Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS16050

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS16040 and RR41_RS16045 are separated by 22 nucleotidesRR41_RS16045 and RR41_RS16050 are separated by 3 nucleotidesRR41_RS16050 and RR41_RS16055 are separated by 45 nucleotidesRR41_RS16055 and RR41_RS16060 overlap by 4 nucleotides RR41_RS16040: RR41_RS16040 - RNase adapter RapZ, at 3,329,915 to 3,330,766 _RS16040 RR41_RS16045: RR41_RS16045 - pantoate--beta-alanine ligase, at 3,330,789 to 3,331,637 _RS16045 RR41_RS16050: RR41_RS16050 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,331,641 to 3,332,450 _RS16050 RR41_RS16055: RR41_RS16055 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,332,496 to 3,332,978 _RS16055 RR41_RS16060: RR41_RS16060 - polynucleotide adenylyltransferase PcnB, at 3,332,975 to 3,334,438 _RS16060 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3330.688 kb on - strandat 3330.701 kb on + strandat 3330.704 kb on + strandat 3330.752 kb on - strandat 3330.752 kb on - strandat 3330.755 kb on + strandat 3330.755 kb on + strandat 3330.756 kb on - strandat 3330.757 kb on + strandat 3330.783 kb on + strandat 3330.786 kb on - strandat 3330.786 kb on - strandat 3330.787 kb on + strandat 3330.788 kb on - strandat 3330.800 kb on + strandat 3331.798 kb on - strand, within RR41_RS16050at 3331.809 kb on + strand, within RR41_RS16050at 3331.896 kb on + strand, within RR41_RS16050at 3331.994 kb on + strand, within RR41_RS16050at 3332.052 kb on + strand, within RR41_RS16050at 3332.439 kb on + strandat 3332.482 kb on + strandat 3332.482 kb on + strandat 3332.483 kb on - strandat 3332.485 kb on + strandat 3332.486 kb on - strandat 3332.497 kb on + strandat 3332.521 kb on - strandat 3333.098 kb on - strandat 3333.098 kb on - strandat 3333.244 kb on + strand, within RR41_RS16060at 3333.245 kb on - strand, within RR41_RS16060at 3333.245 kb on - strand, within RR41_RS16060at 3333.245 kb on - strand, within RR41_RS16060at 3333.245 kb on - strand, within RR41_RS16060at 3333.245 kb on - strand, within RR41_RS16060at 3333.247 kb on - strand, within RR41_RS16060at 3333.247 kb on - strand, within RR41_RS16060at 3333.350 kb on + strand, within RR41_RS16060at 3333.350 kb on + strand, within RR41_RS16060at 3333.351 kb on - strand, within RR41_RS16060at 3333.351 kb on - strand, within RR41_RS16060at 3333.351 kb on - strand, within RR41_RS16060at 3333.351 kb on - strand, within RR41_RS16060at 3333.353 kb on + strand, within RR41_RS16060at 3333.354 kb on - strand, within RR41_RS16060at 3333.354 kb on - strand, within RR41_RS16060at 3333.354 kb on - strand, within RR41_RS16060

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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3,330,688 - -3.1
3,330,701 + +2.2
3,330,704 + -2.7
3,330,752 - -2.3
3,330,752 - -0.9
3,330,755 + -0.7
3,330,755 + -2.3
3,330,756 - -1.5
3,330,757 + +0.1
3,330,783 + -1.5
3,330,786 - +0.3
3,330,786 - +1.1
3,330,787 + -2.7
3,330,788 - +0.1
3,330,800 + +0.4
3,331,798 - RR41_RS16050 0.19 +0.1
3,331,809 + RR41_RS16050 0.21 -3.7
3,331,896 + RR41_RS16050 0.31 -0.9
3,331,994 + RR41_RS16050 0.44 +0.1
3,332,052 + RR41_RS16050 0.51 -0.9
3,332,439 + +0.1
3,332,482 + +0.7
3,332,482 + +0.1
3,332,483 - -1.5
3,332,485 + -3.1
3,332,486 - +0.9
3,332,497 + +1.3
3,332,521 - -2.5
3,333,098 - -1.9
3,333,098 - -0.5
3,333,244 + RR41_RS16060 0.18 +1.1
3,333,245 - RR41_RS16060 0.18 -0.5
3,333,245 - RR41_RS16060 0.18 -1.5
3,333,245 - RR41_RS16060 0.18 +0.8
3,333,245 - RR41_RS16060 0.18 -0.9
3,333,245 - RR41_RS16060 0.18 -0.9
3,333,247 - RR41_RS16060 0.19 -0.5
3,333,247 - RR41_RS16060 0.19 -0.9
3,333,350 + RR41_RS16060 0.26 -1.9
3,333,350 + RR41_RS16060 0.26 -1.9
3,333,351 - RR41_RS16060 0.26 -2.3
3,333,351 - RR41_RS16060 0.26 -3.3
3,333,351 - RR41_RS16060 0.26 -3.1
3,333,351 - RR41_RS16060 0.26 -0.7
3,333,353 + RR41_RS16060 0.26 -1.5
3,333,354 - RR41_RS16060 0.26 -1.9
3,333,354 - RR41_RS16060 0.26 -1.5
3,333,354 - RR41_RS16060 0.26 -2.6

Or see this region's nucleotide sequence