Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13870 and RR41_RS13875 are separated by 135 nucleotides RR41_RS13875 and RR41_RS13880 are separated by 2 nucleotides RR41_RS13880 and RR41_RS13885 are separated by 46 nucleotides
RR41_RS13870: RR41_RS13870 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 2,899,131 to 2,901,155
_RS13870
RR41_RS13875: RR41_RS13875 - PadR family transcriptional regulator, at 2,901,291 to 2,901,851
_RS13875
RR41_RS13880: RR41_RS13880 - alpha/beta hydrolase, at 2,901,854 to 2,902,771
_RS13880
RR41_RS13885: RR41_RS13885 - 3-deoxy-7-phosphoheptulonate synthase, at 2,902,818 to 2,903,873
_RS13885
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2900.880 kb on + strand, within RR41_RS13870 at 2900.929 kb on - strand, within RR41_RS13870 at 2901.008 kb on + strand at 2901.036 kb on - strand at 2901.148 kb on - strand at 2901.575 kb on - strand, within RR41_RS13875 at 2901.649 kb on + strand, within RR41_RS13875 at 2901.685 kb on - strand, within RR41_RS13875 at 2901.705 kb on - strand, within RR41_RS13875 at 2901.720 kb on - strand, within RR41_RS13875 at 2901.730 kb on + strand, within RR41_RS13875 at 2901.732 kb on + strand, within RR41_RS13875 at 2902.113 kb on + strand, within RR41_RS13880 at 2902.210 kb on - strand, within RR41_RS13880 at 2902.210 kb on - strand, within RR41_RS13880 at 2902.275 kb on + strand, within RR41_RS13880 at 2902.276 kb on - strand, within RR41_RS13880 at 2902.296 kb on + strand, within RR41_RS13880 at 2902.297 kb on - strand, within RR41_RS13880 at 2902.317 kb on + strand, within RR41_RS13880 at 2902.318 kb on - strand, within RR41_RS13880 at 2902.343 kb on + strand, within RR41_RS13880 at 2902.517 kb on + strand, within RR41_RS13880 at 2902.649 kb on - strand, within RR41_RS13880 at 2902.820 kb on - strand at 2902.897 kb on - strand at 2902.925 kb on - strand, within RR41_RS13885 at 2903.063 kb on + strand, within RR41_RS13885 at 2903.073 kb on - strand, within RR41_RS13885 at 2903.334 kb on - strand, within RR41_RS13885 at 2903.369 kb on + strand, within RR41_RS13885 at 2903.476 kb on - strand, within RR41_RS13885 at 2903.562 kb on + strand, within RR41_RS13885 at 2903.645 kb on + strand, within RR41_RS13885 at 2903.700 kb on - strand, within RR41_RS13885
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 2,900,880 + RR41_RS13870 0.86 -1.4 2,900,929 - RR41_RS13870 0.89 +1.8 2,901,008 + +0.6 2,901,036 - +1.2 2,901,148 - -0.8 2,901,575 - RR41_RS13875 0.51 -2.1 2,901,649 + RR41_RS13875 0.64 -0.2 2,901,685 - RR41_RS13875 0.70 +0.2 2,901,705 - RR41_RS13875 0.74 -1.8 2,901,720 - RR41_RS13875 0.76 -0.8 2,901,730 + RR41_RS13875 0.78 -1.2 2,901,732 + RR41_RS13875 0.79 -1.4 2,902,113 + RR41_RS13880 0.28 -1.8 2,902,210 - RR41_RS13880 0.39 -0.1 2,902,210 - RR41_RS13880 0.39 -1.1 2,902,275 + RR41_RS13880 0.46 -2.1 2,902,276 - RR41_RS13880 0.46 -1.8 2,902,296 + RR41_RS13880 0.48 -0.9 2,902,297 - RR41_RS13880 0.48 +0.2 2,902,317 + RR41_RS13880 0.50 -1.8 2,902,318 - RR41_RS13880 0.51 +0.1 2,902,343 + RR41_RS13880 0.53 -0.4 2,902,517 + RR41_RS13880 0.72 -1.8 2,902,649 - RR41_RS13880 0.87 -1.4 2,902,820 - -0.5 2,902,897 - +0.5 2,902,925 - RR41_RS13885 0.10 -0.8 2,903,063 + RR41_RS13885 0.23 +0.2 2,903,073 - RR41_RS13885 0.24 -1.8 2,903,334 - RR41_RS13885 0.49 -2.4 2,903,369 + RR41_RS13885 0.52 +0.2 2,903,476 - RR41_RS13885 0.62 +0.8 2,903,562 + RR41_RS13885 0.70 +1.3 2,903,645 + RR41_RS13885 0.78 -0.4 2,903,700 - RR41_RS13885 0.84 +0.2
Or see this region's nucleotide sequence