Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS04490

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS04485 and RR41_RS04490 are separated by 9 nucleotidesRR41_RS04490 and RR41_RS04495 overlap by 1 nucleotidesRR41_RS04495 and RR41_RS04500 overlap by 4 nucleotides RR41_RS04485: RR41_RS04485 - glycosyltransferase family 39 protein, at 926,851 to 928,497 _RS04485 RR41_RS04490: RR41_RS04490 - GtrA family protein, at 928,507 to 928,887 _RS04490 RR41_RS04495: RR41_RS04495 - glycosyltransferase family 2 protein, at 928,887 to 929,867 _RS04495 RR41_RS04500: RR41_RS04500 - ChbG/HpnK family deacetylase, at 929,864 to 930,658 _RS04500 Position (kb) 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 927.565 kb on + strand, within RR41_RS04485at 927.571 kb on - strand, within RR41_RS04485at 927.571 kb on - strand, within RR41_RS04485at 927.645 kb on + strand, within RR41_RS04485at 927.668 kb on - strand, within RR41_RS04485at 927.675 kb on + strand, within RR41_RS04485at 927.682 kb on - strand, within RR41_RS04485at 927.750 kb on + strand, within RR41_RS04485at 927.754 kb on - strand, within RR41_RS04485at 927.822 kb on + strand, within RR41_RS04485at 927.830 kb on - strand, within RR41_RS04485at 927.832 kb on + strand, within RR41_RS04485at 927.833 kb on - strand, within RR41_RS04485at 927.934 kb on + strand, within RR41_RS04485at 927.935 kb on - strand, within RR41_RS04485at 927.956 kb on - strand, within RR41_RS04485at 928.005 kb on - strand, within RR41_RS04485at 928.010 kb on - strand, within RR41_RS04485at 928.057 kb on + strand, within RR41_RS04485at 928.058 kb on - strand, within RR41_RS04485at 928.090 kb on + strand, within RR41_RS04485at 928.091 kb on - strand, within RR41_RS04485at 928.114 kb on - strand, within RR41_RS04485at 928.146 kb on + strand, within RR41_RS04485at 928.147 kb on - strand, within RR41_RS04485at 928.180 kb on - strand, within RR41_RS04485at 928.241 kb on - strand, within RR41_RS04485at 928.255 kb on + strand, within RR41_RS04485at 928.256 kb on - strand, within RR41_RS04485at 928.278 kb on + strand, within RR41_RS04485at 928.300 kb on + strand, within RR41_RS04485at 928.301 kb on - strand, within RR41_RS04485at 928.315 kb on - strand, within RR41_RS04485at 928.315 kb on - strand, within RR41_RS04485at 928.414 kb on + strandat 928.415 kb on - strandat 928.441 kb on + strandat 928.459 kb on + strandat 928.480 kb on - strandat 928.497 kb on + strandat 928.498 kb on - strandat 928.498 kb on - strandat 928.501 kb on + strandat 928.502 kb on - strandat 928.502 kb on - strandat 928.579 kb on + strand, within RR41_RS04490at 928.594 kb on + strand, within RR41_RS04490at 928.619 kb on - strand, within RR41_RS04490at 928.693 kb on - strand, within RR41_RS04490at 928.693 kb on - strand, within RR41_RS04490at 928.734 kb on - strand, within