Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS02080

Experiment: RPMI_TSB_serum temperature; 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR41_RS02075 and RR41_RS02080 are separated by 20 nucleotidesRR41_RS02080 and RR41_RS02085 are separated by 79 nucleotidesRR41_RS02085 and RR41_RS19165 are separated by 72 nucleotides RR41_RS02075: RR41_RS02075 - ATP-dependent DNA helicase RecG, at 437,347 to 439,392 _RS02075 RR41_RS02080: RR41_RS02080 - NAD(P)H-binding protein, at 439,413 to 440,228 _RS02080 RR41_RS02085: RR41_RS02085 - putative multidrug efflux protein AdeT2, at 440,308 to 441,006 _RS02085 RR41_RS19165: RR41_RS19165 - IS4-like element ISAba1 family transposase, at 441,079 to 442,169 _RS19165 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.419 kb on - strandat 439.424 kb on - strandat 439.424 kb on - strandat 439.424 kb on - strandat 439.424 kb on - strandat 439.439 kb on + strandat 439.440 kb on - strandat 439.500 kb on - strand, within RR41_RS02080at 439.540 kb on + strand, within RR41_RS02080at 439.583 kb on - strand, within RR41_RS02080at 439.588 kb on + strand, within RR41_RS02080at 439.593 kb on + strand, within RR41_RS02080at 439.645 kb on - strand, within RR41_RS02080at 439.702 kb on + strand, within RR41_RS02080at 440.097 kb on - strand, within RR41_RS02080at 440.193 kb on + strandat 440.193 kb on + strandat 440.193 kb on + strandat 440.193 kb on + strandat 440.194 kb on - strandat 440.194 kb on - strandat 440.197 kb on + strandat 440.197 kb on + strandat 440.197 kb on + strandat 440.198 kb on - strandat 440.200 kb on - strandat 440.201 kb on - strandat 440.206 kb on + strandat 440.249 kb on + strandat 440.250 kb on - strandat 440.250 kb on - strandat 440.261 kb on + strandat 440.261 kb on + strandat 440.277 kb on + strandat 440.294 kb on + strandat 440.303 kb on + strandat 440.324 kb on + strandat 440.343 kb on - strandat 440.343 kb on - strandat 440.386 kb on + strand, within RR41_RS02085at 440.386 kb on + strand, within RR41_RS02085at 440.416 kb on - strand, within RR41_RS02085at 440.427 kb on - strand, within RR41_RS02085at 440.427 kb on - strand, within RR41_RS02085at 440.427 kb on - strand, within RR41_RS02085at 440.441 kb on + strand, within RR41_RS02085at 440.442 kb on - strand, within RR41_RS02085at 440.443 kb on + strand, within RR41_RS02085at 440.444 kb on - strand, within RR41_RS02085at 440.456 kb on - strand, within RR41_RS02085at 440.523 kb on + strand, within RR41_RS02085at 440.538 kb on - strand, within RR41_RS02085at 440.548 kb on - strand, within RR41_RS02085at 440.553 kb on + strand, within RR41_RS02085at 440.554 kb on - strand, within RR41_RS02085at 440.556 kb on + strand, within RR41_RS02085at 440.557 kb on - strand, within RR41_RS02085at 440.557 kb on - strand, within RR41_RS02085at 440.560 kb on + strand, within RR41_RS02085at 440.566 kb on + strand, within RR41_RS02085at 440.567 kb on - strand, within RR41_RS02085at 440.567 kb on - strand, within RR41_RS02085at 440.568 kb on + strand, within RR41_RS02085at 440.568 kb on + strand, within RR41_RS02085at 440.578 kb on - strand, within RR41_RS02085at 440.605 kb on - strand, within RR41_RS02085at 440.605 kb on - strand, within RR41_RS02085at 440.606 kb on + strand, within RR41_RS02085at 440.606 kb on + strand, within RR41_RS02085at 440.607 kb on - strand, within RR41_RS02085at 440.633 kb on + strand, within RR41_RS02085at 440.646 kb on - strand, within RR41_RS02085at 440.655 kb on + strand, within RR41_RS02085at 440.686 kb on + strand, within RR41_RS02085at 440.686 kb on + strand, within RR41_RS02085at 440.687 kb on - strand, within RR41_RS02085at 440.687 kb on - strand, within RR41_RS02085at 440.700 kb on + strand, within RR41_RS02085at 440.701 kb on - strand, within RR41_RS02085at 440.724 kb on + strand, within RR41_RS02085at 440.724 kb on + strand, within RR41_RS02085at 440.725 kb on - strand, within RR41_RS02085at 