Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02752

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02750 and MPMX19_02751 overlap by 57 nucleotidesMPMX19_02751 and MPMX19_02752 overlap by 4 nucleotidesMPMX19_02752 and MPMX19_02753 are separated by 90 nucleotidesMPMX19_02753 and MPMX19_02754 are separated by 164 nucleotides MPMX19_02750: MPMX19_02750 - hypothetical protein, at 2,894,919 to 2,896,007 _02750 MPMX19_02751: MPMX19_02751 - hypothetical protein, at 2,895,951 to 2,896,154 _02751 MPMX19_02752: MPMX19_02752 - hypothetical protein, at 2,896,151 to 2,896,414 _02752 MPMX19_02753: MPMX19_02753 - Inorganic pyrophosphatase, at 2,896,505 to 2,897,062 _02753 MPMX19_02754: MPMX19_02754 - hypothetical protein, at 2,897,227 to 2,899,032 _02754 Position (kb) 2896 2897Strain fitness (log2 ratio) -2 -1 0 1 2at 2895.198 kb on + strand, within MPMX19_02750at 2895.198 kb on + strand, within MPMX19_02750at 2895.198 kb on + strand, within MPMX19_02750at 2895.199 kb on - strand, within MPMX19_02750at 2895.294 kb on + strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.295 kb on - strand, within MPMX19_02750at 2895.300 kb on + strand, within MPMX19_02750at 2895.300 kb on + strand, within MPMX19_02750at 2895.301 kb on - strand, within MPMX19_02750at 2895.301 kb on - strand, within MPMX19_02750at 2895.301 kb on - strand, within MPMX19_02750at 2895.301 kb on - strand, within MPMX19_02750at 2895.301 kb on - strand, within MPMX19_02750at 2895.433 kb on + strand, within MPMX19_02750at 2895.433 kb on + strand, within MPMX19_02750at 2895.434 kb on - strand, within MPMX19_02750at 2895.434 kb on - strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.561 kb on + strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.562 kb on - strand, within MPMX19_02750at 2895.574 kb on + strand, within MPMX19_02750at 2895.575 kb on - strand, within MPMX19_02750at 2895.575 kb on - strand, within MPMX19_02750at 2895.638 kb on + strand, within MPMX19_02750at 2895.639 kb on - strand, within MPMX19_02750at 2895.795 kb on + strand, within MPMX19_02750at 2895.795 kb on + strand, within MPMX19_02750at 2895.795 kb on + strand, within MPMX19_02750at 2895.795 kb on + strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.796 kb on - strand, within MPMX19_02750at 2895.952 kb on + strandat 2895.952 kb on + strandat 2895.953 kb on - strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.161 kb on + strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.162 kb on - strandat 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.193 kb on + strand, within MPMX19_02752at 2896.194 kb on - strand, within MPMX19_02752at 2896.194 kb on - strand, within MPMX19_02752at 2896.194 kb on - strand, within MPMX19_02752at 2896.194 kb on - strand, within MPMX19_02752at 2896.194 kb on - strand, within MPMX19_02752at 2896.208 kb on + strand, within MPMX19_02752at 2896.208 kb on + strand, within MPMX19_02752at 2896.208 kb on + strand, within MPMX19_02752at 