RR41_RS04490at 928.765 kb on + strand, within RR41_RS04490at 928.765 kb on + strand, within RR41_RS04490at 928.813 kb on + strand, within RR41_RS04490at 928.813 kb on + strand, within RR41_RS04490at 928.818 kb on + strand, within RR41_RS04490at 928.818 kb on + strand, within RR41_RS04490at 928.819 kb on - strand, within RR41_RS04490at 928.819 kb on - strand, within RR41_RS04490at 928.819 kb on - strand, within RR41_RS04490at 928.819 kb on - strand, within RR41_RS04490at 928.820 kb on + strand, within RR41_RS04490at 928.821 kb on - strand, within RR41_RS04490at 928.854 kb on + strandat 928.876 kb on - strandat 928.937 kb on + strandat 928.937 kb on + strandat 928.938 kb on - strandat 928.938 kb on - strandat 928.941 kb on - strandat 928.962 kb on - strandat 928.967 kb on - strandat 929.009 kb on - strand, within RR41_RS04495at 929.050 kb on - strand, within RR41_RS04495at 929.052 kb on + strand, within RR41_RS04495at 929.053 kb on - strand, within RR41_RS04495at 929.060 kb on + strand, within RR41_RS04495at 929.061 kb on - strand, within RR41_RS04495at 929.148 kb on + strand, within RR41_RS04495at 929.166 kb on + strand, within RR41_RS04495at 929.167 kb on - strand, within RR41_RS04495at 929.175 kb on - strand, within RR41_RS04495at 929.179 kb on - strand, within RR41_RS04495at 929.321 kb on - strand, within RR41_RS04495at 929.321 kb on - strand, within RR41_RS04495at 929.323 kb on - strand, within RR41_RS04495at 929.334 kb on - strand, within RR41_RS04495at 929.334 kb on - strand, within RR41_RS04495at 929.334 kb on - strand, within RR41_RS04495at 929.418 kb on - strand, within RR41_RS04495at 929.493 kb on - strand, within RR41_RS04495at 929.509 kb on + strand, within RR41_RS04495at 929.509 kb on + strand, within RR41_RS04495at 929.510 kb on - strand, within RR41_RS04495at 929.510 kb on - strand, within RR41_RS04495at 929.540 kb on + strand, within RR41_RS04495at 929.540 kb on + strand, within RR41_RS04495at 929.619 kb on + strand, within RR41_RS04495at 929.619 kb on + strand, within RR41_RS04495at 929.632 kb on - strand, within RR41_RS04495at 929.632 kb on - strand, within RR41_RS04495at 929.677 kb on - strand, within RR41_RS04495at 929.726 kb on + strand, within RR41_RS04495at 929.727 kb on - strand, within RR41_RS04495at 929.798 kb on + strandat 929.809 kb on - strandat 929.848 kb on - strandat 929.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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927,565 + RR41_RS04485 0.43 -1.0
927,571 - RR41_RS04485 0.44 +1.4
927,571 - RR41_RS04485 0.44 +1.1
927,645 + RR41_RS04485 0.48 -2.1
927,668 - RR41_RS04485 0.50 +0.2
927,675 + RR41_RS04485 0.50 +0.7
927,682 - RR41_RS04485 0.50 -0.2
927,750 + RR41_RS04485 0.55 -1.4
927,754 - RR41_RS04485 0.55 -2.6
927,822 + RR41_RS04485 0.59 -0.2
927,830 - RR41_RS04485 0.59 -0.8
