Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS02870 and RR41_RS02875 are separated by 23 nucleotides RR41_RS02875 and RR41_RS02880 are separated by 4 nucleotides RR41_RS02880 and RR41_RS02885 are separated by 34 nucleotides RR41_RS02885 and RR41_RS02890 are separated by 44 nucleotides
RR41_RS02870: RR41_RS02870 - FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 582,727 to 584,598
_RS02870
RR41_RS02875: RR41_RS02875 - hypothetical protein, at 584,622 to 585,101
_RS02875
RR41_RS02880: RR41_RS02880 - YciI family protein, at 585,106 to 585,408
_RS02880
RR41_RS02885: RR41_RS02885 - septation protein IspZ, at 585,443 to 586,057
_RS02885
RR41_RS02890: RR41_RS02890 - PHP domain-containing protein, at 586,102 to 586,953
_RS02890
Position (kb) 585
586 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 584.106 kb on + strand, within RR41_RS02870 at 584.107 kb on - strand, within RR41_RS02870 at 584.118 kb on + strand, within RR41_RS02870 at 584.118 kb on + strand, within RR41_RS02870 at 584.140 kb on + strand, within RR41_RS02870 at 584.140 kb on + strand, within RR41_RS02870 at 584.140 kb on + strand, within RR41_RS02870 at 584.140 kb on + strand, within RR41_RS02870 at 584.141 kb on - strand, within RR41_RS02870 at 584.141 kb on - strand, within RR41_RS02870 at 584.204 kb on + strand, within RR41_RS02870 at 584.214 kb on + strand, within RR41_RS02870 at 584.248 kb on + strand, within RR41_RS02870 at 584.254 kb on + strand, within RR41_RS02870 at 584.255 kb on - strand, within RR41_RS02870 at 584.282 kb on - strand, within RR41_RS02870 at 584.301 kb on + strand, within RR41_RS02870 at 584.311 kb on + strand, within RR41_RS02870 at 584.311 kb on + strand, within RR41_RS02870 at 584.312 kb on - strand, within RR41_RS02870 at 584.312 kb on - strand, within RR41_RS02870 at 584.347 kb on + strand, within RR41_RS02870 at 584.347 kb on + strand, within RR41_RS02870 at 584.348 kb on - strand, within RR41_RS02870 at 584.367 kb on + strand, within RR41_RS02870 at 584.368 kb on - strand, within RR41_RS02870 at 584.372 kb on - strand, within RR41_RS02870 at 584.443 kb on + strand at 584.458 kb on + strand at 584.464 kb on + strand at 584.464 kb on + strand at 584.490 kb on + strand at 584.491 kb on - strand at 584.496 kb on + strand at 584.550 kb on + strand at 584.550 kb on + strand at 584.581 kb on - strand at 584.608 kb on + strand at 584.608 kb on + strand at 584.648 kb on - strand at 584.653 kb on + strand at 584.654 kb on - strand at 584.654 kb on - strand at 584.708 kb on - strand, within RR41_RS02875 at 584.708 kb on - strand, within RR41_RS02875 at 584.709 kb on + strand, within RR41_RS02875 at 584.710 kb on - strand, within RR41_RS02875 at 584.740 kb on - strand, within RR41_RS02875 at 584.748 kb on + strand, within RR41_RS02875 at 584.776 kb on - strand, within RR41_RS02875 at 584.776 kb on - strand, within RR41_RS02875 at 584.824 kb on - strand, within RR41_RS02875 at 584.857 kb on - strand, within RR41_RS02875 at 584.857 kb on - strand, within RR41_RS02875 at 584.857 kb on - strand, within RR41_RS02875 at 584.942 kb on + strand, within RR41_RS02875 at 584.942 kb on + strand, within RR41_RS02875 at 584.943 kb on - strand, within RR41_RS02875 at 584.958 kb on + strand, within RR41_RS02875 at 584.958 kb on + strand, within RR41_RS02875 at 584.984 kb on + strand, within RR41_RS02875 at 585.061 kb on - strand at 585.061 kb on - strand at 585.061 kb on - strand at 585.130 kb on - strand at 585.130 kb on - strand at 585.153 kb on + strand, within RR41_RS02880 at 585.154 kb on - strand, within RR41_RS02880 at 585.155 kb on + strand, within RR41_RS02880 at 585.155 kb on + strand, within RR41_RS02880 at 585.155 kb on + strand, within RR41_RS02880 at 585.155 kb on + strand, within RR41_RS02880 at 585.155 kb on + strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.156 kb on - strand, within RR41_RS02880 at 585.295 kb on + strand, within RR41_RS02880 at 585.296 kb on - strand, within RR41_RS02880 at 585.296 kb on - strand, within RR41_RS02880 at 585.296 kb on - strand, within RR41_RS02880 at 585.334 kb on - strand, within RR41_RS02880 at 585.417 kb on - strand at 585.417 kb on - strand at 585.423 kb on - strand at 585.423 kb on - strand at 585.423 kb on - strand at 585.445 kb on - strand at 585.445 kb on - strand at 585.445 kb on - strand at 585.445 kb on - strand at 586.091 kb on + strand at 586.092 kb on - strand at 586.092 kb on - strand at 586.092 kb on - strand at 586.094 kb on + strand at 586.094 kb on + strand at 586.095 kb on - strand at 586.095 kb on - strand at 586.095 kb on - strand at 586.112 kb on + strand at 586.112 kb on + strand at 586.113 kb on - strand at 586.118 kb on + strand at 586.118 kb on + strand at 586.118 kb on + strand at 586.118 kb on + strand at 586.119 kb on - strand at 586.123 kb on - strand at 586.128 kb on + strand at 586.128 kb on + strand at 586.128 kb on + strand at 586.128 kb on + strand at 586.128 kb on + strand at 586.128 kb on + strand at 586.129 kb on - strand at 586.129 kb on - strand at 586.129 kb on - strand at 586.129 kb on - strand at 586.134 kb on + strand at 586.135 kb on - strand at 586.135 kb on - strand at 586.202 kb on + strand, within RR41_RS02890 at 586.203 kb on - strand, within RR41_RS02890 at 586.334 kb on - strand, within RR41_RS02890 at 586.340 kb on + strand, within RR41_RS02890 at 586.344 kb on + strand, within RR41_RS02890 at 586.344 kb on + strand, within RR41_RS02890 at 586.344 kb on + strand, within RR41_RS02890 at 586.345 kb on - strand, within RR41_RS02890 at 586.359 kb on + strand, within RR41_RS02890 at 586.359 kb on + strand, within RR41_RS02890 at 586.392 kb on - strand, within RR41_RS02890