2896.208 kb on + strand, within MPMX19_02752at 2896.209 kb on - strand, within MPMX19_02752at 2896.209 kb on - strand, within MPMX19_02752at 2896.209 kb on - strand, within MPMX19_02752at 2896.209 kb on - strand, within MPMX19_02752at 2896.245 kb on + strand, within MPMX19_02752at 2896.252 kb on - strand, within MPMX19_02752at 2896.252 kb on - strand, within MPMX19_02752at 2896.346 kb on + strand, within MPMX19_02752at 2896.347 kb on - strand, within MPMX19_02752at 2896.365 kb on + strand, within MPMX19_02752at 2896.365 kb on + strand, within MPMX19_02752at 2896.366 kb on - strand, within MPMX19_02752at 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.087 kb on - strandat 2897.150 kb on - strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.249 kb on + strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.250 kb on - strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.362 kb on + strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strandat 2897.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,895,198 + MPMX19_02750 0.26 -0.8
2,895,198 + MPMX19_02750 0.26 -1.6
2,895,198 + MPMX19_02750 0.26 -1.3
2,895,199 - MPMX19_02750 0.26 -0.7
2,895,294 + MPMX19_02750 0.34 +1.3
2,895,295 - MPMX19_02750 0.35 -0.1
2,895,295 - MPMX19_02750 0.35 +2.1
2,895,295 - MPMX19_02750 0.35 +0.2
2,895,295 - MPMX19_02750 0.35 -0.2
2,895,295 - MPMX19_02750 0.35 -0.7
2,895,295 - MPMX19_02750 0.35 +0.4
2,895,300 + MPMX19_02750 0.35 -1.3
2,895,300 + MPMX19_02750 0.35 -1.0
2,895,301 - MPMX19_02750 0.35 -0.3
2,895,301 - MPMX19_02750 0.35 -1.2
2,895,301 - MPMX19_02750 0.35 -0.1
2,895,301 - MPMX19_02750 0.35 -0.2
2,895,301 - MPMX19_02750 0.35 -0.1
2,895,433 + MPMX19_02750 0.47 -0.5
2,895,433 + MPMX19_02750 0.47 -0.8
2,895,434 - MPMX19_02750 0.47 -0.3
2,895,434 - MPMX19_02750 0.47 +0.1
2,895,561 + MPMX19_02750 0.59 -1.4
2,895,561 + MPMX19_02750 0.59 +1.6
2,895,561 + MPMX19_02750 0.59 -0.5
2,895,561 + MPMX19_02750 0.59 -1.1
2,895,561 + MPMX19_02750 0.59 -0.6
2,895,561 + MPMX19_02750 0.59 -1.2
2,895,561 + MPMX19_02750 0.59 -0.3
2,895,561 + MPMX19_02750 0.59 -1.0
2,895,561 + MPMX19_02750 0.59 +1.9
2,895,562 - MPMX19_02750 0.59 -1.7
2,895,562 - MPMX19_02750 0.59 -0.8
2,895,562 - MPMX19_02750 0.59 -1.5
2,895,562 - MPMX19_02750 0.59 -1.7
2,895,562 - MPMX19_02750 0.59 -1.3
2,895,562 - MPMX19_02750 0.59 -0.5
2,895,562 - MPMX19_02750 0.59 -0.3
2,895,574 + MPMX19_02750 0.60 +0.5
2,895,575 - MPMX19_02750 0.60 -2.0
2,895,575 - MPMX19_02750 0.60 +0.5
2,895,638 + MPMX19_02750 0.66 +0.9
2,895,639 - MPMX19_02750 0.66 +0.7
2,895,795 + MPMX19_02750 0.80 +0.2
2,895,795 + MPMX19_02750 0.80 -0.5
2,895,795 + MPMX19_02750 0.80 -2.3
2,895,795 + MPMX19_02750 0.80 -1.5
2,895,796 - MPMX19_02750 0.81 -1.7
2,895,796 - MPMX19_02750 0.81 +0.6
2,895,796 - MPMX19_02750 0.81 -0.8
2,895,796 - MPMX19_02750 0.81 +0.2
2,895,796 - MPMX19_02750 0.81 +0.2
2,895,796 - MPMX19_02750 0.81 -0.1
2,895,796 - MPMX19_02750 0.81 -0.8
2,895,952 + -0.3
2,895,952 + -1.7
2,895,953 - -1.2
