Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS00860

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS00855 and RR41_RS00860 are separated by 97 nucleotidesRR41_RS00860 and RR41_RS00865 are separated by 107 nucleotides RR41_RS00855: RR41_RS00855 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 179,835 to 180,737 _RS00855 RR41_RS00860: RR41_RS00860 - DciA family protein, at 180,835 to 181,275 _RS00860 RR41_RS00865: RR41_RS00865 - M23 family metallopeptidase, at 181,383 to 182,075 _RS00865 Position (kb) 180 181 182Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 180.735 kb on + strandat 180.735 kb on + strandat 180.735 kb on + strandat 180.735 kb on + strandat 180.735 kb on + strandat 180.735 kb on + strandat 180.798 kb on + strandat 180.799 kb on - strandat 180.799 kb on - strandat 180.802 kb on - strandat 180.814 kb on - strandat 180.814 kb on - strandat 180.859 kb on + strandat 180.860 kb on - strandat 180.860 kb on - strandat 180.860 kb on - strandat 180.862 kb on + strandat 180.874 kb on - strandat 180.879 kb on + strand, within RR41_RS00860at 180.880 kb on - strand, within RR41_RS00860at 180.906 kb on + strand, within RR41_RS00860at 180.907 kb on - strand, within RR41_RS00860at 180.911 kb on - strand, within RR41_RS00860at 180.911 kb on - strand, within RR41_RS00860at 180.973 kb on - strand, within RR41_RS00860at 180.973 kb on - strand, within RR41_RS00860at 180.973 kb on - strand, within RR41_RS00860at 180.973 kb on - strand, within RR41_RS00860at 180.979 kb on - strand, within RR41_RS00860at 181.208 kb on - strand, within RR41_RS00860at 181.232 kb on - strandat 181.232 kb on - strandat 181.232 kb on - strandat 181.327 kb on + strandat 181.346 kb on + strandat 181.346 kb on + strandat 181.360 kb on - strandat 181.360 kb on - strandat 181.360 kb on - strandat 181.360 kb on - strandat 181.382 kb on + strandat 181.383 kb on - strandat 181.397 kb on + strandat 181.402 kb on + strandat 181.402 kb on + strandat 181.460 kb on + strand, within RR41_RS00865at 181.472 kb on + strand, within RR41_RS00865at 181.498 kb on + strand, within RR41_RS00865at 181.510 kb on + strand, within RR41_RS00865at 181.511 kb on - strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.524 kb on + strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.525 kb on - strand, within RR41_RS00865at 181.526 kb on + strand, within RR41_RS00865at 181.526 kb on + strand, within RR41_RS00865at 181.526 kb on + strand, within RR41_RS00865at 181.526 kb on + strand, within RR41_RS00865at 181.527 kb on - strand, within RR41_RS00865at 181.527 kb on - strand, within RR41_RS00865at 181.527 kb on - strand, within RR41_RS00865at 181.527 kb on - strand, within RR41_RS00865at 181.527 kb on - strand, within RR41_RS00865at 181.543 kb on + strand, within RR41_RS00865at 181.543 kb on + strand, within RR41_RS00865at 181.544 kb on - strand, within RR41_RS00865at 181.580 kb on - strand, within RR41_RS00865at 181.580 kb on - strand, within RR41_RS00865at 181.644 kb on - strand, within RR41_RS00865at 181.644 kb on - strand, within RR41_RS00865at 181.644 kb on - strand, within RR41_RS00865at 181.656 kb on - strand, within RR41_RS00865at 181.677 kb on + strand, within RR41_RS00865at 181.710 kb on - strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.714 kb on + strand, within RR41_RS00865at 181.715 kb on - strand, within RR41_RS00865at 181.715 kb on - strand, within RR41_RS00865at 181.715 kb on - strand, within RR41_RS00865at 181.715 kb on - strand, within RR41_RS00865at 