Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13060 and RR41_RS13065 are separated by 16 nucleotides
RR41_RS13060: RR41_RS13060 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,720,345 to 2,721,499
_RS13060
RR41_RS13065: RR41_RS13065 - dipeptidase, at 2,721,516 to 2,722,568
_RS13065
Position (kb)
2721
2722
2723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2720.612 kb on - strand, within RR41_RS13060 at 2720.612 kb on - strand, within RR41_RS13060 at 2720.630 kb on - strand, within RR41_RS13060 at 2720.641 kb on + strand, within RR41_RS13060 at 2720.684 kb on - strand, within RR41_RS13060 at 2720.780 kb on + strand, within RR41_RS13060 at 2720.781 kb on - strand, within RR41_RS13060 at 2720.781 kb on - strand, within RR41_RS13060 at 2720.971 kb on + strand, within RR41_RS13060 at 2721.184 kb on - strand, within RR41_RS13060 at 2721.306 kb on - strand, within RR41_RS13060 at 2721.306 kb on - strand, within RR41_RS13060 at 2721.306 kb on - strand, within RR41_RS13060 at 2721.308 kb on - strand, within RR41_RS13060 at 2721.309 kb on + strand, within RR41_RS13060 at 2721.497 kb on + strand at 2721.497 kb on + strand at 2721.559 kb on + strand at 2721.640 kb on + strand, within RR41_RS13065 at 2721.706 kb on - strand, within RR41_RS13065 at 2721.711 kb on - strand, within RR41_RS13065 at 2721.896 kb on + strand, within RR41_RS13065 at 2721.897 kb on - strand, within RR41_RS13065 at 2721.897 kb on - strand, within RR41_RS13065 at 2721.897 kb on - strand, within RR41_RS13065 at 2721.897 kb on - strand, within RR41_RS13065 at 2721.898 kb on + strand, within RR41_RS13065 at 2721.898 kb on + strand, within RR41_RS13065 at 2721.933 kb on - strand, within RR41_RS13065 at 2721.933 kb on - strand, within RR41_RS13065 at 2722.064 kb on + strand, within RR41_RS13065 at 2722.065 kb on - strand, within RR41_RS13065 at 2722.076 kb on + strand, within RR41_RS13065 at 2722.076 kb on + strand, within RR41_RS13065 at 2722.086 kb on - strand, within RR41_RS13065 at 2722.211 kb on - strand, within RR41_RS13065 at 2722.307 kb on + strand, within RR41_RS13065 at 2722.345 kb on + strand, within RR41_RS13065 at 2722.365 kb on + strand, within RR41_RS13065 at 2722.466 kb on - strand at 2722.686 kb on + strand at 2722.692 kb on + strand at 2722.698 kb on + strand at 2722.903 kb on - strand at 2722.947 kb on + strand at 2723.018 kb on - strand at 2723.020 kb on - strand at 2723.092 kb on + strand at 2723.167 kb on + strand at 2723.202 kb on - strand at 2723.347 kb on + strand at 2723.426 kb on - strand at 2723.441 kb on + strand at 2723.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 2,720,612 - RR41_RS13060 0.23 -1.3 2,720,612 - RR41_RS13060 0.23 +0.2 2,720,630 - RR41_RS13060 0.25 +0.2 2,720,641 + RR41_RS13060 0.26 +0.2 2,720,684 - RR41_RS13060 0.29 -0.8 2,720,780 + RR41_RS13060 0.38 +0.2 2,720,781 - RR41_RS13060 0.38 -1.8 2,720,781 - RR41_RS13060 0.38 -0.8 2,720,971 + RR41_RS13060 0.54 -1.3 2,721,184 - RR41_RS13060 0.73 -0.6 2,721,306 - RR41_RS13060 0.83 -0.8 2,721,306 - RR41_RS13060 0.83 +1.2 2,721,306 - RR41_RS13060 0.83 -1.2 2,721,308 - RR41_RS13060 0.83 +0.8 2,721,309 + RR41_RS13060 0.83 -1.3 2,721,497 + +0.7 2,721,497 + +0.2 2,721,559 + +0.5 2,721,640 + RR41_RS13065 0.12 +0.2 2,721,706 - RR41_RS13065 0.18 -2.8 2,721,711 - RR41_RS13065 0.19 -1.3 2,721,896 + RR41_RS13065 0.36 +2.8 2,721,897 - RR41_RS13065 0.36 -0.3 2,721,897 - RR41_RS13065 0.36 +0.2 2,721,897 - RR41_RS13065 0.36 -2.1 2,721,897 - RR41_RS13065 0.36 -1.3 2,721,898 + RR41_RS13065 0.36 +2.2 2,721,898 + RR41_RS13065 0.36 -1.3 2,721,933 - RR41_RS13065 0.40 -0.8 2,721,933 - RR41_RS13065 0.40 -2.1 2,722,064 + RR41_RS13065 0.52 -0.4 2,722,065 - RR41_RS13065 0.52 -2.3 2,722,076 + RR41_RS13065 0.53 -0.8 2,722,076 + RR41_RS13065 0.53 -1.3 2,722,086 - RR41_RS13065 0.54 -2.8 2,722,211 - RR41_RS13065 0.66 -1.3 2,722,307 + RR41_RS13065 0.75 -1.3 2,722,345 + RR41_RS13065 0.79 -1.3 2,722,365 + RR41_RS13065 0.81 +0.2 2,722,466 - +0.2 2,722,686 + -0.5 2,722,692 + +1.2 2,722,698 + -1.8 2,722,903 - -0.3 2,722,947 + -1.8 2,723,018 - -1.3 2,723,020 - +0.2 2,723,092 + -0.5 2,723,167 + +4.4 2,723,202 - +0.2 2,723,347 + +2.3 2,723,426 - -2.6 2,723,441 + +0.5 2,723,557 - -2.3
Or see this region's nucleotide sequence