Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02332

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02331 and MPMX19_02332 are separated by 255 nucleotides MPMX19_02331: MPMX19_02331 - putative transport protein HsrA, at 2,452,482 to 2,453,933 _02331 MPMX19_02332: MPMX19_02332 - HTH-type transcriptional regulator HdfR, at 2,454,189 to 2,455,079 _02332 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -3 -2 -1 0 1at 2453.253 kb on + strand, within MPMX19_02331at 2453.253 kb on + strand, within MPMX19_02331at 2453.253 kb on + strand, within MPMX19_02331at 2453.254 kb on - strand, within MPMX19_02331at 2453.254 kb on - strand, within MPMX19_02331at 2453.467 kb on - strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.496 kb on + strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.497 kb on - strand, within MPMX19_02331at 2453.601 kb on + strand, within MPMX19_02331at 2453.601 kb on + strand, within MPMX19_02331at 2453.602 kb on - strand, within MPMX19_02331at 2453.602 kb on - strand, within MPMX19_02331at 2453.602 kb on - strand, within MPMX19_02331at 2453.602 kb on - strand, within MPMX19_02331at 2453.602 kb on - strand, within MPMX19_02331at 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.846 kb on + strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.847 kb on - strandat 2453.931 kb on + strandat 2453.931 kb on + strandat 2453.931 kb on + strandat 2453.932 kb on - strandat 2453.976 kb on + strandat 2453.976 kb on + strandat 2453.977 kb on - strandat 2453.977 kb on - strandat 2453.977 kb on - strandat 2453.993 kb on + strandat 2453.993 kb on + strandat 2453.994 kb on - strandat 2453.995 kb on + strandat 2453.996 kb on - strandat 2453.996 kb on - strandat 2454.001 kb on + strandat 2454.001 kb on + strandat 2454.033 kb on + strandat 2454.033 kb on + strandat 2454.033 kb on + strandat 2454.034 kb on - strandat 2454.034 kb on - strandat 2454.034 kb on - strandat 2454.074 kb on + strandat 2454.074 kb on + strandat 2454.074 kb on + strandat 2454.075 kb on - strandat 2454.075 kb on - strandat 2454.075 kb on - strandat 2454.075 kb on - strandat 2454.075 kb on - strandat 2454.075 kb on - strandat 2454.077 kb on + strandat 2454.078 kb on - strandat 2454.078 kb on - strandat 2454.078 kb on - strandat 2454.078 kb on - strandat 2454.108 kb on + strandat 2454.108 kb on + strandat 2454.108 kb on + strandat 2454.143 kb on + strandat 2454.143 kb on + strandat 2455.142 kb on - strandat 2455.176 kb on + strandat 2455.184 kb on + strandat 2455.225 kb on + strandat 2455.226 kb on - strandat 2455.227 kb on + strandat 2455.228 kb on - strandat 2455.415 kb on + strandat 2455.415 kb on + strandat 2455.416 kb on - strandat 2455.416 kb on - strandat 2455.416 kb on - strandat 2455.416 kb on - strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.521 kb on + strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.522 kb on - strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.898 kb on + strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.899 kb on - strandat 2455.908 kb on - strandat 2455.921 kb on - strandat 2456.006 kb on + strandat 2456.006 kb on + strandat 2456.006 kb on + strandat 2456.006 kb on + strandat 2456.006 kb on + strandat 2456.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,453,253 + MPMX19_02331 0.53 -0.9
