Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS04140

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS04130 and RR41_RS04135 are separated by 121 nucleotidesRR41_RS04135 and RR41_RS04140 are separated by 112 nucleotidesRR41_RS04140 and RR41_RS04145 are separated by 140 nucleotidesRR41_RS04145 and RR41_RS04150 are separated by 34 nucleotides RR41_RS04130: RR41_RS04130 - universal stress protein, at 847,606 to 848,043 _RS04130 RR41_RS04135: RR41_RS04135 - CatB-related O-acetyltransferase, at 848,165 to 848,797 _RS04135 RR41_RS04140: RR41_RS04140 - RidA family protein, at 848,910 to 849,302 _RS04140 RR41_RS04145: RR41_RS04145 - TetR/AcrR family transcriptional regulator, at 849,443 to 850,076 _RS04145 RR41_RS04150: RR41_RS04150 - transcription elongation factor GreA, at 850,111 to 850,587 _RS04150 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2 3at 847.926 kb on + strand, within RR41_RS04130at 847.926 kb on + strand, within RR41_RS04130at 847.933 kb on + strand, within RR41_RS04130at 847.996 kb on - strand, within RR41_RS04130at 847.996 kb on - strand, within RR41_RS04130at 848.037 kb on - strandat 848.039 kb on - strandat 848.071 kb on + strandat 848.083 kb on - strandat 848.089 kb on + strandat 848.089 kb on + strandat 848.101 kb on + strandat 848.159 kb on + strandat 848.161 kb on + strandat 848.162 kb on - strandat 848.162 kb on - strandat 848.166 kb on + strandat 848.207 kb on + strandat 848.207 kb on + strandat 848.207 kb on + strandat 848.207 kb on + strandat 848.207 kb on + strandat 848.207 kb on + strandat 848.208 kb on - strandat 848.208 kb on - strandat 848.208 kb on - strandat 848.208 kb on - strandat 848.210 kb on - strandat 848.223 kb on - strandat 848.313 kb on + strand, within RR41_RS04135at 848.317 kb on + strand, within RR41_RS04135at 848.468 kb on - strand, within RR41_RS04135at 848.587 kb on + strand, within RR41_RS04135at 848.595 kb on + strand, within RR41_RS04135at 848.595 kb on + strand, within RR41_RS04135at 848.596 kb on - strand, within RR41_RS04135at 848.624 kb on - strand, within RR41_RS04135at 848.639 kb on + strand, within RR41_RS04135at 848.639 kb on + strand, within RR41_RS04135at 848.640 kb on - strand, within RR41_RS04135at 848.652 kb on - strand, within RR41_RS04135at 848.692 kb on - strand, within RR41_RS04135at 848.692 kb on - strand, within RR41_RS04135at 848.697 kb on + strand, within RR41_RS04135at 848.697 kb on + strand, within RR41_RS04135at 848.697 kb on + strand, within RR41_RS04135at 848.708 kb on - strand, within RR41_RS04135at 848.708 kb on - strand, within RR41_RS04135at 848.710 kb on + strand, within RR41_RS04135at 848.784 kb on - strandat 848.822 kb on - strandat 848.829 kb on + strandat 848.887 kb on - strandat 848.889 kb on + strandat 848.890 kb on - strandat 848.902 kb on - strandat 848.911 kb on + strandat 848.915 kb on + strandat 848.915 kb on + strandat 848.915 kb on + strandat 848.927 kb on + strandat 848.927 kb on + strandat 849.035 kb on + strand, within RR41_RS04140at 849.089 kb on + strand, within RR41_RS04140at 849.130 kb on - strand, within RR41_RS04140at 849.138 kb on - strand, within RR41_RS04140at 849.195 kb on - strand, within RR41_RS04140at 849.219 kb on + strand, within RR41_RS04140at 849.263 kb on - strandat 849.263 kb on - strandat 849.264 kb on + strandat 849.264 kb on + strandat 849.326 kb on + strandat 849.440 kb on + strandat 849.440 kb on + strandat 849.440 kb on + strandat 849.440 kb on + strandat 849.441 kb on - strandat 849.441 kb on - strandat 849.532 kb on + strand, within RR41_RS04145at 849.545 kb on - strand, within RR41_RS04145at 849.584 kb on + strand, within RR41_RS04145at 849.703 kb on - strand, within RR41_RS04145at 849.705 kb on + strand, within RR41_RS04145at 849.722 kb on + strand, within RR41_RS04145at 849.722 kb on + strand, within RR41_RS04145at 849.723 kb on - strand, within RR41_RS04145at 849.724 kb on + strand, within RR41_RS04145at 849.725 kb on - strand, within RR41_RS04145at 849.726 kb on + strand, within RR41_RS04145at 849.727 kb on - strand, within RR41_RS04145at 849.727 kb on - strand, within RR41_RS04145at 849.818 kb on - strand, within RR41_RS04145at 849.855 kb on + strand, within RR41_RS04145at 849.856 kb on - strand, within RR41_RS04145at 849.984 kb on + strand, within RR41_RS04145at 850.086 kb on + strandat 850.086 kb on + strandat 850.091 kb on + strandat 850.095 kb on + strandat 850.095 kb on + strandat 850.096 kb on - strandat 850.098 kb on - strandat 850.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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847,926 + RR41_RS04130 0.73 -1.4
847,926 + RR41_RS04130 0.73 -1.4
847,933 + RR41_RS04130 0.75 -1.4
847,996 - RR41_RS04130 0.89 +0.1
847,996 - RR41_RS04130 0.89 -0.2
848,037 - +0.7
848,039 - +1.5
848,071 + -2.4
848,083 - -0.4
848,089 + -0.3
848,089 + -0.9
848,101 + -0.6
848,159 + -0.8
848,161 + +3.3
848,162 - +1.0
848,162 - -2.1
848,166 + -2.2
848,207 + +0.2
848,207 + -1.3
848,207 + -1.8
848,207 + -2.4
848,207 + -2.4
848,207 + -0.8
848,208 - -1.3
848,208 - +1.7
848,208 - +0.2
848,208 - +1.5
848,210 - -1.6
848,223 - +0.2
848,313 + RR41_RS04135 0.23 +0.2
848,317 + RR41_RS04135 0.24 -0.8
848,468 - RR41_RS04135 0.48 -2.2
848,587 + RR41_RS04135 0.67 +0.7
848,595 + RR41_RS04135 0.68 +1.7
848,595 + RR41_RS04135 0.68 +0.4
848,596 - RR41_RS04135 0.68 -0.5
848,624 - RR41_RS04135 0.73 +3.0
848,639 + RR41_RS04135 0.75 -0.8
848,639 + RR41_RS04135 0.75 +0.2
848,640 - RR41_RS04135 0.75 -1.8
848,652 - RR41_RS04135 0.77 +0.6
848,692 - RR41_RS04135 0.83 -0.8
848,692 - RR41_RS04135 0.83 -1.4
848,697 + RR41_RS04135 0.84 +0.2
848,697 + RR41_RS04135 0.84 +0.7
848,697 + RR41_RS04135 0.84 -1.5
848,708 - RR41_RS04135 0.86 +1.2
848,708 - RR41_RS04135 0.86 +0.6
848,710 + RR41_RS04135 0.86 -1.3
848,784 - +0.2
848,822 - -1.4
848,829 + -0.3
848,887 - -0.1
848,889 + -2.4
848,890 - +0.7
848,902 - +1.6
848,911 + +0.2
848,915 + +0.2
848,915 + +0.2
848,915 + +1.1
848,927 + +0.2
848,927 + -0.8
849,035 + RR41_RS04140 0.32 -1.3
849,089 + RR41_RS04140 0.46 -0.8
849,130 - RR41_RS04140 0.56 -1.8
849,138 - RR41_RS04140 0.58 -1.1
849,195 - RR41_RS04140 0.73 -2.6
849,219 + RR41_RS04140 0.79 -0.8
849,263 - -1.0
849,263 - +2.7
849,264 + +0.2
849,264 + -0.4
849,326 + -0.1
849,440 + -0.8
849,440 + +0.2
849,440 + -1.8
849,440 + -1.8
849,441 - +0.2
849,441 - -0.8
849,532 + RR41_RS04145 0.14 -0.3
849,545 - RR41_RS04145 0.16 -0.2
849,584 + RR41_RS04145 0.22 -0.6
849,703 - RR41_RS04145 0.41 +0.6
849,705 + RR41_RS04145 0.41 +1.6
849,722 + RR41_RS04145 0.44 +0.2
849,722 + RR41_RS04145 0.44 +0.2
849,723 - RR41_RS04145 0.44 +2.5
849,724 + RR41_RS04145 0.44 -1.4
849,725 - RR41_RS04145 0.44 +0.2
849,726 + RR41_RS04145 0.45 -2.2
849,727 - RR41_RS04145 0.45 +2.5
849,727 - RR41_RS04145 0.45 -2.4
849,818 - RR41_RS04145 0.59 +0.4
849,855 + RR41_RS04145 0.65 -0.1
849,856 - RR41_RS04145 0.65 -0.8
849,984 + RR41_RS04145 0.85 +0.7
850,086 + +0.2
850,086 + +0.6
850,091 + +1.6
850,095 + -0.8
850,095 + -1.4
850,096 - -1.6
850,098 - -1.1
850,116 + +1.8

Or see this region's nucleotide sequence