Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS03655 and RR41_RS03660 are separated by 355 nucleotides RR41_RS03660 and RR41_RS03665 are separated by 158 nucleotides
RR41_RS03655: RR41_RS03655 - PaaX family transcriptional regulator, at 751,211 to 752,011
_RS03655
RR41_RS03660: RR41_RS03660 - undecaprenyl-diphosphate phosphatase, at 752,367 to 753,185
_RS03660
RR41_RS03665: RR41_RS03665 - AraC family transcriptional regulator, at 753,344 to 754,237
_RS03665
Position (kb) 752
753
754 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 751.416 kb on + strand, within RR41_RS03655 at 751.435 kb on + strand, within RR41_RS03655 at 751.436 kb on - strand, within RR41_RS03655 at 751.439 kb on - strand, within RR41_RS03655 at 751.449 kb on + strand, within RR41_RS03655 at 751.450 kb on - strand, within RR41_RS03655 at 751.450 kb on - strand, within RR41_RS03655 at 751.565 kb on + strand, within RR41_RS03655 at 751.597 kb on + strand, within RR41_RS03655 at 751.600 kb on - strand, within RR41_RS03655 at 751.600 kb on - strand, within RR41_RS03655 at 751.600 kb on - strand, within RR41_RS03655 at 751.605 kb on - strand, within RR41_RS03655 at 751.621 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.623 kb on + strand, within RR41_RS03655 at 751.624 kb on - strand, within RR41_RS03655 at 751.624 kb on - strand, within RR41_RS03655 at 751.624 kb on - strand, within RR41_RS03655 at 751.627 kb on + strand, within RR41_RS03655 at 751.628 kb on - strand, within RR41_RS03655 at 751.698 kb on - strand, within RR41_RS03655 at 751.698 kb on - strand, within RR41_RS03655 at 751.700 kb on - strand, within RR41_RS03655 at 751.700 kb on - strand, within RR41_RS03655 at 751.731 kb on + strand, within RR41_RS03655 at 751.750 kb on + strand, within RR41_RS03655 at 751.751 kb on - strand, within RR41_RS03655 at 751.751 kb on - strand, within RR41_RS03655 at 751.751 kb on - strand, within RR41_RS03655 at 751.835 kb on + strand, within RR41_RS03655 at 751.835 kb on + strand, within RR41_RS03655 at 751.885 kb on + strand, within RR41_RS03655 at 751.975 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.979 kb on - strand at 752.038 kb on + strand at 752.043 kb on - strand at 752.043 kb on - strand at 752.051 kb on + strand at 752.055 kb on - strand at 752.055 kb on - strand at 752.107 kb on - strand at 752.119 kb on + strand at 752.120 kb on - strand at 752.121 kb on + strand at 752.171 kb on - strand at 752.179 kb on + strand at 752.180 kb on - strand at 752.202 kb on - strand at 752.217 kb on - strand at 752.220 kb on + strand at 752.258 kb on - strand at 752.295 kb on - strand at 752.343 kb on + strand at 752.386 kb on + strand at 752.387 kb on - strand at 752.387 kb on - strand at 752.471 kb on + strand, within RR41_RS03660 at 752.472 kb on - strand, within RR41_RS03660 at 752.472 kb on - strand, within RR41_RS03660 at 752.513 kb on - strand, within RR41_RS03660 at 752.513 kb on - strand, within RR41_RS03660 at 752.525 kb on - strand, within RR41_RS03660 at 752.551 kb on + strand, within RR41_RS03660 at 752.551 kb on + strand, within RR41_RS03660 at 752.575 kb on + strand, within RR41_RS03660 at 752.632 kb on + strand, within RR41_RS03660 at 752.633 kb on - strand, within RR41_RS03660 at 752.633 kb on - strand, within RR41_RS03660 at 752.658 kb on - strand, within RR41_RS03660 at 752.668 kb on + strand, within RR41_RS03660 