Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS04665

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS04660 and RR41_RS04665 are separated by 3 nucleotidesRR41_RS04665 and RR41_RS04670 overlap by 1 nucleotidesRR41_RS04670 and RR41_RS04675 are separated by 23 nucleotides RR41_RS04660: RR41_RS04660 - cell envelope integrity protein TolA, at 964,354 to 965,700 _RS04660 RR41_RS04665: RR41_RS04665 - protein TolR, at 965,704 to 966,156 _RS04665 RR41_RS04670: RR41_RS04670 - protein TolQ, at 966,156 to 966,854 _RS04670 RR41_RS04675: RR41_RS04675 - tol-pal system-associated acyl-CoA thioesterase, at 966,878 to 967,285 _RS04675 Position (kb) 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 964.714 kb on - strand, within RR41_RS04660at 964.714 kb on - strand, within RR41_RS04660at 964.884 kb on + strand, within RR41_RS04660at 964.885 kb on - strand, within RR41_RS04660at 964.977 kb on + strand, within RR41_RS04660at 964.978 kb on - strand, within RR41_RS04660at 965.035 kb on - strand, within RR41_RS04660at 965.082 kb on + strand, within RR41_RS04660at 965.288 kb on - strand, within RR41_RS04660at 965.314 kb on + strand, within RR41_RS04660at 965.337 kb on + strand, within RR41_RS04660at 965.470 kb on + strand, within RR41_RS04660at 965.471 kb on - strand, within RR41_RS04660at 965.471 kb on - strand, within RR41_RS04660at 965.498 kb on - strand, within RR41_RS04660at 965.537 kb on - strand, within RR41_RS04660at 965.551 kb on - strand, within RR41_RS04660at 965.659 kb on + strandat 965.674 kb on - strandat 965.694 kb on + strandat 965.705 kb on + strandat 965.706 kb on - strandat 965.756 kb on - strand, within RR41_RS04665at 965.773 kb on + strand, within RR41_RS04665at 965.800 kb on - strand, within RR41_RS04665at 965.820 kb on + strand, within RR41_RS04665at 965.901 kb on + strand, within RR41_RS04665at 965.909 kb on + strand, within RR41_RS04665at 965.918 kb on + strand, within RR41_RS04665at 965.918 kb on + strand, within RR41_RS04665at 965.927 kb on + strand, within RR41_RS04665at 965.928 kb on - strand, within RR41_RS04665at 965.931 kb on + strand, within RR41_RS04665at 965.991 kb on + strand, within RR41_RS04665at 965.991 kb on + strand, within RR41_RS04665at 966.015 kb on + strand, within RR41_RS04665at 966.074 kb on - strand, within RR41_RS04665at 966.084 kb on - strand, within RR41_RS04665at 966.300 kb on + strand, within RR41_RS04670at 966.430 kb on + strand, within RR41_RS04670at 966.431 kb on - strand, within RR41_RS04670at 966.431 kb on - strand, within RR41_RS04670at 966.465 kb on + strand, within RR41_RS04670at 966.472 kb on + strand, within RR41_RS04670at 966.511 kb on - strand, within RR41_RS04670at 966.515 kb on + strand, within RR41_RS04670at 966.545 kb on + strand, within RR41_RS04670at 966.545 kb on + strand, within RR41_RS04670at 966.546 kb on - strand, within RR41_RS04670at 966.582 kb on + strand, within RR41_RS04670at 966.583 kb on - strand, within RR41_RS04670at 966.583 kb on - strand, within RR41_RS04670at 966.650 kb on + strand, within RR41_RS04670at 966.650 kb on + strand, within RR41_RS04670at 966.651 kb on - strand, within RR41_RS04670at 