Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13795

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13785 and RR41_RS13790 are separated by 42 nucleotidesRR41_RS13790 and RR41_RS13795 overlap by 4 nucleotidesRR41_RS13795 and RR41_RS13800 are separated by 2 nucleotides RR41_RS13785: RR41_RS13785 - MFS transporter, at 2,882,154 to 2,883,509 _RS13785 RR41_RS13790: RR41_RS13790 - 3-oxoadipate enol-lactonase, at 2,883,552 to 2,884,337 _RS13790 RR41_RS13795: RR41_RS13795 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,884,334 to 2,885,689 _RS13795 RR41_RS13800: RR41_RS13800 - 3-oxoadipyl-CoA thiolase, at 2,885,692 to 2,886,903 _RS13800 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2883.434 kb on + strandat 2883.653 kb on + strand, within RR41_RS13790at 2883.901 kb on - strand, within RR41_RS13790at 2884.143 kb on + strand, within RR41_RS13790at 2884.144 kb on - strand, within RR41_RS13790at 2884.175 kb on - strand, within RR41_RS13790at 2884.395 kb on - strandat 2884.541 kb on + strand, within RR41_RS13795at 2884.625 kb on - strand, within RR41_RS13795at 2884.625 kb on - strand, within RR41_RS13795at 2884.777 kb on + strand, within RR41_RS13795at 2885.015 kb on - strand, within RR41_RS13795at 2885.015 kb on - strand, within RR41_RS13795at 2885.392 kb on - strand, within RR41_RS13795at 2886.028 kb on + strand, within RR41_RS13800at 2886.525 kb on - strand, within RR41_RS13800

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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2,883,434 + -1.8
2,883,653 + RR41_RS13790 0.13 +0.2
2,883,901 - RR41_RS13790 0.44 -2.4
2,884,143 + RR41_RS13790 0.75 -0.8
2,884,144 - RR41_RS13790 0.75 +0.2
2,884,175 - RR41_RS13790 0.79 +2.2
2,884,395 - -0.5
2,884,541 + RR41_RS13795 0.15 -1.4
2,884,625 - RR41_RS13795 0.21 -2.1
2,884,625 - RR41_RS13795 0.21 -0.8
2,884,777 + RR41_RS13795 0.33 +2.8
2,885,015 - RR41_RS13795 0.50 -1.2
2,885,015 - RR41_RS13795 0.50 +0.2
2,885,392 - RR41_RS13795 0.78 -0.8
2,886,028 + RR41_RS13800 0.28 +0.5
2,886,525 - RR41_RS13800 0.69 +0.2

Or see this region's nucleotide sequence