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 584,106 + RR41_RS02870 0.74 -0.2 584,107 - RR41_RS02870 0.74 +0.2 584,118 + RR41_RS02870 0.74 +1.6 584,118 + RR41_RS02870 0.74 -0.4 584,140 + RR41_RS02870 0.75 -1.0 584,140 + RR41_RS02870 0.75 -0.7 584,140 + RR41_RS02870 0.75 +0.0 584,140 + RR41_RS02870 0.75 -3.0 584,141 - RR41_RS02870 0.76 -3.9 584,141 - RR41_RS02870 0.76 -0.8 584,204 + RR41_RS02870 0.79 +1.4 584,214 + RR41_RS02870 0.79 +0.4 584,248 + RR41_RS02870 0.81 -1.7 584,254 + RR41_RS02870 0.82 -1.6 584,255 - RR41_RS02870 0.82 -1.2 584,282 - RR41_RS02870 0.83 +2.5 584,301 + RR41_RS02870 0.84 +0.3 584,311 + RR41_RS02870 0.85 +1.5 584,311 + RR41_RS02870 0.85 -1.6 584,312 - RR41_RS02870 0.85 -0.3 584,312 - RR41_RS02870 0.85 +0.0 584,347 + RR41_RS02870 0.87 -0.4 584,347 + RR41_RS02870 0.87 -1.0 584,348 - RR41_RS02870 0.87 +0.3 584,367 + RR41_RS02870 0.88 +0.4 584,368 - RR41_RS02870 0.88 -2.6 584,372 - RR41_RS02870 0.88 -1.0 584,443 + +1.4 584,458 + -1.3 584,464 + +0.0 584,464 + +0.4 584,490 + -1.8 584,491 - -0.4 584,496 + +0.7 584,550 + -1.0 584,550 + -0.4 584,581 - +0.6 584,608 + +0.0 584,608 + +0.0 584,648 - +0.0 584,653 + -3.7 584,654 - -2.0 584,654 - +0.0 584,708 - RR41_RS02875 0.18 -0.3 584,708 - RR41_RS02875 0.18 -2.8 584,709 + RR41_RS02875 0.18 +1.6 584,710 - RR41_RS02875 0.18 -2.1 584,740 - RR41_RS02875 0.25 -1.0 584,748 + RR41_RS02875 0.26 +1.0 584,776 - RR41_RS02875 0.32 +0.6 584,776 - RR41_RS02875 0.32 -1.0 584,824 - RR41_RS02875 0.42 +1.6 584,857 - RR41_RS02875 0.49 -0.6 584,857 - RR41_RS02875 0.49 -1.1 584,857 - RR41_RS02875 0.49 +0.5 584,942 + RR41_RS02875 0.67 +0.0 584,942 + RR41_RS02875 0.67 +0.0 584,943 - RR41_RS02875 0.67 +0.0 584,958 + RR41_RS02875 0.70 +0.0 584,958 + RR41_RS02875 0.70 -1.6 584,984 + RR41_RS02875 0.75 +2.7 585,061 - -2.6 585,061 - -1.0 585,061 - -2.7 585,130 - +2.6 585,130 - -2.4 585,153 + RR41_RS02880 0.16 -2.3 585,154 - RR41_RS02880 0.16 -2.6 585,155 + RR41_RS02880 0.16 -1.0 585,155 + RR41_RS02880 0.16 +1.0 585,155 + RR41_RS02880 0.16 -1.2 585,155 + RR41_RS02880 0.16 +2.2 585,155 + RR41_RS02880 0.16 +0.4 585,156 - RR41_RS02880 0.17 -1.0 585,156 - RR41_RS02880 0.17 -2.0 585,156 - RR41_RS02880 0.17 -3.3 585,156 - RR41_RS02880 0.17 -2.0 585,156 - RR41_RS02880 0.17 -2.4 585,156 - RR41_RS02880 0.17 +2.0 585,295 + RR41_RS02880 0.62 -2.3 585,296 - RR41_RS02880 0.63 -1.3 585,296 - RR41_RS02880 0.63 +1.5 585,296 - RR41_RS02880 0.63 -2.1 585,334 - RR41_RS02880 0.75 -2.0 585,417 - -1.0 585,417 - -1.6 585,423 - -1.0 585,423 - +0.0 585,423 - -0.2 585,445 - -2.0 585,445 - +0.5 585,445 - +0.8 585,445 - -2.0 586,091 + -1.6 586,092 - +0.7 586,092 - -3.1 586,092 - +0.0 586,094 + +0.0 586,094 + +0.6 586,095 - -1.0 586,095 - -2.3 586,095 - +0.0 586,112 + -1.0 586,112 + -0.8 586,113 - +1.8 586,118 + -1.2 586,118 + +0.3 586,118 + -2.0 586,118 + +0.6 586,119 - +0.7 586,123 - +1.0 586,128 + -1.4 586,128 + -0.6 586,128 + -0.7 586,128 + +0.9 586,128 + -0.7 586,128 + -2.3 586,129 - +2.5 586,129 - -0.5 586,129 - +0.9 586,129 - -1.0 586,134 + +0.0 586,135 - -0.3 586,135 - -0.4 586,202 + RR41_RS02890 0.12 -3.0 586,203 - RR41_RS02890 0.12 +2.0 586,334 - RR41_RS02890 0.27 -3.0 586,340 + RR41_RS02890 0.28 -2.0 586,344 + RR41_RS02890 0.28 +0.0 586,344 + RR41_RS02890 0.28 +1.3 586,344 + RR41_RS02890 0.28 -1.0 586,345 - RR41_RS02890 0.29 -0.8 586,359 + RR41_RS02890 0.30 +1.3 586,359 + RR41_RS02890 0.30 -1.8 586,392 - RR41_RS02890 0.34 -3.4
Or see this region's nucleotide sequence