Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03150

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03149 and OHPLBJKB_03150 are separated by 30 nucleotidesOHPLBJKB_03150 and OHPLBJKB_03151 are separated by 219 nucleotides OHPLBJKB_03149: OHPLBJKB_03149 - Outer membrane usher protein SfmD, at 3,280,801 to 3,283,410 _03149 OHPLBJKB_03150: OHPLBJKB_03150 - putative fimbrial chaperone SfmC, at 3,283,441 to 3,284,133 _03150 OHPLBJKB_03151: OHPLBJKB_03151 - putative fimbrial-like protein SfmA, at 3,284,353 to 3,284,895 _03151 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -2 -1 0 1 2at 3282.476 kb on + strand, within OHPLBJKB_03149at 3282.485 kb on + strand, within OHPLBJKB_03149at 3282.485 kb on + strand, within OHPLBJKB_03149at 3282.490 kb on - strand, within OHPLBJKB_03149at 3282.493 kb on - strand, within OHPLBJKB_03149at 3282.493 kb on - strand, within OHPLBJKB_03149at 3282.545 kb on - strand, within OHPLBJKB_03149at 3282.578 kb on + strand, within OHPLBJKB_03149at 3282.578 kb on + strand, within OHPLBJKB_03149at 3282.579 kb on - strand, within OHPLBJKB_03149at 3282.582 kb on + strand, within OHPLBJKB_03149at 3282.582 kb on + strand, within OHPLBJKB_03149at 3282.582 kb on + strand, within OHPLBJKB_03149at 3282.582 kb on + strand, within OHPLBJKB_03149at 3282.606 kb on + strand, within OHPLBJKB_03149at 3282.685 kb on - strand, within OHPLBJKB_03149at 3282.882 kb on + strand, within OHPLBJKB_03149at 3282.911 kb on + strand, within OHPLBJKB_03149at 3283.066 kb on - strand, within OHPLBJKB_03149at 3283.156 kb on + strandat 3283.201 kb on + strandat 3283.230 kb on + strandat 3283.230 kb on + strandat 3283.595 kb on - strand, within OHPLBJKB_03150at 3283.641 kb on + strand, within OHPLBJKB_03150at 3283.641 kb on + strand, within OHPLBJKB_03150at 3283.644 kb on - strand, within OHPLBJKB_03150at 3283.890 kb on + strand, within OHPLBJKB_03150at 3283.993 kb on - strand, within OHPLBJKB_03150at 3284.031 kb on + strand, within OHPLBJKB_03150at 3284.032 kb on - strand, within OHPLBJKB_03150at 3284.328 kb on - strandat 3284.370 kb on + strandat 3284.426 kb on + strand, within OHPLBJKB_03151at 3284.426 kb on + strand, within OHPLBJKB_03151at 3284.528 kb on - strand, within OHPLBJKB_03151at 3284.822 kb on - strand, within OHPLBJKB_03151at 3284.835 kb on - strand, within OHPLBJKB_03151at 3284.898 kb on - strandat 3284.898 kb on - strandat 3284.899 kb on + strandat 3284.899 kb on + strandat 3284.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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3,282,476 + OHPLBJKB_03149 0.64 -0.2
3,282,485 + OHPLBJKB_03149 0.65 -0.9
3,282,485 + OHPLBJKB_03149 0.65 -0.2
3,282,490 - OHPLBJKB_03149 0.65 -0.2
3,282,493 - OHPLBJKB_03149 0.65 -0.3
3,282,493 - OHPLBJKB_03149 0.65 +0.7
3,282,545 - OHPLBJKB_03149 0.67 -2.0
3,282,578 + OHPLBJKB_03149 0.68 -2.1
3,282,578 + OHPLBJKB_03149 0.68 +0.2
3,282,579 - OHPLBJKB_03149 0.68 -1.7
3,282,582 + OHPLBJKB_03149 0.68 +0.3
3,282,582 + OHPLBJKB_03149 0.68 +0.1
3,282,582 + OHPLBJKB_03149 0.68 +0.1
3,282,582 + OHPLBJKB_03149 0.68 +1.5
3,282,606 + OHPLBJKB_03149 0.69 +1.6
3,282,685 - OHPLBJKB_03149 0.72 -0.4
3,282,882 + OHPLBJKB_03149 0.80 -1.5
3,282,911 + OHPLBJKB_03149 0.81 +0.1
3,283,066 - OHPLBJKB_03149 0.87 -0.1
3,283,156 + +0.5
3,283,201 + +0.3
3,283,230 + -1.0
3,283,230 + +0.2
3,283,595 - OHPLBJKB_03150 0.22 -0.6
3,283,641 + OHPLBJKB_03150 0.29 +0.6
3,283,641 + OHPLBJKB_03150 0.29 +1.9
3,283,644 - OHPLBJKB_03150 0.29 -0.2
3,283,890 + OHPLBJKB_03150 0.65 -2.7
3,283,993 - OHPLBJKB_03150 0.80 +1.1
3,284,031 + OHPLBJKB_03150 0.85 +0.4
3,284,032 - OHPLBJKB_03150 0.85 -0.2
3,284,328 - -0.3
3,284,370 + +0.5
3,284,426 + OHPLBJKB_03151 0.13 -0.5
3,284,426 + OHPLBJKB_03151 0.13 -0.8
3,284,528 - OHPLBJKB_03151 0.32 -0.7
3,284,822 - OHPLBJKB_03151 0.86 -0.4
3,284,835 - OHPLBJKB_03151 0.89 -0.3
3,284,898 - +0.2
3,284,898 - -0.6
3,284,899 + -1.5
3,284,899 + -1.0
3,284,900 - +0.9

Or see this region's nucleotide sequence