966.714 kb on - strand, within RR41_RS04670at 966.723 kb on - strand, within RR41_RS04670at 966.723 kb on - strand, within RR41_RS04670at 966.723 kb on - strand, within RR41_RS04670at 966.723 kb on - strand, within RR41_RS04670at 966.723 kb on - strand, within RR41_RS04670at 966.763 kb on - strand, within RR41_RS04670at 966.808 kb on - strandat 966.808 kb on - strandat 966.854 kb on + strandat 966.855 kb on - strandat 966.855 kb on - strandat 966.855 kb on - strandat 966.858 kb on + strandat 966.858 kb on + strandat 966.858 kb on + strandat 966.858 kb on + strandat 966.858 kb on + strandat 966.858 kb on + strandat 966.859 kb on - strandat 966.859 kb on - strandat 966.859 kb on - strandat 966.859 kb on - strandat 966.862 kb on + strandat 966.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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964,714 - RR41_RS04660 0.27 -1.3
964,714 - RR41_RS04660 0.27 -1.7
964,884 + RR41_RS04660 0.39 -1.9
964,885 - RR41_RS04660 0.39 -0.7
964,977 + RR41_RS04660 0.46 -1.3
964,978 - RR41_RS04660 0.46 -2.7
965,035 - RR41_RS04660 0.51 +0.3
965,082 + RR41_RS04660 0.54 +0.3
965,288 - RR41_RS04660 0.69 -1.3
965,314 + RR41_RS04660 0.71 -0.2
965,337 + RR41_RS04660 0.73 -0.7
965,470 + RR41_RS04660 0.83 +0.3
965,471 - RR41_RS04660 0.83 -2.7
965,471 - RR41_RS04660 0.83 -3.3
965,498 - RR41_RS04660 0.85 -1.7
965,537 - RR41_RS04660 0.88 -2.2
965,551 - RR41_RS04660 0.89 -2.6
965,659 + -0.7
965,674 - -3.2
965,694 + -0.7
965,705 + -0.5
965,706 - -2.3
965,756 - RR41_RS04665 0.11 -2.7
965,773 + RR41_RS04665 0.15 -0.7
965,800 - RR41_RS04665 0.21 -0.7
965,820 + RR41_RS04665 0.26 +1.3
965,901 + RR41_RS04665 0.43 -1.7
965,909 + RR41_RS04665 0.45 -0.5
965,918 + RR41_RS04665 0.47 +0.3
965,918 + RR41_RS04665 0.47 -0.7
965,927 + RR41_RS04665 0.49 -2.1
965,928 - RR41_RS04665 0.49 -1.3
965,931 + RR41_RS04665 0.50 +0.3
965,991 + RR41_RS04665 0.63 -0.7
965,991 + RR41_RS04665 0.63 -0.7
966,015 + RR41_RS04665 0.69 -3.3
966,074 - RR41_RS04665 0.82 -0.7
966,084 - RR41_RS04665 0.84 -2.3
966,300 + RR41_RS04670 0.21 +1.3
966,430 + RR41_RS04670 0.39 -1.7
966,431 - RR41_RS04670 0.39 -0.7
966,431 - RR41_RS04670 0.39 -1.7
966,465 + RR41_RS04670 0.44 -1.3
966,472 + RR41_RS04670 0.45 -0.7
966,511 - RR41_RS04670 0.51 -3.2
966,515 + RR41_RS04670 0.51 -0.1
966,545 + RR41_RS04670 0.56 -1.3
966,545 + RR41_RS04670 0.56 -0.7
966,546 - RR41_RS04670 0.56 -0.7
966,582 + RR41_RS04670 0.61 +0.3
966,583 - RR41_RS04670 0.61 -2.3
966,583 - RR41_RS04670 0.61 -2.3
966,650 + RR41_RS04670 0.71 -2.3
966,650 + RR41_RS04670 0.71 +0.3
966,651 - RR41_RS04670 0.71 +0.3
966,714 - RR41_RS04670 0.80 -0.1
966,723 - RR41_RS04670 0.81 -2.7
966,723 - RR41_RS04670 0.81 +1.8
966,723 - RR41_RS04670 0.81 +0.3
966,723 - RR41_RS04670 0.81 -2.6
966,723 - RR41_RS04670 0.81 -0.5
966,763 - RR41_RS04670 0.87 -1.7
966,808 - -0.8
966,808 - -1.1
966,854 + +0.7
966,855 - -0.7
966,855 - -0.7
966,855 - -0.7
966,858 + +1.8
966,858 + -0.7
966,858 + -1.1
966,858 + +1.3
966,858 + +0.8
966,858 + -0.7
966,859 - -0.7
966,859 - +1.3
966,859 - -0.7
966,859 - +1.5
966,862 + -3.1
966,863 - -2.6

Or see this region's nucleotide sequence