at 752.710 kb on + strand, within RR41_RS03660 at 752.710 kb on + strand, within RR41_RS03660 at 752.710 kb on + strand, within RR41_RS03660 at 752.762 kb on + strand, within RR41_RS03660 at 752.763 kb on - strand, within RR41_RS03660 at 752.822 kb on - strand, within RR41_RS03660 at 752.822 kb on - strand, within RR41_RS03660 at 752.884 kb on + strand, within RR41_RS03660 at 752.884 kb on + strand, within RR41_RS03660 at 752.885 kb on - strand, within RR41_RS03660 at 752.959 kb on + strand, within RR41_RS03660 at 752.959 kb on + strand, within RR41_RS03660 at 752.959 kb on + strand, within RR41_RS03660 at 752.959 kb on + strand, within RR41_RS03660 at 753.014 kb on + strand, within RR41_RS03660 at 753.014 kb on + strand, within RR41_RS03660 at 753.023 kb on + strand, within RR41_RS03660 at 753.050 kb on + strand, within RR41_RS03660 at 753.051 kb on - strand, within RR41_RS03660 at 753.062 kb on - strand, within RR41_RS03660 at 753.101 kb on + strand, within RR41_RS03660 at 753.101 kb on + strand, within RR41_RS03660 at 753.101 kb on + strand, within RR41_RS03660 at 753.101 kb on + strand, within RR41_RS03660 at 753.102 kb on - strand, within RR41_RS03660 at 753.106 kb on + strand at 753.112 kb on + strand at 753.113 kb on - strand at 753.113 kb on - strand at 753.133 kb on + strand at 753.136 kb on + strand at 753.136 kb on + strand at 753.161 kb on + strand at 753.161 kb on + strand at 753.161 kb on + strand at 753.171 kb on - strand at 753.183 kb on + strand at 753.184 kb on - strand at 753.248 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.269 kb on + strand at 753.269 kb on + strand at 753.270 kb on - strand at 753.270 kb on - strand at 753.296 kb on - strand at 753.307 kb on + strand at 753.310 kb on - strand at 753.310 kb on - strand at 753.310 kb on - strand at 753.313 kb on - strand at 753.319 kb on + strand at 753.323 kb on + strand at 753.390 kb on - strand at 753.411 kb on + strand at 753.412 kb on - strand at 753.424 kb on + strand at 753.425 kb on - strand at 753.450 kb on + strand, within RR41_RS03665 at 753.477 kb on + strand, within RR41_RS03665 at 753.477 kb on + strand, within RR41_RS03665 at 753.477 kb on + strand, within RR41_RS03665 at 753.477 kb on + strand, within RR41_RS03665 at 753.527 kb on + strand, within RR41_RS03665 at 753.527 kb on + strand, within RR41_RS03665 at 753.527 kb on + strand, within RR41_RS03665 at 753.527 kb on + strand, within RR41_RS03665 at 753.527 kb on + strand, within RR41_RS03665 at 753.528 kb on - strand, within RR41_RS03665 at 753.528 kb on - strand, within RR41_RS03665 at 753.528 kb on - strand, within RR41_RS03665 at 753.530 kb on - strand, within RR41_RS03665 at 753.542 kb on - strand, within RR41_RS03665 at 753.542 kb on - strand, within RR41_RS03665 at 753.570 kb on + strand, within RR41_RS03665 at 753.574 kb on + strand, within RR41_RS03665 at 753.575 kb on - strand, within RR41_RS03665 at 753.679 kb on + strand, within RR41_RS03665 at 753.680 kb on - strand, within RR41_RS03665 at 753.706 kb on + strand, within RR41_RS03665 at 753.707 kb on - strand, within RR41_RS03665 at 753.708 kb on + strand, within RR41_RS03665 at 753.709 kb on - strand, within RR41_RS03665 at 753.754 kb on + strand, within RR41_RS03665 at 753.777 kb on + strand, within RR41_RS03665 at 753.778 kb on - strand, within RR41_RS03665 at 753.792 kb on + strand, within RR41_RS03665 