440.766 kb on + strand, within RR41_RS02085at 440.767 kb on - strand, within RR41_RS02085at 440.767 kb on - strand, within RR41_RS02085at 440.843 kb on + strand, within RR41_RS02085at 440.843 kb on + strand, within RR41_RS02085at 440.844 kb on - strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.845 kb on + strand, within RR41_RS02085at 440.846 kb on - strand, within RR41_RS02085at 440.846 kb on - strand, within RR41_RS02085at 440.846 kb on - strand, within RR41_RS02085at 440.846 kb on - strand, within RR41_RS02085at 440.899 kb on - strand, within RR41_RS02085at 440.899 kb on - strand, within RR41_RS02085at 440.929 kb on + strand, within RR41_RS02085at 440.930 kb on - strand, within RR41_RS02085at 440.932 kb on - strand, within RR41_RS02085at 440.958 kb on + strandat 441.000 kb on + strandat 441.002 kb on + strandat 441.003 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
remove
439,419 - +1.5
439,424 - -1.1
439,424 - -1.1
439,424 - +0.4
439,424 - -2.4
439,439 + -2.0
439,440 - +1.9
439,500 - RR41_RS02080 0.11 -1.6
439,540 + RR41_RS02080 0.16 -2.4
439,583 - RR41_RS02080 0.21 -2.2
439,588 + RR41_RS02080 0.21 -0.1
439,593 + RR41_RS02080 0.22 -3.2
439,645 - RR41_RS02080 0.28 -1.6
439,702 + RR41_RS02080 0.35 -0.1
440,097 - RR41_RS02080 0.84 -0.1
440,193 + -2.5
440,193 + -0.1
440,193 + +0.3
440,193 + -2.6
440,194 - +0.3
440,194 - -1.1
440,197 + -0.1
440,197 + -3.1
440,197 + -2.1
440,198 - -0.1
440,200 - -2.1
440,201 - +0.9
440,206 + -0.5
440,249 + -0.3
440,250 - -0.6
440,250 - -0.1
440,261 + +0.8
440,261 + -1.3
440,277 + -0.1
440,294 + -0.9
440,303 + -0.5
440,324 + +0.3
440,343 - +0.9
440,343 - -0.1
440,386 + RR41_RS02085 0.11 -0.6
440,386 + RR41_RS02085 0.11 +0.5
440,416 - RR41_RS02085 0.15 -0.1
440,427 - RR41_RS02085 0.17 -0.1
440,427 - RR41_RS02085 0.17 -3.5
440,427 - RR41_RS02085 0.17 +0.6
440,441 + RR41_RS02085 0.19 -0.2
440,442 - RR41_RS02085 0.19 -2.4
440,443 + RR41_RS02085 0.19 +0.7
440,444 - RR41_RS02085 0.19 -0.9
440,456 - RR41_RS02085 0.21 +0.9
440,523 + RR41_RS02085 0.31 -0.5
440,538 - RR41_RS02085 0.33 -0.3
440,548 - RR41_RS02085 0.34 +1.5
440,553 + RR41_RS02085 0.35 -0.2
440,554 - RR41_RS02085 0.35 -2.6
440,556 + RR41_RS02085 0.35 -2.4
440,557 - RR41_RS02085 0.36 +0.9
440,557 - RR41_RS02085 0.36 +0.9
440,560 + RR41_RS02085 0.36 -0.1
440,566 + RR41_RS02085 0.37 -1.1
440,567 - RR41_RS02085 0.37 -0.1
440,567 - RR41_RS02085 0.37 +1.5
440,568 + RR41_RS02085 0.37 +0.2
440,568 + RR41_RS02085 0.37 -0.1
440,578 - RR41_RS02085 0.39 -0.5
440,605 - RR41_RS02085 0.42 +0.1
440,605 - RR41_RS02085 0.42 -1.1
440,606 + RR41_RS02085 0.43 -0.1
440,606 + RR41_RS02085 0.43 -2.1
440,607 - RR41_RS02085 0.43 +1.7
440,633 + RR41_RS02085 0.46 -0.5
440,646 - RR41_RS02085 0.48 -1.1
440,655 + RR41_RS02085 0.50 +1.3
440,686 + RR41_RS02085 0.54 -1.6
440,686 + RR41_RS02085 0.54 -0.3
440,687 - RR41_RS02085 0.54 -0.5
440,687 - RR41_RS02085 0.54 -0.3
440,700 + RR41_RS02085 0.56 -1.6
440,701 - RR41_RS02085 0.56 +0.9
440,724 + RR41_RS02085 0.60 +0.9
440,724 + RR41_RS02085 0.60 -2.6
440,725 - RR41_RS02085 0.60 -2.1
440,766 + RR41_RS02085 0.66 -1.6
440,767 - RR41_RS02085 0.66 -2.4
440,767 - RR41_RS02085 0.66 -0.8
440,843 + RR41_RS02085 0.77 -1.2
440,843 + RR41_RS02085 0.77 -0.6
440,844 - RR41_RS02085 0.77 +1.5
440,845 + RR41_RS02085 0.77 -2.6
440,845 + RR41_RS02085 0.77 -1.6
440,845 + RR41_RS02085 0.77 -1.1
440,845 + RR41_RS02085 0.77 +0.7
440,845 + RR41_RS02085 0.77 +1.3
440,845 + RR41_RS02085 0.77 -0.9
440,845 + RR41_RS02085 0.77 -2.1
440,846 - RR41_RS02085 0.77 +1.4
440,846 - RR41_RS02085 0.77 -0.5
440,846 - RR41_RS02085 0.77 -1.1
440,846 - RR41_RS02085 0.77 -0.5
440,899 - RR41_RS02085 0.85 -0.4
440,899 - RR41_RS02085 0.85 +0.3
440,929 + RR41_RS02085 0.89 -0.2
440,930 - RR41_RS02085 0.89 +1.4
440,932 - RR41_RS02085 0.89 +0.2
440,958 + +0.2
441,000 + -0.1
441,002 + -0.5
441,003 - -2.6

Or see this region's nucleotide sequence