927,832 + RR41_RS04485 0.60 +0.8
927,833 - RR41_RS04485 0.60 -2.1
927,934 + RR41_RS04485 0.66 +1.0
927,935 - RR41_RS04485 0.66 -0.5
927,956 - RR41_RS04485 0.67 +0.2
928,005 - RR41_RS04485 0.70 -2.1
928,010 - RR41_RS04485 0.70 +0.9
928,057 + RR41_RS04485 0.73 +0.7
928,058 - RR41_RS04485 0.73 +0.5
928,090 + RR41_RS04485 0.75 -1.0
928,091 - RR41_RS04485 0.75 +1.8
928,114 - RR41_RS04485 0.77 +0.0
928,146 + RR41_RS04485 0.79 +0.8
928,147 - RR41_RS04485 0.79 +1.2
928,180 - RR41_RS04485 0.81 -0.2
928,241 - RR41_RS04485 0.84 -0.2
928,255 + RR41_RS04485 0.85 +0.2
928,256 - RR41_RS04485 0.85 -2.6
928,278 + RR41_RS04485 0.87 -0.8
928,300 + RR41_RS04485 0.88 +0.2
928,301 - RR41_RS04485 0.88 -2.4
928,315 - RR41_RS04485 0.89 -0.4
928,315 - RR41_RS04485 0.89 -0.8
928,414 + +2.2
928,415 - +0.2
928,441 + -0.8
928,459 + +0.0
928,480 - +1.8
928,497 + -1.4
928,498 - +1.2
928,498 - +0.8
928,501 + +0.2
928,502 - -0.5
928,502 - -1.8
928,579 + RR41_RS04490 0.19 -1.6
928,594 + RR41_RS04490 0.23 +0.6
928,619 - RR41_RS04490 0.29 +2.2
928,693 - RR41_RS04490 0.49 +0.2
928,693 - RR41_RS04490 0.49 -1.5
928,734 - RR41_RS04490 0.60 -0.5
928,765 + RR41_RS04490 0.68 -3.1
928,765 + RR41_RS04490 0.68 -1.8
928,813 + RR41_RS04490 0.80 -0.8
928,813 + RR41_RS04490 0.80 -0.8
928,818 + RR41_RS04490 0.82 -2.1
928,818 + RR41_RS04490 0.82 -2.1
928,819 - RR41_RS04490 0.82 -0.8
928,819 - RR41_RS04490 0.82 -1.4
928,819 - RR41_RS04490 0.82 -3.1
928,819 - RR41_RS04490 0.82 -0.8
928,820 + RR41_RS04490 0.82 +0.2
928,821 - RR41_RS04490 0.82 -0.2
928,854 + -0.4
928,876 - -0.4
928,937 + -1.8
928,937 + -1.4
928,938 - -0.8
928,938 - -2.8
928,941 - +1.8
928,962 - -2.2
928,967 - +0.2
929,009 - RR41_RS04495 0.12 +0.7
929,050 - RR41_RS04495 0.17 +1.2
929,052 + RR41_RS04495 0.17 +0.2
929,053 - RR41_RS04495 0.17 -2.6
929,060 + RR41_RS04495 0.18 -0.8
929,061 - RR41_RS04495 0.18 -3.0
929,148 + RR41_RS04495 0.27 -1.4
929,166 + RR41_RS04495 0.28 -1.3
929,167 - RR41_RS04495 0.29 -2.1
929,175 - RR41_RS04495 0.29 -1.2
929,179 - RR41_RS04495 0.30 +1.5
929,321 - RR41_RS04495 0.44 -2.6
929,321 - RR41_RS04495 0.44 +1.8
929,323 - RR41_RS04495 0.44 +1.2
929,334 - RR41_RS04495 0.46 -1.4
929,334 - RR41_RS04495 0.46 +0.7
929,334 - RR41_RS04495 0.46 -0.8
929,418 - RR41_RS04495 0.54 -0.2
929,493 - RR41_RS04495 0.62 +1.2
929,509 + RR41_RS04495 0.63 +0.2
929,509 + RR41_RS04495 0.63 +0.2
929,510 - RR41_RS04495 0.64 +1.6
929,510 - RR41_RS04495 0.64 +0.2
929,540 + RR41_RS04495 0.67 -2.1
929,540 + RR41_RS04495 0.67 +0.5
929,619 + RR41_RS04495 0.75 +1.2
929,619 + RR41_RS04495 0.75 -0.8
929,632 - RR41_RS04495 0.76 +0.2
929,632 - RR41_RS04495 0.76 +2.2
929,677 - RR41_RS04495 0.81 -0.4
929,726 + RR41_RS04495 0.86 +0.2
929,727 - RR41_RS04495 0.86 +0.7
929,798 + -0.3
929,809 - -0.8
929,848 - +0.2
929,859 + +3.0

Or see this region's nucleotide sequence