Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02006

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02004 and MPMX19_02005 are separated by 6 nucleotidesMPMX19_02005 and MPMX19_02006 are separated by 5 nucleotidesMPMX19_02006 and MPMX19_02007 are separated by 47 nucleotidesMPMX19_02007 and MPMX19_02008 are separated by 141 nucleotides MPMX19_02004: MPMX19_02004 - hypothetical protein, at 2,093,112 to 2,094,077 _02004 MPMX19_02005: MPMX19_02005 - tRNA pseudouridine synthase A, at 2,094,084 to 2,094,821 _02005 MPMX19_02006: MPMX19_02006 - Methionyl-tRNA formyltransferase, at 2,094,827 to 2,095,783 _02006 MPMX19_02007: MPMX19_02007 - Peptide deformylase 1, at 2,095,831 to 2,096,343 _02007 MPMX19_02008: MPMX19_02008 - Adenosylcobinamide-GDP ribazoletransferase, at 2,096,485 to 2,097,321 _02008 Position (kb) 2094 2095 2096Strain fitness (log2 ratio) -3 -2 -1 0 1at 2093.883 kb on + strand, within MPMX19_02004at 2093.883 kb on + strand, within MPMX19_02004at 2093.883 kb on + strand, within MPMX19_02004at 2093.883 kb on + strand, within MPMX19_02004at 2093.883 kb on + strand, within MPMX19_02004at 2093.883 kb on + strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2093.884 kb on - strand, within MPMX19_02004at 2094.088 kb on + strandat 2094.089 kb on - strandat 2094.107 kb on - strandat 2094.490 kb on + strand, within MPMX19_02005at 2094.491 kb on - strand, within MPMX19_02005at 2095.793 kb on - strandat 2095.793 kb on - strandat 2095.793 kb on - strandat 2096.361 kb on - strandat 2096.386 kb on - strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,093,883 + MPMX19_02004 0.80 -0.6
2,093,883 + MPMX19_02004 0.80 -1.9
2,093,883 + MPMX19_02004 0.80 -0.2
2,093,883 + MPMX19_02004 0.80 -2.2
2,093,883 + MPMX19_02004 0.80 -0.4
2,093,883 + MPMX19_02004 0.80 -0.8
2,093,884 - MPMX19_02004 0.80 -0.4
2,093,884 - MPMX19_02004 0.80 +0.1
2,093,884 - MPMX19_02004 0.80 +0.4
2,093,884 - MPMX19_02004 0.80 -2.1
2,093,884 - MPMX19_02004 0.80 -2.6
2,093,884 - MPMX19_02004 0.80 -1.1
2,093,884 - MPMX19_02004 0.80 -0.5
2,093,884 - MPMX19_02004 0.80 -2.2
2,093,884 - MPMX19_02004 0.80 -1.2
2,093,884 - MPMX19_02004 0.80 +0.1
2,093,884 - MPMX19_02004 0.80 -0.6
2,093,884 - MPMX19_02004 0.80 +0.1
2,094,088 + -1.1
2,094,089 - -0.4
2,094,107 - -0.4
2,094,490 + MPMX19_02005 0.55 -0.4
2,094,491 - MPMX19_02005 0.55 +0.1
2,095,793 - -1.8
2,095,793 - -0.9
2,095,793 - +0.8
2,096,361 - +0.8
2,096,386 - -1.3
2,096,421 + -0.3
2,096,421 + -0.8
2,096,421 + -0.4
2,096,421 + -1.8
2,096,421 + -1.2
2,096,421 + +0.2
2,096,421 + -0.8
2,096,422 - -2.4
2,096,422 - +0.1
2,096,422 - -0.6
2,096,422 - +0.4
2,096,422 - +0.5
2,096,422 - +0.8
2,096,422 - -1.4
2,096,422 - -0.7
2,096,422 - +0.1
2,096,422 - +0.4
2,096,479 + -3.2
2,096,479 + -1.1
2,096,479 + +1.0
2,096,479 + -1.1
2,096,479 + -0.3

Or see this region's nucleotide sequence