Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04835 and RR41_RS04840 are separated by 70 nucleotides RR41_RS04840 and RR41_RS04845 are separated by 23 nucleotides RR41_RS04845 and RR41_RS04850 overlap by 29 nucleotides RR41_RS04850 and RR41_RS04855 are separated by 11 nucleotides
RR41_RS04835: RR41_RS04835 - translation elongation factor 4, at 998,521 to 1,000,338
_RS04835
RR41_RS04840: RR41_RS04840 - signal peptidase I, at 1,000,409 to 1,001,236
_RS04840
RR41_RS04845: RR41_RS04845 - DUF4845 domain-containing protein, at 1,001,260 to 1,001,634
_RS04845
RR41_RS04850: RR41_RS04850 - ribonuclease III, at 1,001,606 to 1,002,298
_RS04850
RR41_RS04855: RR41_RS04855 - GTPase Era, at 1,002,310 to 1,003,332
_RS04855
Position (kb) 1001
1002 Strain fitness (log2 ratio) -1
0
1 at 1000.313 kb on + strand at 1001.288 kb on - strand at 1001.359 kb on + strand, within RR41_RS04845 at 1001.359 kb on + strand, within RR41_RS04845 at 1001.359 kb on + strand, within RR41_RS04845 at 1001.359 kb on + strand, within RR41_RS04845 at 1001.400 kb on + strand, within RR41_RS04845 at 1001.400 kb on + strand, within RR41_RS04845 at 1001.545 kb on + strand, within RR41_RS04845
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 1,000,313 + +0.5 1,001,288 - -1.3 1,001,359 + RR41_RS04845 0.26 +1.3 1,001,359 + RR41_RS04845 0.26 -1.5 1,001,359 + RR41_RS04845 0.26 +0.3 1,001,359 + RR41_RS04845 0.26 -1.7 1,001,400 + RR41_RS04845 0.37 -1.3 1,001,400 + RR41_RS04845 0.37 -0.7 1,001,545 + RR41_RS04845 0.76 -1.1
Or see this region's nucleotide sequence