Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01005

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01004 and MPMX19_01005 are separated by 100 nucleotidesMPMX19_01005 and MPMX19_01006 are separated by 9 nucleotidesMPMX19_01006 and MPMX19_01007 are separated by 22 nucleotides MPMX19_01004: MPMX19_01004 - HTH-type transcriptional regulator CdhR, at 1,044,744 to 1,045,778 _01004 MPMX19_01005: MPMX19_01005 - hypothetical protein, at 1,045,879 to 1,046,277 _01005 MPMX19_01006: MPMX19_01006 - hypothetical protein, at 1,046,287 to 1,046,460 _01006 MPMX19_01007: MPMX19_01007 - Citrate synthase, at 1,046,483 to 1,047,796 _01007 Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1045.079 kb on + strand, within MPMX19_01004at 1045.079 kb on + strand, within MPMX19_01004at 1045.079 kb on + strand, within MPMX19_01004at 1045.080 kb on - strand, within MPMX19_01004at 1045.080 kb on - strand, within MPMX19_01004at 1045.080 kb on - strand, within MPMX19_01004at 1045.080 kb on - strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.324 kb on + strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.325 kb on - strand, within MPMX19_01004at 1045.357 kb on + strand, within MPMX19_01004at 1045.357 kb on + strand, within MPMX19_01004at 1045.358 kb on - strand, within MPMX19_01004at 1045.381 kb on + strand, within MPMX19_01004at 1045.381 kb on + strand, within MPMX19_01004at 1045.381 kb on + strand, within MPMX19_01004at 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.738 kb on + strandat 1045.739 kb on - strandat 1045.739 kb on - strandat 1045.790 kb on + strandat 1045.790 kb on + strandat 1046.041 kb on + strand, within MPMX19_01005at 1046.041 kb on + strand, within MPMX19_01005at 1046.041 kb on + strand, within MPMX19_01005at 1046.041 kb on + strand, within MPMX19_01005at 1046.042 kb on - strand, within MPMX19_01005at 1046.042 kb on - strand, within MPMX19_01005at 1046.042 kb on - strand, within MPMX19_01005at 1046.042 kb on - strand, within MPMX19_01005at 1046.042 kb on - strand, within MPMX19_01005at 1046.140 kb on + strand, within MPMX19_01005at 1046.140 kb on + strand, within MPMX19_01005at 1046.140 kb on + strand, within MPMX19_01005at 1046.141 kb on - strand, within MPMX19_01005at 1046.141 kb on - strand, within MPMX19_01005at 1046.141 kb on - strand, within MPMX19_01005at 1046.141 kb on - strand, within MPMX19_01005at 1046.330 kb on + strand, within MPMX19_01006at 1046.330 kb on + strand, within MPMX19_01006at 1046.330 kb on + strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.331 kb on - strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.420 kb on + strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.421 kb on - strand, within MPMX19_01006at 1046.532 kb on + strandat 1046.532 kb on + strandat 1046.532 kb on + strandat 1046.533 kb on - strandat 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.718 kb on + strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.842 kb on - strand, within MPMX19_01007at 1046.851 kb on - strand, within MPMX19_01007at 1046.851 kb on - strand, within MPMX19_01007at 1047.177 kb on + strand, within MPMX19_01007at 1047.177 kb on + strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.178 kb on - strand, within MPMX19_01007at 1047.196 kb on - strand, within MPMX19_01007at 1047.196 kb on - strand, within MPMX19_01007at 1047.216 kb on + strand, within MPMX19_01007at 