Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02883

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02882 and MPMX19_02883 are separated by 13 nucleotidesMPMX19_02883 and MPMX19_02884 are separated by 1 nucleotides MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157 _02882 MPMX19_02883: MPMX19_02883 - hypothetical protein, at 133,171 to 133,500 _02883 MPMX19_02884: MPMX19_02884 - hypothetical protein, at 133,502 to 134,845 _02884 Position (kb) 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 132.200 kb on + strandat 132.227 kb on + strandat 132.227 kb on + strandat 132.228 kb on - strandat 132.228 kb on - strandat 132.250 kb on + strandat 132.250 kb on + strandat 132.251 kb on - strandat 132.251 kb on - strandat 132.251 kb on - strandat 132.266 kb on + strandat 132.266 kb on + strandat 132.267 kb on - strandat 132.267 kb on - strandat 132.267 kb on - strandat 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.360 kb on + strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.361 kb on - strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.517 kb on - strand, within MPMX19_02882at 132.553 kb on - strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.742 kb on - strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.776 kb on + strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 133.155 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.412 kb on + strand, within MPMX19_02883at 133.514 kb on - strandat 133.623 kb on + strandat 133.623 kb on + strandat 133.624 kb on - strandat 133.624 kb on - strandat 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.902 kb on + strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.206 kb on - strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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132,200 + +0.8
132,227 + -0.4
132,227 + -0.3
132,228 - -0.5
132,228 - -1.3
132,250 + -0.6
132,250 + -1.4
132,251 - +1.6
132,251 - -0.6
132,251 - -0.3
132,266 + +0.5
132,266 + +0.7
132,267 - -0.2
132,267 - +0.1
132,267 - -0.3
132,360 + MPMX19_02882 0.10 -1.1
132,360 + MPMX19_02882 0.10 -0.5
132,360 + MPMX19_02882 0.10 +0.1
132,360 + MPMX19_02882 0.10 -1.4
132,360 + MPMX19_02882 0.10 -1.1
132,360 + MPMX19_02882 0.10 +0.2
132,360 + MPMX19_02882 0.10 -1.2
132,361 - MPMX19_02882 0.11 -0.8
132,361 - MPMX19_02882 0.11 -1.0
132,361 - MPMX19_02882 0.11 +2.4
132,516 + MPMX19_02882 0.28 -1.1
132,516 + MPMX19_02882 0.28 -0.8
132,516 + MPMX19_02882 0.28 -0.2
132,516 + MPMX19_02882 0.28 -1.1
132,516 + MPMX19_02882 0.28 -0.8
132,517 - MPMX19_02882 0.28 -2.2
132,553 - MPMX19_02882 0.32 -1.9
132,741 + MPMX19_02882 0.53 -1.1
132,741 + MPMX19_02882 0.53 -2.1
132,741 + MPMX19_02882 0.53 -1.9
132,742 - MPMX19_02882 0.53 +2.1
132,774 + MPMX19_02882 0.57 -0.9
132,774 + MPMX19_02882 0.57 -1.0
132,774 + MPMX19_02882 0.57 -1.2
132,774 + MPMX19_02882 0.57 -0.6
132,774 + MPMX19_02882 0.57 -0.5
132,774 + MPMX19_02882 0.57 -0.9
132,774 + MPMX19_02882 0.57 +0.1
132,774 + MPMX19_02882 0.57 -1.0
132,774 + MPMX19_02882 0.57 -1.2
132,775 - MPMX19_02882 0.57 -0.6
132,775 - MPMX19_02882 0.57 -1.5
132,775 - MPMX19_02882 0.57 +0.3
132,775 - MPMX19_02882 0.57 +0.4
132,775 - MPMX19_02882 0.57 -0.1
132,775 - MPMX19_02882 0.57 -0.1
132,775 - MPMX19_02882 0.57 +0.4
132,775 - MPMX19_02882 0.57 -0.5
132,775 - MPMX19_02882 0.57 -0.2
132,775 - MPMX19_02882 0.57 -0.1
132,775 - MPMX19_02882 0.57 -0.4
132,776 + MPMX19_02882 0.57 -1.1
132,777 - MPMX19_02882 0.57 +0.8
132,777 - MPMX19_02882 0.57 -0.6
132,777 - MPMX19_02882 0.57 -2.1
132,777 - MPMX19_02882 0.57 +1.4
132,954 + MPMX19_02882 0.77 -1.1
132,954 + MPMX19_02882 0.77 +0.8
132,955 - MPMX19_02882 0.77 +0.8
132,955 - MPMX19_02882 0.77 -1.4
133,155 + -2.0
133,172 + +1.4
133,172 + +1.1
133,172 + -1.8
133,172 + -1.1
133,172 + +0.1
133,173 - -1.5
133,173 - -0.4
133,173 - +1.0
133,173 - +0.4
133,412 + MPMX19_02883 0.73 -0.8
133,514 - -0.9
133,623 + -2.2
133,623 + -0.9
133,624 - -0.1
133,624 - +0.4
133,704 + MPMX19_02884 0.15 -0.8
133,704 + MPMX19_02884 0.15 -2.1
133,704 + MPMX19_02884 0.15 -2.3
133,704 + MPMX19_02884 0.15 -2.4
133,705 - MPMX19_02884 0.15 -0.1
133,705 - MPMX19_02884 0.15 -1.4
133,705 - MPMX19_02884 0.15 +0.8
133,705 - MPMX19_02884 0.15 -0.7
133,705 - MPMX19_02884 0.15 -0.3
133,705 - MPMX19_02884 0.15 +0.1
133,866 + MPMX19_02884 0.27 -0.1
133,866 + MPMX19_02884 0.27 +0.8
133,866 + MPMX19_02884 0.27 -0.7
133,866 + MPMX19_02884 0.27 -0.9
133,866 + MPMX19_02884 0.27 -0.4
133,867 - MPMX19_02884 0.27 +0.6
133,867 - MPMX19_02884 0.27 -1.4
133,867 - MPMX19_02884 0.27 -0.8
133,867 - MPMX19_02884 0.27 -0.9
133,867 - MPMX19_02884 0.27 -0.6
133,902 + MPMX19_02884 0.30 +0.1
133,903 - MPMX19_02884 0.30 -0.2
133,903 - MPMX19_02884 0.30 +0.2
134,028 + MPMX19_02884 0.39 -0.1
134,028 + MPMX19_02884 0.39 -0.6
134,053 - MPMX19_02884 0.41 -0.1
134,053 - MPMX19_02884 0.41 -0.5
134,206 - MPMX19_02884 0.52 -0.4
134,403 + MPMX19_02884 0.67 -1.0
134,403 + MPMX19_02884 0.67 -0.7
134,404 - MPMX19_02884 0.67 -0.4
134,404 - MPMX19_02884 0.67 +0.1

Or see this region's nucleotide sequence