Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13065

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13060 and RR41_RS13065 are separated by 16 nucleotides RR41_RS13060: RR41_RS13060 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,720,345 to 2,721,499 _RS13060 RR41_RS13065: RR41_RS13065 - dipeptidase, at 2,721,516 to 2,722,568 _RS13065 Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2720.612 kb on - strand, within RR41_RS13060at 2720.612 kb on - strand, within RR41_RS13060at 2720.630 kb on - strand, within RR41_RS13060at 2720.641 kb on + strand, within RR41_RS13060at 2720.684 kb on - strand, within RR41_RS13060at 2720.780 kb on + strand, within RR41_RS13060at 2720.781 kb on - strand, within RR41_RS13060at 2720.781 kb on - strand, within RR41_RS13060at 2720.971 kb on + strand, within RR41_RS13060at 2721.184 kb on - strand, within RR41_RS13060at 2721.306 kb on - strand, within RR41_RS13060at 2721.306 kb on - strand, within RR41_RS13060at 2721.306 kb on - strand, within RR41_RS13060at 2721.308 kb on - strand, within RR41_RS13060at 2721.309 kb on + strand, within RR41_RS13060at 2721.497 kb on + strandat 2721.497 kb on + strandat 2721.559 kb on + strandat 2721.640 kb on + strand, within RR41_RS13065at 2721.706 kb on - strand, within RR41_RS13065at 2721.711 kb on - strand, within RR41_RS13065at 2721.896 kb on + strand, within RR41_RS13065at 2721.897 kb on - strand, within RR41_RS13065at 2721.897 kb on - strand, within RR41_RS13065at 2721.897 kb on - strand, within RR41_RS13065at 2721.897 kb on - strand, within RR41_RS13065at 2721.898 kb on + strand, within RR41_RS13065at 2721.898 kb on + strand, within RR41_RS13065at 2721.933 kb on - strand, within RR41_RS13065at 2721.933 kb on - strand, within RR41_RS13065at 2722.064 kb on + strand, within RR41_RS13065at 2722.065 kb on - strand, within RR41_RS13065at 2722.076 kb on + strand, within RR41_RS13065at 2722.076 kb on + strand, within RR41_RS13065at 2722.086 kb on - strand, within RR41_RS13065at 2722.211 kb on - strand, within RR41_RS13065at 2722.307 kb on + strand, within RR41_RS13065at 2722.345 kb on + strand, within RR41_RS13065at 2722.365 kb on + strand, within RR41_RS13065at 2722.466 kb on - strandat 2722.686 kb on + strandat 2722.692 kb on + strandat 2722.698 kb on + strandat 2722.903 kb on - strandat 2722.947 kb on + strandat 2723.018 kb on - strandat 2723.020 kb on - strandat 2723.092 kb on + strandat 2723.167 kb on + strandat 2723.202 kb on - strandat 2723.347 kb on + strandat 2723.426 kb on - strandat 2723.441 kb on + strandat 2723.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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2,720,612 - RR41_RS13060 0.23 -1.3
2,720,612 - RR41_RS13060 0.23 +0.2
2,720,630 - RR41_RS13060 0.25 +0.2
2,720,641 + RR41_RS13060 0.26 +0.2
2,720,684 - RR41_RS13060 0.29 -0.8
2,720,780 + RR41_RS13060 0.38 +0.2
2,720,781 - RR41_RS13060 0.38 -1.8
2,720,781 - RR41_RS13060 0.38 -0.8
2,720,971 + RR41_RS13060 0.54 -1.3
2,721,184 - RR41_RS13060 0.73 -0.6
2,721,306 - RR41_RS13060 0.83 -0.8
2,721,306 - RR41_RS13060 0.83 +1.2
2,721,306 - RR41_RS13060 0.83 -1.2
2,721,308 - RR41_RS13060 0.83 +0.8
2,721,309 + RR41_RS13060 0.83 -1.3
2,721,497 + +0.7
2,721,497 + +0.2
2,721,559 + +0.5
2,721,640 + RR41_RS13065 0.12 +0.2
2,721,706 - RR41_RS13065 0.18 -2.8
2,721,711 - RR41_RS13065 0.19 -1.3
2,721,896 + RR41_RS13065 0.36 +2.8
2,721,897 - RR41_RS13065 0.36 -0.3
2,721,897 - RR41_RS13065 0.36 +0.2
2,721,897 - RR41_RS13065 0.36 -2.1
2,721,897 - RR41_RS13065 0.36 -1.3
2,721,898 + RR41_RS13065 0.36 +2.2
2,721,898 + RR41_RS13065 0.36 -1.3
2,721,933 - RR41_RS13065 0.40 -0.8
2,721,933 - RR41_RS13065 0.40 -2.1
2,722,064 + RR41_RS13065 0.52 -0.4
2,722,065 - RR41_RS13065 0.52 -2.3
2,722,076 + RR41_RS13065 0.53 -0.8
2,722,076 + RR41_RS13065 0.53 -1.3
2,722,086 - RR41_RS13065 0.54 -2.8
2,722,211 - RR41_RS13065 0.66 -1.3
2,722,307 + RR41_RS13065 0.75 -1.3
2,722,345 + RR41_RS13065 0.79 -1.3
2,722,365 + RR41_RS13065 0.81 +0.2
2,722,466 - +0.2
2,722,686 + -0.5
2,722,692 + +1.2
2,722,698 + -1.8
2,722,903 - -0.3
2,722,947 + -1.8
2,723,018 - -1.3
2,723,020 - +0.2
2,723,092 + -0.5
2,723,167 + +4.4
2,723,202 - +0.2
2,723,347 + +2.3
2,723,426 - -2.6
2,723,441 + +0.5
2,723,557 - -2.3

Or see this region's nucleotide sequence