1047.217 kb on - strand, within MPMX19_01007at 1047.217 kb on - strand, within MPMX19_01007at 1047.217 kb on - strand, within MPMX19_01007at 1047.240 kb on + strand, within MPMX19_01007at 1047.240 kb on + strand, within MPMX19_01007at 1047.240 kb on + strand, within MPMX19_01007at 1047.241 kb on - strand, within MPMX19_01007at 1047.241 kb on - strand, within MPMX19_01007at 1047.241 kb on - strand, within MPMX19_01007at 1047.241 kb on - strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.246 kb on + strand, within MPMX19_01007at 1047.247 kb on - strand, within MPMX19_01007at 1047.247 kb on - strand, within MPMX19_01007

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,045,079 + MPMX19_01004 0.32 +1.4
1,045,079 + MPMX19_01004 0.32 -0.1
1,045,079 + MPMX19_01004 0.32 -0.6
1,045,080 - MPMX19_01004 0.32 -0.8
1,045,080 - MPMX19_01004 0.32 +1.1
1,045,080 - MPMX19_01004 0.32 -1.0
1,045,080 - MPMX19_01004 0.32 +0.5
1,045,324 + MPMX19_01004 0.56 -0.1
1,045,324 + MPMX19_01004 0.56 -1.0
1,045,324 + MPMX19_01004 0.56 -1.2
1,045,324 + MPMX19_01004 0.56 -0.6
1,045,324 + MPMX19_01004 0.56 +0.4
1,045,324 + MPMX19_01004 0.56 +0.9
1,045,324 + MPMX19_01004 0.56 -2.1
1,045,324 + MPMX19_01004 0.56 -2.3
1,045,324 + MPMX19_01004 0.56 +0.9
1,045,324 + MPMX19_01004 0.56 -1.0
1,045,324 + MPMX19_01004 0.56 +1.0
1,045,324 + MPMX19_01004 0.56 +0.8
1,045,324 + MPMX19_01004 0.56 -0.8
1,045,324 + MPMX19_01004 0.56 -2.0
1,045,324 + MPMX19_01004 0.56 -1.0
1,045,324 + MPMX19_01004 0.56 -1.6
1,045,324 + MPMX19_01004 0.56 -0.6
1,045,324 + MPMX19_01004 0.56 -0.4
1,045,324 + MPMX19_01004 0.56 -0.7
1,045,324 + MPMX19_01004 0.56 -2.0
1,045,324 + MPMX19_01004 0.56 -0.2
1,045,324 + MPMX19_01004 0.56 +0.4
1,045,324 + MPMX19_01004 0.56 -1.2
1,045,324 + MPMX19_01004 0.56 -2.0
1,045,325 - MPMX19_01004 0.56 -1.5
1,045,325 - MPMX19_01004 0.56 -0.5
1,045,325 - MPMX19_01004 0.56 -0.4
1,045,325 - MPMX19_01004 0.56 -1.0
1,045,325 - MPMX19_01004 0.56 -1.1
1,045,325 - MPMX19_01004 0.56 -0.1
1,045,325 - MPMX19_01004 0.56 -0.2
1,045,325 - MPMX19_01004 0.56 +0.1
1,045,325 - MPMX19_01004 0.56 -0.5
1,045,325 - MPMX19_01004 0.56 +1.9
1,045,325 - MPMX19_01004 0.56 -2.3
1,045,325 - MPMX19_01004 0.56 -1.1
1,045,325 - MPMX19_01004 0.56 +0.0
1,045,325 - MPMX19_01004 0.56 -1.4
1,045,325 - MPMX19_01004 0.56 -0.4
1,045,325 - MPMX19_01004 0.56 +0.4
1,045,325 - MPMX19_01004 0.56 -1.0
1,045,325 - MPMX19_01004 0.56 -1.4
1,045,325 - MPMX19_01004 0.56 -1.7
1,045,325 - MPMX19_01004 0.56 -1.9
1,045,325 - MPMX19_01004 0.56 -0.6
1,045,325 - MPMX19_01004 0.56 -2.5
1,045,325 - MPMX19_01004 0.56 +0.2
1,045,357 + MPMX19_01004 0.59 -1.1
1,045,357 + MPMX19_01004 0.59 +0.0
1,045,358 - MPMX19_01004 0.59 -2.2
1,045,381 + MPMX19_01004 0.62 +0.4
1,045,381 + MPMX19_01004 0.62 -1.1
1,045,381 + MPMX19_01004 0.62 +0.8
1,045,738 + -0.4
1,045,738 + -1.9
1,045,738 + -0.9
1,045,738 + -1.3
1,045,738 + -1.3
1,045,738 + +0.8
1,045,738 + -1.4
1,045,739 - -0.9
1,045,739 - +0.6
1,045,790 + -1.8
1,045,790 + +1.4
1,046,041 + MPMX19_01005 0.41 +0.0
1,046,041 + MPMX19_01005 0.41 -1.3
1,046,041 + MPMX19_01005 0.41 -0.3
1,046,041 + MPMX19_01005 0.41 -2.4
1,046,042 - MPMX19_01005 0.41 -2.7
1,046,042 - MPMX19_01005 0.41 -0.8
1,046,042 - MPMX19_01005 0.41 +0.4
1,046,042 - MPMX19_01005 0.41 +0.0
1,046,042 - MPMX19_01005 0.41 -0.6
1,046,140 + MPMX19_01005 0.65 -0.3
1,046,140 + MPMX19_01005 0.65 +0.6
1,046,140 + MPMX19_01005 0.65 -0.3
