Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13880

Experiment: RPMI_TSB_serum temperature; 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR41_RS13870 and RR41_RS13875 are separated by 135 nucleotidesRR41_RS13875 and RR41_RS13880 are separated by 2 nucleotidesRR41_RS13880 and RR41_RS13885 are separated by 46 nucleotides RR41_RS13870: RR41_RS13870 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 2,899,131 to 2,901,155 _RS13870 RR41_RS13875: RR41_RS13875 - PadR family transcriptional regulator, at 2,901,291 to 2,901,851 _RS13875 RR41_RS13880: RR41_RS13880 - alpha/beta hydrolase, at 2,901,854 to 2,902,771 _RS13880 RR41_RS13885: RR41_RS13885 - 3-deoxy-7-phosphoheptulonate synthase, at 2,902,818 to 2,903,873 _RS13885 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -2 -1 0 1 2at 2900.880 kb on + strand, within RR41_RS13870at 2900.929 kb on - strand, within RR41_RS13870at 2901.008 kb on + strandat 2901.036 kb on - strandat 2901.148 kb on - strandat 2901.575 kb on - strand, within RR41_RS13875at 2901.649 kb on + strand, within RR41_RS13875at 2901.685 kb on - strand, within RR41_RS13875at 2901.705 kb on - strand, within RR41_RS13875at 2901.720 kb on - strand, within RR41_RS13875at 2901.730 kb on + strand, within RR41_RS13875at 2901.732 kb on + strand, within RR41_RS13875at 2902.113 kb on + strand, within RR41_RS13880at 2902.210 kb on - strand, within RR41_RS13880at 2902.210 kb on - strand, within RR41_RS13880at 2902.275 kb on + strand, within RR41_RS13880at 2902.276 kb on - strand, within RR41_RS13880at 2902.296 kb on + strand, within RR41_RS13880at 2902.297 kb on - strand, within RR41_RS13880at 2902.317 kb on + strand, within RR41_RS13880at 2902.318 kb on - strand, within RR41_RS13880at 2902.343 kb on + strand, within RR41_RS13880at 2902.517 kb on + strand, within RR41_RS13880at 2902.649 kb on - strand, within RR41_RS13880at 2902.820 kb on - strandat 2902.897 kb on - strandat 2902.925 kb on - strand, within RR41_RS13885at 2903.063 kb on + strand, within RR41_RS13885at 2903.073 kb on - strand, within RR41_RS13885at 2903.334 kb on - strand, within RR41_RS13885at 2903.369 kb on + strand, within RR41_RS13885at 2903.476 kb on - strand, within RR41_RS13885at 2903.562 kb on + strand, within RR41_RS13885at 2903.645 kb on + strand, within RR41_RS13885at 2903.700 kb on - strand, within RR41_RS13885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
remove
2,900,880 + RR41_RS13870 0.86 -1.4
2,900,929 - RR41_RS13870 0.89 +1.8
2,901,008 + +0.6
2,901,036 - +1.2
2,901,148 - -0.8
2,901,575 - RR41_RS13875 0.51 -2.1
2,901,649 + RR41_RS13875 0.64 -0.2
2,901,685 - RR41_RS13875 0.70 +0.2
2,901,705 - RR41_RS13875 0.74 -1.8
2,901,720 - RR41_RS13875 0.76 -0.8
2,901,730 + RR41_RS13875 0.78 -1.2
2,901,732 + RR41_RS13875 0.79 -1.4
2,902,113 + RR41_RS13880 0.28 -1.8
2,902,210 - RR41_RS13880 0.39 -0.1
2,902,210 - RR41_RS13880 0.39 -1.1
2,902,275 + RR41_RS13880 0.46 -2.1
2,902,276 - RR41_RS13880 0.46 -1.8
2,902,296 + RR41_RS13880 0.48 -0.9
2,902,297 - RR41_RS13880 0.48 +0.2
2,902,317 + RR41_RS13880 0.50 -1.8
2,902,318 - RR41_RS13880 0.51 +0.1
2,902,343 + RR41_RS13880 0.53 -0.4
2,902,517 + RR41_RS13880 0.72 -1.8
2,902,649 - RR41_RS13880 0.87 -1.4
2,902,820 - -0.5
2,902,897 - +0.5
2,902,925 - RR41_RS13885 0.10 -0.8
2,903,063 + RR41_RS13885 0.23 +0.2
2,903,073 - RR41_RS13885 0.24 -1.8
2,903,334 - RR41_RS13885 0.49 -2.4
2,903,369 + RR41_RS13885 0.52 +0.2
2,903,476 - RR41_RS13885 0.62 +0.8
2,903,562 + RR41_RS13885 0.70 +1.3
2,903,645 + RR41_RS13885 0.78 -0.4
2,903,700 - RR41_RS13885 0.84 +0.2

Or see this region's nucleotide sequence