Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS02640

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS02635 and RR41_RS02640 are separated by 5 nucleotidesRR41_RS02640 and RR41_RS02645 are separated by 516 nucleotides RR41_RS02635: RR41_RS02635 - diguanylate cyclase, at 533,300 to 534,523 _RS02635 RR41_RS02640: RR41_RS02640 - YfiR family protein, at 534,529 to 535,032 _RS02640 RR41_RS02645: RR41_RS02645 - 16S ribosomal RNA, at 535,549 to 537,085 _RS02645 Position (kb) 534 535 536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 533.682 kb on - strand, within RR41_RS02635at 533.729 kb on - strand, within RR41_RS02635at 533.732 kb on + strand, within RR41_RS02635at 533.732 kb on + strand, within RR41_RS02635at 533.732 kb on + strand, within RR41_RS02635at 533.732 kb on + strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.733 kb on - strand, within RR41_RS02635at 533.736 kb on - strand, within RR41_RS02635at 533.751 kb on + strand, within RR41_RS02635at 533.769 kb on - strand, within RR41_RS02635at 533.855 kb on + strand, within RR41_RS02635at 533.856 kb on - strand, within RR41_RS02635at 533.876 kb on + strand, within RR41_RS02635at 533.981 kb on - strand, within RR41_RS02635at 534.029 kb on - strand, within RR41_RS02635at 534.029 kb on - strand, within RR41_RS02635at 534.033 kb on - strand, within RR41_RS02635at 534.033 kb on - strand, within RR41_RS02635at 534.058 kb on + strand, within RR41_RS02635at 534.059 kb on - strand, within RR41_RS02635at 534.059 kb on - strand, within RR41_RS02635at 534.059 kb on - strand, within RR41_RS02635at 534.117 kb on - strand, within RR41_RS02635at 534.149 kb on + strand, within RR41_RS02635at 534.249 kb on + strand, within RR41_RS02635at 534.250 kb on - strand, within RR41_RS02635at 534.250 kb on - strand, within RR41_RS02635at 534.268 kb on + strand, within RR41_RS02635at 534.285 kb on + strand, within RR41_RS02635at 534.365 kb on - strand, within RR41_RS02635at 534.491 kb on + strandat 534.492 kb on - strandat 534.492 kb on - strandat 534.492 kb on - strandat 534.507 kb on + strandat 534.514 kb on + strandat 534.514 kb on + strandat 534.515 kb on - strandat 534.515 kb on - strandat 534.515 kb on - strandat 534.523 kb on + strandat 534.544 kb on - strandat 534.553 kb on + strandat 534.590 kb on - strand, within RR41_RS02640at 534.590 kb on - strand, within RR41_RS02640at 534.598 kb on + strand, within RR41_RS02640at 534.599 kb on - strand, within RR41_RS02640at 534.599 kb on - strand, within RR41_RS02640at 534.604 kb on - strand, within RR41_RS02640at 534.636 kb on - strand, within RR41_RS02640at 534.637 kb on + strand, within RR41_RS02640at 534.648 kb on + strand, within RR41_RS02640at 534.675 kb on + strand, within RR41_RS02640at 534.708 kb on - strand, within RR41_RS02640at 534.812 kb on + strand, within RR41_RS02640at 534.819 kb on - strand, within RR41_RS02640at 534.819 kb on - strand, within RR41_RS02640at 534.823 kb on + strand, within RR41_RS02640at 534.837 kb on - strand, within RR41_RS02640at 534.850 kb on - strand, within RR41_RS02640at 534.856 kb on - strand, within RR41_RS02640at 534.896 kb on - strand, within RR41_RS02640at 534.913 kb on - strand, within RR41_RS02640at 534.942 kb on - strand, within RR41_RS02640at 534.949 kb on - strand, within