at 753.807 kb on + strand, within RR41_RS03665 at 753.808 kb on - strand, within RR41_RS03665 at 753.863 kb on - strand, within RR41_RS03665 at 753.863 kb on - strand, within RR41_RS03665 at 753.876 kb on + strand, within RR41_RS03665 at 753.916 kb on + strand, within RR41_RS03665 at 753.920 kb on - strand, within RR41_RS03665 at 753.971 kb on + strand, within RR41_RS03665 at 753.972 kb on - strand, within RR41_RS03665 at 753.984 kb on + strand, within RR41_RS03665 at 754.061 kb on + strand, within RR41_RS03665 at 754.062 kb on - strand, within RR41_RS03665 at 754.062 kb on - strand, within RR41_RS03665 at 754.062 kb on - strand, within RR41_RS03665 at 754.071 kb on + strand, within RR41_RS03665 at 754.071 kb on + strand, within RR41_RS03665 at 754.072 kb on - strand, within RR41_RS03665 at 754.072 kb on - strand, within RR41_RS03665 at 754.076 kb on + strand, within RR41_RS03665 at 754.077 kb on - strand, within RR41_RS03665 at 754.113 kb on + strand, within RR41_RS03665 at 754.113 kb on + strand, within RR41_RS03665 at 754.120 kb on - strand, within RR41_RS03665 at 754.151 kb on + strand at 754.158 kb on + strand at 754.158 kb on + strand at 754.158 kb on + strand at 754.159 kb on - strand at 754.159 kb on - strand at 754.163 kb on + strand at 754.164 kb on - strand at 754.164 kb on - strand at 754.183 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 751,416 + RR41_RS03655 0.26 +0.1 751,435 + RR41_RS03655 0.28 -0.9 751,436 - RR41_RS03655 0.28 -0.6 751,439 - RR41_RS03655 0.28 +0.3 751,449 + RR41_RS03655 0.30 -0.2 751,450 - RR41_RS03655 0.30 +0.7 751,450 - RR41_RS03655 0.30 -0.9 751,565 + RR41_RS03655 0.44 -0.5 751,597 + RR41_RS03655 0.48 -2.7 751,600 - RR41_RS03655 0.49 +0.1 751,600 - RR41_RS03655 0.49 -0.5 751,600 - RR41_RS03655 0.49 -1.2 751,605 - RR41_RS03655 0.49 -2.7 751,621 + RR41_RS03655 0.51 +1.1 751,623 + RR41_RS03655 0.51 -1.5 751,623 + RR41_RS03655 0.51 -3.8 751,623 + RR41_RS03655 0.51 -1.5 751,623 + RR41_RS03655 0.51 +0.1 751,623 + RR41_RS03655 0.51 -2.2 751,623 + RR41_RS03655 0.51 -0.1 751,623 + RR41_RS03655 0.51 -1.9 751,624 - RR41_RS03655 0.52 -1.6 751,624 - RR41_RS03655 0.52 -2.2 751,624 - RR41_RS03655 0.52 -0.3 751,627 + RR41_RS03655 0.52 -1.9 751,628 - RR41_RS03655 0.52 -0.9 751,698 - RR41_RS03655 0.61 -2.7 751,698 - RR41_RS03655 0.61 +2.2 751,700 - RR41_RS03655 0.61 +0.7 751,700 - RR41_RS03655 0.61 -2.9 751,731 + RR41_RS03655 0.65 -0.9 751,750 + RR41_RS03655 0.67 -0.5 751,751 - RR41_RS03655 0.67 -2.2 751,751 - RR41_RS03655 0.67 -0.5 751,751 - RR41_RS03655 0.67 -0.9 751,835 + RR41_RS03655 0.78 -1.2 751,835 + RR41_RS03655 0.78 -0.3 751,885 + RR41_RS03655 0.84 +3.1 751,975 + +0.4 751,978 + -2.7 751,978 + -0.3 751,978 + -2.1 751,979 - -2.5 752,038 + -0.9 752,043 - +0.7 752,043 - +0.1 752,051 + -1.6 752,055 - +0.1 752,055 - -0.5 752,107 - -2.5 752,119 + -0.9 752,120 - +2.7 752,121 + -3.4 752,171 - +0.1 752,179 + +0.7 752,180 - +2.7 752,202 - +1.7 752,217 - -2.7 752,220 + -0.6 752,258 - -0.2 752,295 - -1.5 752,343 + +0.1 752,386 + +0.7 752,387 - -2.7 752,387 - -1.5 752,471 + RR41_RS03660 0.13 +0.4 752,472 - RR41_RS03660 0.13 -2.9 752,472 - RR41_RS03660 0.13 -3.2 752,513 - RR41_RS03660 0.18 -3.1 752,513 - RR41_RS03660 0.18 -1.9 752,525 - RR41_RS03660 0.19 -1.9 752,551 + RR41_RS03660 0.22 -1.5 752,551 + RR41_RS03660 0.22 -1.2 752,575 + RR41_RS03660 0.25 -1.5 752,632 + RR41_RS03660 0.32 -0.9 