1,046,141 - MPMX19_01005 0.66 +0.0
1,046,141 - MPMX19_01005 0.66 -0.6
1,046,141 - MPMX19_01005 0.66 +0.4
1,046,141 - MPMX19_01005 0.66 -0.5
1,046,330 + MPMX19_01006 0.25 +0.4
1,046,330 + MPMX19_01006 0.25 -0.8
1,046,330 + MPMX19_01006 0.25 -1.5
1,046,331 - MPMX19_01006 0.25 -1.0
1,046,331 - MPMX19_01006 0.25 +0.2
1,046,331 - MPMX19_01006 0.25 +1.1
1,046,331 - MPMX19_01006 0.25 -0.3
1,046,331 - MPMX19_01006 0.25 +0.0
1,046,331 - MPMX19_01006 0.25 +0.0
1,046,331 - MPMX19_01006 0.25 -1.2
1,046,331 - MPMX19_01006 0.25 +3.9
1,046,331 - MPMX19_01006 0.25 -0.3
1,046,420 + MPMX19_01006 0.76 -1.1
1,046,420 + MPMX19_01006 0.76 -0.6
1,046,420 + MPMX19_01006 0.76 +0.5
1,046,420 + MPMX19_01006 0.76 -0.6
1,046,420 + MPMX19_01006 0.76 -1.2
1,046,420 + MPMX19_01006 0.76 +0.2
1,046,420 + MPMX19_01006 0.76 -1.2
1,046,420 + MPMX19_01006 0.76 -0.2
1,046,420 + MPMX19_01006 0.76 -2.2
1,046,420 + MPMX19_01006 0.76 -1.0
1,046,420 + MPMX19_01006 0.76 -0.1
1,046,420 + MPMX19_01006 0.76 +0.5
1,046,420 + MPMX19_01006 0.76 -1.0
1,046,420 + MPMX19_01006 0.76 +0.6
1,046,420 + MPMX19_01006 0.76 +0.1
1,046,420 + MPMX19_01006 0.76 +0.0
1,046,421 - MPMX19_01006 0.77 -1.8
1,046,421 - MPMX19_01006 0.77 -1.2
1,046,421 - MPMX19_01006 0.77 -1.0
1,046,421 - MPMX19_01006 0.77 -0.5
1,046,421 - MPMX19_01006 0.77 +0.4
1,046,421 - MPMX19_01006 0.77 -0.4
1,046,421 - MPMX19_01006 0.77 -1.2
1,046,421 - MPMX19_01006 0.77 -0.4
1,046,532 + +1.4
1,046,532 + +0.0
1,046,532 + +0.0
1,046,533 - +0.8
1,046,718 + MPMX19_01007 0.18 -0.8
1,046,718 + MPMX19_01007 0.18 +0.8
1,046,718 + MPMX19_01007 0.18 +0.3
1,046,718 + MPMX19_01007 0.18 +0.1
1,046,718 + MPMX19_01007 0.18 -1.0
1,046,718 + MPMX19_01007 0.18 +1.9
1,046,718 + MPMX19_01007 0.18 -0.2
1,046,842 - MPMX19_01007 0.27 -1.5
1,046,842 - MPMX19_01007 0.27 -0.4
1,046,842 - MPMX19_01007 0.27 +0.0
1,046,842 - MPMX19_01007 0.27 -0.4
1,046,842 - MPMX19_01007 0.27 -0.6
1,046,842 - MPMX19_01007 0.27 +0.4
1,046,842 - MPMX19_01007 0.27 +0.6
1,046,851 - MPMX19_01007 0.28 +0.4
1,046,851 - MPMX19_01007 0.28 -1.2
1,047,177 + MPMX19_01007 0.53 +1.4
1,047,177 + MPMX19_01007 0.53 +0.0
1,047,178 - MPMX19_01007 0.53 -0.2
1,047,178 - MPMX19_01007 0.53 +1.9
1,047,178 - MPMX19_01007 0.53 -0.6
1,047,178 - MPMX19_01007 0.53 +0.0
1,047,178 - MPMX19_01007 0.53 +1.8
1,047,178 - MPMX19_01007 0.53 -0.2
1,047,178 - MPMX19_01007 0.53 -0.9
1,047,178 - MPMX19_01007 0.53 +0.8
1,047,178 - MPMX19_01007 0.53 +0.6
1,047,178 - MPMX19_01007 0.53 -0.4
1,047,178 - MPMX19_01007 0.53 -1.6
1,047,178 - MPMX19_01007 0.53 +0.0
1,047,178 - MPMX19_01007 0.53 +0.4
1,047,196 - MPMX19_01007 0.54 +0.4
1,047,196 - MPMX19_01007 0.54 +1.4
1,047,216 + MPMX19_01007 0.56 -0.4
1,047,217 - MPMX19_01007 0.56 +0.0
1,047,217 - MPMX19_01007 0.56 +0.4
1,047,217 - MPMX19_01007 0.56 +0.0
1,047,240 + MPMX19_01007 0.58 +0.4
1,047,240 + MPMX19_01007 0.58 +0.8
1,047,240 + MPMX19_01007 0.58 -0.2
1,047,241 - MPMX19_01007 0.58 -0.4
1,047,241 - MPMX19_01007 0.58 -1.0
1,047,241 - MPMX19_01007 0.58 -0.2
1,047,241 - MPMX19_01007 0.58 +0.8
1,047,246 + MPMX19_01007 0.58 -0.2
1,047,246 + MPMX19_01007 0.58 -0.6
1,047,246 + MPMX19_01007 0.58 -0.2
1,047,246 + MPMX19_01007 0.58 -1.0
1,047,246 + MPMX19_01007 0.58 +2.4
1,047,246 + MPMX19_01007 0.58 +0.8
1,047,246 + MPMX19_01007 0.58 +0.0
1,047,246 + MPMX19_01007 0.58 +0.0
1,047,247 - MPMX19_01007 0.58 +0.0
1,047,247 - MPMX19_01007 0.58 -1.0

Or see this region's nucleotide sequence