Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13785 and RR41_RS13790 are separated by 42 nucleotides RR41_RS13790 and RR41_RS13795 overlap by 4 nucleotides RR41_RS13795 and RR41_RS13800 are separated by 2 nucleotides
RR41_RS13785: RR41_RS13785 - MFS transporter, at 2,882,154 to 2,883,509
_RS13785
RR41_RS13790: RR41_RS13790 - 3-oxoadipate enol-lactonase, at 2,883,552 to 2,884,337
_RS13790
RR41_RS13795: RR41_RS13795 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,884,334 to 2,885,689
_RS13795
RR41_RS13800: RR41_RS13800 - 3-oxoadipyl-CoA thiolase, at 2,885,692 to 2,886,903
_RS13800
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2883.434 kb on + strand at 2883.653 kb on + strand, within RR41_RS13790 at 2883.901 kb on - strand, within RR41_RS13790 at 2884.143 kb on + strand, within RR41_RS13790 at 2884.144 kb on - strand, within RR41_RS13790 at 2884.175 kb on - strand, within RR41_RS13790 at 2884.395 kb on - strand at 2884.541 kb on + strand, within RR41_RS13795 at 2884.625 kb on - strand, within RR41_RS13795 at 2884.625 kb on - strand, within RR41_RS13795 at 2884.777 kb on + strand, within RR41_RS13795 at 2885.015 kb on - strand, within RR41_RS13795 at 2885.015 kb on - strand, within RR41_RS13795 at 2885.392 kb on - strand, within RR41_RS13795 at 2886.028 kb on + strand, within RR41_RS13800 at 2886.525 kb on - strand, within RR41_RS13800
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 2,883,434 + -1.8 2,883,653 + RR41_RS13790 0.13 +0.2 2,883,901 - RR41_RS13790 0.44 -2.4 2,884,143 + RR41_RS13790 0.75 -0.8 2,884,144 - RR41_RS13790 0.75 +0.2 2,884,175 - RR41_RS13790 0.79 +2.2 2,884,395 - -0.5 2,884,541 + RR41_RS13795 0.15 -1.4 2,884,625 - RR41_RS13795 0.21 -2.1 2,884,625 - RR41_RS13795 0.21 -0.8 2,884,777 + RR41_RS13795 0.33 +2.8 2,885,015 - RR41_RS13795 0.50 -1.2 2,885,015 - RR41_RS13795 0.50 +0.2 2,885,392 - RR41_RS13795 0.78 -0.8 2,886,028 + RR41_RS13800 0.28 +0.5 2,886,525 - RR41_RS13800 0.69 +0.2
Or see this region's nucleotide sequence