19_03238 0.37 -1.7
540,570 + MPMX19_03238 0.37 -1.1
540,571 - MPMX19_03238 0.37 -1.6
540,571 - MPMX19_03238 0.37 -0.6
540,571 - MPMX19_03238 0.37 -0.8
540,717 + MPMX19_03238 0.51 -0.2
540,717 + MPMX19_03238 0.51 -2.2
540,717 + MPMX19_03238 0.51 +0.8
540,717 + MPMX19_03238 0.51 -0.8
540,717 + MPMX19_03238 0.51 -2.2
540,717 + MPMX19_03238 0.51 -0.3
540,717 + MPMX19_03238 0.51 -0.4
540,717 + MPMX19_03238 0.51 -2.4
540,717 + MPMX19_03238 0.51 -0.8
540,717 + MPMX19_03238 0.51 -0.4
540,717 + MPMX19_03238 0.51 -1.0
540,717 + MPMX19_03238 0.51 -1.6
540,717 + MPMX19_03238 0.51 -1.1
540,717 + MPMX19_03238 0.51 -2.4
540,717 + MPMX19_03238 0.51 -1.2
540,717 + MPMX19_03238 0.51 +0.8
540,717 + MPMX19_03238 0.51 -1.6
540,717 + MPMX19_03238 0.51 -0.2
540,717 + MPMX19_03238 0.51 +0.1
540,717 + MPMX19_03238 0.51 +1.9
540,717 + MPMX19_03238 0.51 +0.4
540,717 + MPMX19_03238 0.51 -2.1
540,717 + MPMX19_03238 0.51 +0.1
540,717 + MPMX19_03238 0.51 -1.5
540,717 + MPMX19_03238 0.51 -1.9
540,718 - MPMX19_03238 0.51 -1.2
540,718 - MPMX19_03238 0.51 -2.1
540,718 - MPMX19_03238 0.51 -0.9
540,718 - MPMX19_03238 0.51 +0.4
540,718 - MPMX19_03238 0.51 -0.4
540,718 - MPMX19_03238 0.51 -1.2
540,718 - MPMX19_03238 0.51 -1.5
540,718 - MPMX19_03238 0.51 -1.6
540,718 - MPMX19_03238 0.51 +0.2
540,718 - MPMX19_03238 0.51 -0.4
540,718 - MPMX19_03238 0.51 -1.2
540,718 - MPMX19_03238 0.51 -1.6
540,718 - MPMX19_03238 0.51 -2.7
540,718 - MPMX19_03238 0.51 -1.1
540,718 - MPMX19_03238 0.51 +1.0
540,718 - MPMX19_03238 0.51 +0.7
540,718 - MPMX19_03238 0.51 -0.2
540,718 - MPMX19_03238 0.51 -1.4
540,718 - MPMX19_03238 0.51 -1.2
540,718 - MPMX19_03238 0.51 -1.3
540,718 - MPMX19_03238 0.51 +0.1
540,729 + MPMX19_03238 0.53 -0.0
540,729 + MPMX19_03238 0.53 +1.0
540,729 + MPMX19_03238 0.53 +1.0
540,798 + MPMX19_03238 0.59 +1.8
540,798 + MPMX19_03238 0.59 -0.4
540,798 + MPMX19_03238 0.59 -1.6
540,798 + MPMX19_03238 0.59 +1.2
540,798 + MPMX19_03238 0.59 -2.0
540,799 - MPMX19_03238 0.59 -0.5
540,799 - MPMX19_03238 0.59 -0.8
540,799 - MPMX19_03238 0.59 -0.9
540,799 - MPMX19_03238 0.59 -1.2
540,799 - MPMX19_03238 0.59 -0.9
540,799 - MPMX19_03238 0.59 -1.3
541,008 + MPMX19_03238 0.80 -0.2
541,008 + MPMX19_03238 0.80 +0.7
541,009 - MPMX19_03238 0.80 -0.2
541,519 + -0.3
541,519 + +0.1
541,519 + -0.5
541,520 - -1.5
541,520 - +0.2
541,520 - -0.8
541,520 - -1.2
541,621 + -0.4
541,648 + -1.3
541,649 - +0.7
541,649 - -0.2
541,649 - +0.5
541,649 - +0.4
541,675 + -0.3
541,771 + +0.1
541,771 + -1.8
541,772 - +0.2
541,772 - +0.1
541,772 - +0.1
541,772 - -2.2
541,915 + +0.8
541,915 + +1.2
541,915 + -0.3
541,915 + -0.2
541,915 + -0.4
541,915 + -0.9
541,915 + -0.8
541,915 + -0.7
541,915 + -0.0
541,915 + -0.6
541,915 + -0.5
541,915 + -1.7
541,915 + -0.4
541,916 - -1.2
541,916 - -2.1
541,916 - -2.6
541,916 - -0.8
541,916 - -1.8
541,916 - -0.2
541,916 - +0.8
541,916 - -1.1
541,916 - -0.6
541,916 - -1.1
542,125 + MPMX19_03239 0.12 -0.5
542,170 + MPMX19_03239 0.12 +0.4

Or see this region's nucleotide sequence