181.778 kb on - strand, within RR41_RS00865at 181.778 kb on - strand, within RR41_RS00865at 181.778 kb on - strand, within RR41_RS00865at 181.781 kb on + strand, within RR41_RS00865at 181.781 kb on + strand, within RR41_RS00865at 181.800 kb on - strand, within RR41_RS00865at 181.809 kb on + strand, within RR41_RS00865at 181.809 kb on + strand, within RR41_RS00865at 181.809 kb on + strand, within RR41_RS00865at 181.809 kb on + strand, within RR41_RS00865at 181.835 kb on + strand, within RR41_RS00865at 181.857 kb on + strand, within RR41_RS00865at 181.866 kb on + strand, within RR41_RS00865at 181.866 kb on + strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.867 kb on - strand, within RR41_RS00865at 181.878 kb on - strand, within RR41_RS00865at 181.886 kb on + strand, within RR41_RS00865at 181.887 kb on - strand, within RR41_RS00865at 181.924 kb on + strand, within RR41_RS00865at 181.924 kb on + strand, within RR41_RS00865at 181.936 kb on + strand, within RR41_RS00865at 181.936 kb on + strand, within RR41_RS00865at 181.936 kb on + strand, within RR41_RS00865at 181.965 kb on - strand, within RR41_RS00865at 181.965 kb on - strand, within RR41_RS00865at 181.965 kb on - strand, within RR41_RS00865at 181.970 kb on + strand, within RR41_RS00865at 181.970 kb on + strand, within RR41_RS00865at 181.970 kb on + strand, within RR41_RS00865at 181.971 kb on - strand, within RR41_RS00865at 181.982 kb on + strand, within RR41_RS00865at 181.983 kb on - strand, within RR41_RS00865at 181.983 kb on - strand, within RR41_RS00865at 182.008 kb on + strandat 182.009 kb on - strandat 182.014 kb on - strandat 182.021 kb on - strandat 182.021 kb on - strandat 182.024 kb on + strandat 182.024 kb on + strandat 182.024 kb on + strandat 182.039 kb on + strandat 182.039 kb on + strandat 182.040 kb on - strandat 182.055 kb on + strandat 182.055 kb on + strandat 182.055 kb on + strandat 182.056 kb on - strandat 182.056 kb on - strandat 182.056 kb on - strandat 182.056 kb on - strandat 182.059 kb on + strandat 182.059 kb on + strandat 182.060 kb on - strandat 182.073 kb on + strandat 182.103 kb on + strandat 182.103 kb on + strandat 182.103 kb on + strandat 182.128 kb on + strandat 182.139 kb on + strandat 182.145 kb on - strandat 182.145 kb on - strandat 182.186 kb on + strandat 182.213 kb on + strandat 182.213 kb on + strandat 182.213 kb on + strandat 182.214 kb on - strandat 182.214 kb on - strandat 182.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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180,735 + -1.3
180,735 + +0.5
180,735 + +0.5
180,735 + -0.8
180,735 + +0.9
180,735 + +1.0
180,798 + -0.6
180,799 - +2.4
180,799 - +0.8
180,802 - +0.4
180,814 - -0.0
180,814 - -0.4
180,859 + -1.0
180,860 - +0.4
180,860 - -2.5
180,860 - +0.0
180,862 + -0.6
180,874 - -0.2
180,879 + RR41_RS00860 0.10 -2.1
180,880 - RR41_RS00860 0.10 +0.4
180,906 + RR41_RS00860 0.16 -0.2
180,907 - RR41_RS00860 0.16 -2.5
180,911 - RR41_RS00860 0.17 -0.9
180,911 - RR41_RS00860 0.17 -0.4
180,973 - RR41_RS00860 0.31 -1.9
180,973 - RR41_RS00860 0.31 -0.6
180,973 - RR41_RS00860 0.31 -2.2
180,973 - RR41_RS00860 0.31 -0.8
180,979 - RR41_RS00860 0.33 -1.8
181,208 - RR41_RS00860 0.85 -2.8
181,232 - +0.2
181,232 - +0.4
181,232 - +0.3
181,327 + +1.1
181,346 + +1.0
181,346 + -1.5
181,360 - -0.9
181,360 - -1.1
181,360 - +1.3
181,360 - -2.0
181,382 + +0.3
181,383 - +0.4
181,397 + +1.2
181,402 + -0.4
181,402 + -0.2
181,460 + RR41_RS00865 0.11 +2.1
181,472 + RR41_RS00865 0.13 +1.4