2,896,161 + -0.3
2,896,161 + -0.8
2,896,161 + -1.1
2,896,161 + +1.2
2,896,161 + -0.8
2,896,161 + +0.3
2,896,161 + -1.4
2,896,161 + +0.2
2,896,161 + -0.3
2,896,161 + -0.7
2,896,161 + -0.1
2,896,161 + -0.7
2,896,161 + -2.0
2,896,162 - +0.2
2,896,162 - -0.1
2,896,162 - +0.9
2,896,162 - -1.7
2,896,162 - +1.0
2,896,162 - +0.0
2,896,162 - +1.3
2,896,162 - +0.2
2,896,162 - -1.9
2,896,162 - -0.4
2,896,162 - -2.1
2,896,193 + MPMX19_02752 0.16 +0.3
2,896,193 + MPMX19_02752 0.16 -0.7
2,896,193 + MPMX19_02752 0.16 +0.7
2,896,193 + MPMX19_02752 0.16 -0.7
2,896,193 + MPMX19_02752 0.16 -0.8
2,896,193 + MPMX19_02752 0.16 +0.6
2,896,193 + MPMX19_02752 0.16 -1.0
2,896,194 - MPMX19_02752 0.16 -1.6
2,896,194 - MPMX19_02752 0.16 +1.9
2,896,194 - MPMX19_02752 0.16 +1.0
2,896,194 - MPMX19_02752 0.16 -0.8
2,896,194 - MPMX19_02752 0.16 +0.9
2,896,208 + MPMX19_02752 0.22 -1.0
2,896,208 + MPMX19_02752 0.22 +0.2
2,896,208 + MPMX19_02752 0.22 -1.4
2,896,208 + MPMX19_02752 0.22 -1.0
2,896,209 - MPMX19_02752 0.22 +0.0
2,896,209 - MPMX19_02752 0.22 -0.7
2,896,209 - MPMX19_02752 0.22 +0.9
2,896,209 - MPMX19_02752 0.22 -0.4
2,896,245 + MPMX19_02752 0.36 +0.7
2,896,252 - MPMX19_02752 0.38 -1.0
2,896,252 - MPMX19_02752 0.38 +0.9
2,896,346 + MPMX19_02752 0.74 +0.8
2,896,347 - MPMX19_02752 0.74 +1.3
2,896,365 + MPMX19_02752 0.81 -0.4
2,896,365 + MPMX19_02752 0.81 +0.8
2,896,366 - MPMX19_02752 0.81 -0.5
2,897,087 - -0.3
2,897,087 - +0.2
2,897,087 - -1.5
2,897,087 - +0.2
2,897,087 - -0.7
2,897,087 - -0.1
2,897,087 - -0.6
2,897,150 - -2.2
2,897,249 + -1.6
2,897,249 + -1.5
2,897,249 + +1.8
2,897,249 + -0.1
2,897,249 + -1.0
2,897,249 + -0.8
2,897,249 + +0.5
2,897,249 + +0.4
2,897,249 + +0.3
2,897,249 + +0.5
2,897,249 + -1.4
2,897,249 + +0.9
2,897,249 + -0.1
2,897,249 + -1.0
2,897,249 + -0.3
2,897,249 + +0.2
2,897,249 + -1.1
2,897,249 + +1.1
2,897,249 + -0.7
2,897,249 + +0.7
2,897,249 + +0.1
2,897,249 + +0.3
2,897,249 + -0.7
2,897,249 + +0.7
2,897,249 + -1.2
2,897,249 + -1.0
2,897,249 + -0.1
2,897,249 + -0.6
2,897,250 - -1.0
2,897,250 - -1.9
2,897,250 - -1.2
2,897,250 - +0.2
2,897,250 - -1.3
2,897,250 - +0.2
2,897,250 - -1.3
2,897,250 - -1.2
2,897,250 - -0.1
2,897,250 - -1.1
2,897,250 - -0.7
2,897,250 - -1.2
2,897,250 - +0.2
2,897,250 - -1.1
2,897,250 - -0.6
2,897,250 - -2.1
2,897,250 - -0.0
2,897,250 - -2.3
2,897,250 - -1.2
2,897,250 - -0.4
2,897,250 - -2.0
2,897,250 - -0.9
2,897,362 + -0.3
2,897,362 + -0.7
2,897,362 + +0.0
2,897,362 + -0.3
2,897,362 + -0.1
2,897,362 + -1.4
2,897,362 + +0.2
2,897,362 + -1.3
2,897,362 + +0.9
2,897,362 + +1.3
2,897,362 + -2.3
2,897,362 + -0.7
2,897,362 + +1.9
2,897,362 + +0.4
2,897,362 + -0.4
2,897,362 + -1.0
2,897,362 + -0.6
2,897,362 + -0.3
2,897,362 + +0.9
2,897,363 - +0.5
2,897,363 - -0.5
2,897,363 - -0.2
2,897,363 - -0.5
2,897,363 - -0.8
2,897,363 - +0.8
2,897,363 - -0.8
2,897,363 - -0.5
2,897,363 - -1.9
2,897,363 - +0.5
2,897,363 - -1.0
2,897,363 - -0.3
2,897,363 - +0.7
2,897,363 - -1.7

Or see this region's nucleotide sequence