Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03627

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03626 and OHPLBJKB_03627 are separated by 166 nucleotidesOHPLBJKB_03627 and OHPLBJKB_03628 are separated by 65 nucleotides OHPLBJKB_03626: OHPLBJKB_03626 - 4-hydroxy-tetrahydrodipicolinate reductase, at 3,810,008 to 3,810,829 _03626 OHPLBJKB_03627: OHPLBJKB_03627 - Non-specific ribonucleoside hydrolase RihC, at 3,810,996 to 3,811,910 _03627 OHPLBJKB_03628: OHPLBJKB_03628 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,811,976 to 3,812,926 _03628 Position (kb) 3810 3811 3812Strain fitness (log2 ratio) -2 -1 0 1at 3810.922 kb on - strandat 3810.922 kb on - strandat 3811.068 kb on + strandat 3811.069 kb on - strandat 3811.069 kb on - strandat 3811.174 kb on - strand, within OHPLBJKB_03627at 3811.304 kb on + strand, within OHPLBJKB_03627at 3811.304 kb on + strand, within OHPLBJKB_03627at 3811.305 kb on - strand, within OHPLBJKB_03627at 3811.313 kb on - strand, within OHPLBJKB_03627at 3811.326 kb on + strand, within OHPLBJKB_03627at 3811.326 kb on + strand, within OHPLBJKB_03627at 3811.326 kb on + strand, within OHPLBJKB_03627at 3811.326 kb on + strand, within OHPLBJKB_03627at 3811.436 kb on + strand, within OHPLBJKB_03627at 3811.484 kb on + strand, within OHPLBJKB_03627at 3811.486 kb on + strand, within OHPLBJKB_03627at 3811.486 kb on + strand, within OHPLBJKB_03627at 3811.487 kb on - strand, within OHPLBJKB_03627at 3811.487 kb on - strand, within OHPLBJKB_03627at 3811.487 kb on - strand, within OHPLBJKB_03627at 3811.698 kb on + strand, within OHPLBJKB_03627

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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3,810,922 - +0.7
3,810,922 - +0.8
3,811,068 + -0.3
3,811,069 - -0.1
3,811,069 - -0.3
3,811,174 - OHPLBJKB_03627 0.19 -0.1
3,811,304 + OHPLBJKB_03627 0.34 -0.0
3,811,304 + OHPLBJKB_03627 0.34 -1.8
3,811,305 - OHPLBJKB_03627 0.34 -0.9
3,811,313 - OHPLBJKB_03627 0.35 -0.4
3,811,326 + OHPLBJKB_03627 0.36 +0.1
3,811,326 + OHPLBJKB_03627 0.36 +0.1
3,811,326 + OHPLBJKB_03627 0.36 +0.3
3,811,326 + OHPLBJKB_03627 0.36 +0.3
3,811,436 + OHPLBJKB_03627 0.48 -0.7
3,811,484 + OHPLBJKB_03627 0.53 -0.7
3,811,486 + OHPLBJKB_03627 0.54 +0.3
3,811,486 + OHPLBJKB_03627 0.54 +0.5
3,811,487 - OHPLBJKB_03627 0.54 -0.8
3,811,487 - OHPLBJKB_03627 0.54 +1.0
3,811,487 - OHPLBJKB_03627 0.54 +0.3
3,811,698 + OHPLBJKB_03627 0.77 +0.2

Or see this region's nucleotide sequence