181,498 + RR41_RS00865 0.17 +0.8
181,510 + RR41_RS00865 0.18 -0.5
181,511 - RR41_RS00865 0.18 -1.2
181,524 + RR41_RS00865 0.20 -2.2
181,524 + RR41_RS00865 0.20 +1.4
181,524 + RR41_RS00865 0.20 -2.2
181,524 + RR41_RS00865 0.20 +2.2
181,524 + RR41_RS00865 0.20 +2.1
181,524 + RR41_RS00865 0.20 -0.7
181,524 + RR41_RS00865 0.20 -3.2
181,525 - RR41_RS00865 0.20 +1.3
181,525 - RR41_RS00865 0.20 +1.0
181,525 - RR41_RS00865 0.20 +1.2
181,525 - RR41_RS00865 0.20 +0.6
181,525 - RR41_RS00865 0.20 +0.1
181,525 - RR41_RS00865 0.20 -1.8
181,525 - RR41_RS00865 0.20 -3.3
181,525 - RR41_RS00865 0.20 -1.8
181,525 - RR41_RS00865 0.20 +0.1
181,526 + RR41_RS00865 0.21 +0.6
181,526 + RR41_RS00865 0.21 -4.3
181,526 + RR41_RS00865 0.21 -1.3
181,526 + RR41_RS00865 0.21 +0.1
181,527 - RR41_RS00865 0.21 +1.1
181,527 - RR41_RS00865 0.21 -2.2
181,527 - RR41_RS00865 0.21 -1.8
181,527 - RR41_RS00865 0.21 -0.4
181,527 - RR41_RS00865 0.21 -2.2
181,543 + RR41_RS00865 0.23 -3.4
181,543 + RR41_RS00865 0.23 -1.5
181,544 - RR41_RS00865 0.23 -0.2
181,580 - RR41_RS00865 0.28 +0.8
181,580 - RR41_RS00865 0.28 -1.8
181,644 - RR41_RS00865 0.38 +0.3
181,644 - RR41_RS00865 0.38 -3.0
181,644 - RR41_RS00865 0.38 +0.6
181,656 - RR41_RS00865 0.39 -4.0
181,677 + RR41_RS00865 0.42 -0.2
181,710 - RR41_RS00865 0.47 -0.1
181,714 + RR41_RS00865 0.48 -0.5
181,714 + RR41_RS00865 0.48 -0.8
181,714 + RR41_RS00865 0.48 -0.2
181,714 + RR41_RS00865 0.48 -0.8
181,714 + RR41_RS00865 0.48 +0.8
181,714 + RR41_RS00865 0.48 +2.2
181,714 + RR41_RS00865 0.48 +1.8
181,715 - RR41_RS00865 0.48 -0.4
181,715 - RR41_RS00865 0.48 +0.0
181,715 - RR41_RS00865 0.48 +0.2
181,715 - RR41_RS00865 0.48 -1.0
181,778 - RR41_RS00865 0.57 -0.5
181,778 - RR41_RS00865 0.57 -1.2
181,778 - RR41_RS00865 0.57 -0.2
181,781 + RR41_RS00865 0.57 -0.4
181,781 + RR41_RS00865 0.57 +1.6
181,800 - RR41_RS00865 0.60 -0.2
181,809 + RR41_RS00865 0.61 -1.5
181,809 + RR41_RS00865 0.61 -0.8
181,809 + RR41_RS00865 0.61 +0.6
181,809 + RR41_RS00865 0.61 -0.9
181,835 + RR41_RS00865 0.65 +0.2
181,857 + RR41_RS00865 0.68 -0.2
181,866 + RR41_RS00865 0.70 +0.3
181,866 + RR41_RS00865 0.70 +0.1
181,867 - RR41_RS00865 0.70 +1.4
181,867 - RR41_RS00865 0.70 -1.2
181,867 - RR41_RS00865 0.70 +0.5
181,867 - RR41_RS00865 0.70 +3.3
181,867 - RR41_RS00865 0.70 +0.2
181,867 - RR41_RS00865 0.70 +0.4
181,867 - RR41_RS00865 0.70 -2.5
181,878 - RR41_RS00865 0.71 -0.0
181,886 + RR41_RS00865 0.73 +0.2
181,887 - RR41_RS00865 0.73 -0.7
181,924 + RR41_RS00865 0.78 -2.8
181,924 + RR41_RS00865 0.78 -0.8
181,936 + RR41_RS00865 0.80 -0.8
181,936 + RR41_RS00865 0.80 -1.4
181,936 + RR41_RS00865 0.80 -1.2
181,965 - RR41_RS00865 0.84 -0.2
181,965 - RR41_RS00865 0.84 +0.4
181,965 - RR41_RS00865 0.84 +0.4
181,970 + RR41_RS00865 0.85 -1.2
181,970 + RR41_RS00865 0.85 -2.5
181,970 + RR41_RS00865 0.85 -0.1
181,971 - RR41_RS00865 0.85 -2.2
181,982 + RR41_RS00865 0.86 -3.2
181,983 - RR41_RS00865 0.87 -0.8
181,983 - RR41_RS00865 0.87 -0.2
182,008 + +0.8
182,009 - +0.8
182,014 - +1.1
182,021 - -0.0
182,021 - -1.8
182,024 + +1.4
182,024 + -1.2
182,024 + -2.0
182,039 + +2.1
182,039 + -1.2
182,040 - +2.1
182,055 + +0.8
182,055 + -1.2
182,055 + -3.4
182,056 - -2.4
182,056 - -2.8
182,056 - -3.5
182,056 - -1.0
182,059 + -0.2
182,059 + -0.7
182,060 - -0.2
182,073 + +1.1
182,103 + +0.4
182,103 + -0.7
182,103 + +0.2
182,128 + -0.3
182,139 + +0.0
182,145 - -1.4
182,145 - -2.1
182,186 + -4.1
182,213 + -2.4
182,213 + -0.9
182,213 + -0.1
182,214 - -1.0
182,214 - -0.4
182,214 - +0.7

Or see this region's nucleotide sequence