2,453,253 + MPMX19_02331 0.53 -1.4
2,453,253 + MPMX19_02331 0.53 +0.1
2,453,254 - MPMX19_02331 0.53 +0.3
2,453,254 - MPMX19_02331 0.53 -0.3
2,453,467 - MPMX19_02331 0.68 +0.1
2,453,496 + MPMX19_02331 0.70 -1.2
2,453,496 + MPMX19_02331 0.70 -1.4
2,453,496 + MPMX19_02331 0.70 -0.0
2,453,496 + MPMX19_02331 0.70 +0.1
2,453,496 + MPMX19_02331 0.70 -1.6
2,453,496 + MPMX19_02331 0.70 -0.9
2,453,496 + MPMX19_02331 0.70 -1.0
2,453,496 + MPMX19_02331 0.70 -0.7
2,453,497 - MPMX19_02331 0.70 -1.2
2,453,497 - MPMX19_02331 0.70 -0.6
2,453,497 - MPMX19_02331 0.70 -0.4
2,453,497 - MPMX19_02331 0.70 +0.3
2,453,497 - MPMX19_02331 0.70 +0.3
2,453,497 - MPMX19_02331 0.70 -0.5
2,453,601 + MPMX19_02331 0.77 -0.2
2,453,601 + MPMX19_02331 0.77 -1.2
2,453,602 - MPMX19_02331 0.77 +0.8
2,453,602 - MPMX19_02331 0.77 -1.8
2,453,602 - MPMX19_02331 0.77 -0.4
2,453,602 - MPMX19_02331 0.77 -0.0
2,453,602 - MPMX19_02331 0.77 +0.1
2,453,846 + -1.9
2,453,846 + -0.7
2,453,846 + -0.4
2,453,846 + -1.8
2,453,846 + -0.4
2,453,846 + -1.0
2,453,846 + -1.8
2,453,846 + -0.3
2,453,847 - -0.8
2,453,847 - -0.7
2,453,847 - -1.0
2,453,847 - -1.2
2,453,847 - -1.0
2,453,847 - -0.7
2,453,847 - -2.3
2,453,931 + -0.2
2,453,931 + -0.9
2,453,931 + +0.4
2,453,932 - -1.1
2,453,976 + -1.2
2,453,976 + -0.7
2,453,977 - -1.3
2,453,977 - -3.0
2,453,977 - -1.2
2,453,993 + -0.2
2,453,993 + +1.4
2,453,994 - -1.0
2,453,995 + +1.1
2,453,996 - -0.2
2,453,996 - +0.3
2,454,001 + -0.2
2,454,001 + -3.0
2,454,033 + +0.1
2,454,033 + -2.4
2,454,033 + -1.4
2,454,034 - +0.1
2,454,034 - -0.2
2,454,034 - +0.6
2,454,074 + -1.7
2,454,074 + -0.2
2,454,074 + -1.0
2,454,075 - -0.4
2,454,075 - -1.0
2,454,075 - -2.0
2,454,075 - -0.6
2,454,075 - -1.4
2,454,075 - +0.1
2,454,077 + -0.4
2,454,078 - -1.6
2,454,078 - +0.8
2,454,078 - -0.2
2,454,078 - -1.4
2,454,108 + -1.3
2,454,108 + +0.2
2,454,108 + +1.0
2,454,143 + -0.3
2,454,143 + -0.0
2,455,142 - -0.3
2,455,176 + -0.2
2,455,184 + -0.7
2,455,225 + -0.2
2,455,226 - -0.9
2,455,227 + -1.6
2,455,228 - -1.6
2,455,415 + +1.0
2,455,415 + +1.1
2,455,416 - +1.0
2,455,416 - +1.2
2,455,416 - -1.9
2,455,416 - -0.7
2,455,521 + -0.9
2,455,521 + -0.9
2,455,521 + +0.4
2,455,521 + -0.7
2,455,521 + -1.2
2,455,521 + -0.4
2,455,521 + -0.4
2,455,521 + -1.5
2,455,521 + -1.6
2,455,521 + -0.8
2,455,522 - -0.4
2,455,522 - -0.3
2,455,522 - -1.5
2,455,522 - -1.7
2,455,522 - -1.4
2,455,522 - -1.2
2,455,522 - -1.2
2,455,898 + -1.8
2,455,898 + +0.1
2,455,898 + +0.8
2,455,898 + -0.4
2,455,898 + -2.2
2,455,898 + -0.8
2,455,898 + +0.4
2,455,898 + -0.2
2,455,898 + -0.1
2,455,898 + -0.7
2,455,898 + -0.4
2,455,898 + -0.6
2,455,898 + -1.2
2,455,898 + -1.2
2,455,898 + -1.0
2,455,898 + +0.2
2,455,898 + -1.3
2,455,898 + -2.4
2,455,898 + -1.1
2,455,898 + -0.2
2,455,899 - -0.4
2,455,899 - -1.6
2,455,899 - -0.3
2,455,899 - -0.0
2,455,899 - -2.1
2,455,899 - -0.9
2,455,899 - -0.8
2,455,899 - -0.6
2,455,899 - -0.9
2,455,899 - -0.3
2,455,899 - -0.3
2,455,899 - -1.0
2,455,899 - +1.2
2,455,899 - +0.8
2,455,899 - -1.3
2,455,899 - -1.3
2,455,899 - -1.8
2,455,899 - +0.4
2,455,899 - -0.0
2,455,899 - -2.3
2,455,899 - +0.1
2,455,908 - -0.8
2,455,921 - +0.0
2,456,006 + +1.7
2,456,006 + -0.6
2,456,006 + -1.0
2,456,006 + +0.2
2,456,006 + -0.1
2,456,007 - -0.0

Or see this region's nucleotide sequence