752,633 - RR41_RS03660 0.32 -0.9 752,633 - RR41_RS03660 0.32 -3.5 752,658 - RR41_RS03660 0.36 -1.5 752,668 + RR41_RS03660 0.37 -2.9 752,710 + RR41_RS03660 0.42 -2.2 752,710 + RR41_RS03660 0.42 +0.1 752,710 + RR41_RS03660 0.42 -3.4 752,762 + RR41_RS03660 0.48 +0.1 752,763 - RR41_RS03660 0.48 -1.5 752,822 - RR41_RS03660 0.56 +1.1 752,822 - RR41_RS03660 0.56 -1.9 752,884 + RR41_RS03660 0.63 -2.2 752,884 + RR41_RS03660 0.63 +2.1 752,885 - RR41_RS03660 0.63 -2.7 752,959 + RR41_RS03660 0.72 -0.9 752,959 + RR41_RS03660 0.72 +1.7 752,959 + RR41_RS03660 0.72 -1.7 752,959 + RR41_RS03660 0.72 -2.2 753,014 + RR41_RS03660 0.79 +0.1 753,014 + RR41_RS03660 0.79 -3.6 753,023 + RR41_RS03660 0.80 +0.1 753,050 + RR41_RS03660 0.83 -2.7 753,051 - RR41_RS03660 0.84 -1.3 753,062 - RR41_RS03660 0.85 -1.2 753,101 + RR41_RS03660 0.90 -1.5 753,101 + RR41_RS03660 0.90 -2.5 753,101 + RR41_RS03660 0.90 -4.8 753,101 + RR41_RS03660 0.90 -2.4 753,102 - RR41_RS03660 0.90 +0.1 753,106 + +0.1 753,112 + -1.5 753,113 - +0.1 753,113 - -1.9 753,133 + -0.9 753,136 + -2.5 753,136 + -1.5 753,161 + -1.9 753,161 + -0.3 753,161 + -0.9 753,171 - -0.8 753,183 + +0.7 753,184 - +2.1 753,248 - +1.4 753,257 - +0.7 753,257 - -2.6 753,257 - -0.2 753,269 + +1.1 753,269 + +1.0 753,270 - +0.7 753,270 - -1.9 753,296 - -2.1 753,307 + +1.1 753,310 - -1.5 753,310 - -1.5 753,310 - +0.1 753,313 - -0.9 753,319 + -1.5 753,323 + -1.2 753,390 - +2.0 753,411 + -1.5 753,412 - +0.5 753,424 + -0.9 753,425 - -1.9 753,450 + RR41_RS03665 0.12 -2.2 753,477 + RR41_RS03665 0.15 -0.5 753,477 + RR41_RS03665 0.15 -2.9 753,477 + RR41_RS03665 0.15 +1.2 753,477 + RR41_RS03665 0.15 +0.7 753,527 + RR41_RS03665 0.20 -2.5 753,527 + RR41_RS03665 0.20 -1.5 753,527 + RR41_RS03665 0.20 +2.9 753,527 + RR41_RS03665 0.20 -0.5 753,527 + RR41_RS03665 0.20 -0.9 753,528 - RR41_RS03665 0.21 +0.1 753,528 - RR41_RS03665 0.21 -0.2 753,528 - RR41_RS03665 0.21 -1.5 753,530 - RR41_RS03665 0.21 -2.9 753,542 - RR41_RS03665 0.22 +2.4 753,542 - RR41_RS03665 0.22 -1.6 753,570 + RR41_RS03665 0.25 -1.5 753,574 + RR41_RS03665 0.26 +0.1 753,575 - RR41_RS03665 0.26 -0.6 753,679 + RR41_RS03665 0.37 -2.2 753,680 - RR41_RS03665 0.38 +3.1 753,706 + RR41_RS03665 0.40 +1.1 753,707 - RR41_RS03665 0.41 -2.2 753,708 + RR41_RS03665 0.41 -2.7 753,709 - RR41_RS03665 0.41 +1.7 753,754 + RR41_RS03665 0.46 -3.4 753,777 + RR41_RS03665 0.48 +0.5 753,778 - RR41_RS03665 0.49 -1.7 753,792 + RR41_RS03665 0.50 +0.6 753,807 + RR41_RS03665 0.52 +2.4 753,808 - RR41_RS03665 0.52 +0.1 753,863 - RR41_RS03665 0.58 +1.4 753,863 - RR41_RS03665 0.58 -1.1 753,876 + RR41_RS03665 0.60 +3.4 753,916 + RR41_RS03665 0.64 +0.1 753,920 - RR41_RS03665 0.64 +0.1 753,971 + RR41_RS03665 0.70 -1.5 753,972 - RR41_RS03665 0.70 -1.5 753,984 + RR41_RS03665 0.72 -1.3 754,061 + RR41_RS03665 0.80 +0.1 754,062 - RR41_RS03665 0.80 +0.1 754,062 - RR41_RS03665 0.80 -0.9 754,062 - RR41_RS03665 0.80 -2.9 754,071 + RR41_RS03665 0.81 +1.2 754,071 + RR41_RS03665 0.81 +2.7 754,072 - RR41_RS03665 0.81 +0.7 754,072 - RR41_RS03665 0.81 -0.9 754,076 + RR41_RS03665 0.82 +0.1 754,077 - RR41_RS03665 0.82 -1.5 754,113 + RR41_RS03665 0.86 -3.1 754,113 + RR41_RS03665 0.86 -1.1 754,120 - RR41_RS03665 0.87 -0.5 754,151 + -1.5 754,158 + -0.7 754,158 + +1.1 754,158 + -0.2 754,159 - -2.2 754,159 - -2.2 754,163 + -0.6 754,164 - +0.1 754,164 - -2.9 754,183 + +0.1
Or see this region's nucleotide sequence