RR41_RS02640at 534.965 kb on + strand, within RR41_RS02640at 534.992 kb on - strandat 534.992 kb on - strandat 534.992 kb on - strandat 534.998 kb on - strandat 535.068 kb on + strandat 535.073 kb on + strandat 535.073 kb on + strandat 535.073 kb on + strandat 535.074 kb on - strandat 535.088 kb on - strandat 535.088 kb on - strandat 535.106 kb on - strandat 535.106 kb on - strandat 535.114 kb on + strandat 535.114 kb on + strandat 535.114 kb on + strandat 535.114 kb on + strandat 535.115 kb on - strandat 535.115 kb on - strandat 535.115 kb on - strandat 535.115 kb on - strandat 535.115 kb on - strandat 535.115 kb on - strandat 535.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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533,682 - RR41_RS02635 0.31 -0.2
533,729 - RR41_RS02635 0.35 -2.6
533,732 + RR41_RS02635 0.35 -1.0
533,732 + RR41_RS02635 0.35 +1.0
533,732 + RR41_RS02635 0.35 -1.0
533,732 + RR41_RS02635 0.35 -3.8
533,733 - RR41_RS02635 0.35 -1.0
533,733 - RR41_RS02635 0.35 -2.3
533,733 - RR41_RS02635 0.35 -1.6
533,733 - RR41_RS02635 0.35 +3.2
533,733 - RR41_RS02635 0.35 -1.2
533,733 - RR41_RS02635 0.35 +1.0
533,733 - RR41_RS02635 0.35 +0.6
533,736 - RR41_RS02635 0.36 +0.9
533,751 + RR41_RS02635 0.37 -2.0
533,769 - RR41_RS02635 0.38 +1.6
533,855 + RR41_RS02635 0.45 -1.3
533,856 - RR41_RS02635 0.45 +1.8
533,876 + RR41_RS02635 0.47 -1.6
533,981 - RR41_RS02635 0.56 -0.7
534,029 - RR41_RS02635 0.60 -0.0
534,029 - RR41_RS02635 0.60 -1.8
534,033 - RR41_RS02635 0.60 -1.0
534,033 - RR41_RS02635 0.60 -2.0
534,058 + RR41_RS02635 0.62 -1.0
534,059 - RR41_RS02635 0.62 -0.4
534,059 - RR41_RS02635 0.62 +1.4
534,059 - RR41_RS02635 0.62 -3.5
534,117 - RR41_RS02635 0.67 +1.6
534,149 + RR41_RS02635 0.69 +1.2
534,249 + RR41_RS02635 0.78 +1.0
534,250 - RR41_RS02635 0.78 +1.0
534,250 - RR41_RS02635 0.78 -1.0
534,268 + RR41_RS02635 0.79 +0.4
534,285 + RR41_RS02635 0.80 -0.0
534,365 - RR41_RS02635 0.87 -2.0
534,491 + -1.7
534,492 - -1.0
534,492 - +1.8
534,492 - -0.5
534,507 + -2.5
534,514 + -1.7
534,514 + -2.0
534,515 - -2.0
534,515 - -0.0
534,515 - +0.5
534,523 + +2.5
534,544 - -0.0
534,553 + -0.3
534,590 - RR41_RS02640 0.12 -1.9
534,590 - RR41_RS02640 0.12 +1.3
534,598 + RR41_RS02640 0.14 -2.6
534,599 - RR41_RS02640 0.14 -1.7
534,599 - RR41_RS02640 0.14 -1.6
534,604 - RR41_RS02640 0.15 -1.6
534,636 - RR41_RS02640 0.21 -1.0
534,637 + RR41_RS02640 0.21 -0.2
534,648 + RR41_RS02640 0.24 -0.0
534,675 + RR41_RS02640 0.29 -2.6
534,708 - RR41_RS02640 0.36 +0.6
534,812 + RR41_RS02640 0.56 -1.9
534,819 - RR41_RS02640 0.58 -1.0
534,819 - RR41_RS02640 0.58 -2.6
534,823 + RR41_RS02640 0.58 -0.6
534,837 - RR41_RS02640 0.61 -2.8
534,850 - RR41_RS02640 0.64 -1.0
534,856 - RR41_RS02640 0.65 -0.0
534,896 - RR41_RS02640 0.73 +1.0
534,913 - RR41_RS02640 0.76 +0.2
534,942 - RR41_RS02640 0.82 -1.3
534,949 - RR41_RS02640 0.83 -0.0
534,965 + RR41_RS02640 0.87 -2.0
534,992 - -1.0
534,992 - +0.3
534,992 - +1.2
534,998 - +0.4
535,068 + -1.0
535,073 + -0.3
535,073 + -1.0
535,073 + +1.6
535,074 - -0.0
535,088 - -0.0
535,088 - -0.4
535,106 - -1.3
535,106 - -2.2
535,114 + -2.0
535,114 + -0.0
535,114 + -0.6
535,114 + -1.0
535,115 - -0.0
535,115 - +0.4
535,115 - +1.0
535,115 - -0.8
535,115 - +0.3
535,115 - -0.5
535,143 - +2.3

Or see this region's nucleotide sequence