Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02868

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02866 and OHPLBJKB_02867 are separated by 91 nucleotidesOHPLBJKB_02867 and OHPLBJKB_02868 are separated by 40 nucleotidesOHPLBJKB_02868 and OHPLBJKB_02869 are separated by 284 nucleotidesOHPLBJKB_02869 and OHPLBJKB_02870 are separated by 57 nucleotides OHPLBJKB_02866: OHPLBJKB_02866 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YbjI, at 2,987,672 to 2,988,487 _02866 OHPLBJKB_02867: OHPLBJKB_02867 - hypothetical protein, at 2,988,579 to 2,988,857 _02867 OHPLBJKB_02868: OHPLBJKB_02868 - Multidrug transporter MdfA, at 2,988,898 to 2,990,130 _02868 OHPLBJKB_02869: OHPLBJKB_02869 - Putative undecaprenyl-diphosphatase YbjG, at 2,990,415 to 2,991,011 _02869 OHPLBJKB_02870: OHPLBJKB_02870 - Deoxyribose operon repressor, at 2,991,069 to 2,991,827 _02870 Position (kb) 2988 2989 2990 2991Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2987.939 kb on - strand, within OHPLBJKB_02866at 2987.939 kb on - strand, within OHPLBJKB_02866at 2987.941 kb on + strand, within OHPLBJKB_02866at 2987.941 kb on + strand, within OHPLBJKB_02866at 2987.942 kb on - strand, within OHPLBJKB_02866at 2988.056 kb on + strand, within OHPLBJKB_02866at 2988.059 kb on + strand, within OHPLBJKB_02866at 2988.083 kb on - strand, within OHPLBJKB_02866at 2988.096 kb on + strand, within OHPLBJKB_02866at 2988.096 kb on + strand, within OHPLBJKB_02866at 2988.104 kb on - strand, within OHPLBJKB_02866at 2988.153 kb on + strand, within OHPLBJKB_02866at 2988.165 kb on + strand, within OHPLBJKB_02866at 2988.166 kb on - strand, within OHPLBJKB_02866at 2988.187 kb on + strand, within OHPLBJKB_02866at 2988.187 kb on + strand, within OHPLBJKB_02866at 2988.187 kb on + strand, within OHPLBJKB_02866at 2988.240 kb on + strand, within OHPLBJKB_02866at 2988.240 kb on + strand, within OHPLBJKB_02866at 2988.240 kb on + strand, within OHPLBJKB_02866at 2988.241 kb on - strand, within OHPLBJKB_02866at 2988.244 kb on + strand, within OHPLBJKB_02866at 2988.244 kb on + strand, within OHPLBJKB_02866at 2988.245 kb on - strand, within OHPLBJKB_02866at 2988.461 kb on - strandat 2988.534 kb on - strandat 2988.560 kb on + strandat 2988.620 kb on + strand, within OHPLBJKB_02867at 2988.683 kb on - strand, within OHPLBJKB_02867at 2988.683 kb on - strand, within OHPLBJKB_02867at 2988.744 kb on + strand, within OHPLBJKB_02867at 2988.745 kb on - strand, within OHPLBJKB_02867at 2988.787 kb on - strand, within OHPLBJKB_02867at 2988.809 kb on - strand, within OHPLBJKB_02867at 2988.809 kb on - strand, within OHPLBJKB_02867at 2988.856 kb on - strandat 2988.856 kb on - strandat 2988.935 kb on - strandat 2988.943 kb on - strandat 2988.991 kb on - strandat 2989.163 kb on + strand, within OHPLBJKB_02868at 2989.167 kb on + strand, within OHPLBJKB_02868at 2989.167 kb on + strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.168 kb on - strand, within OHPLBJKB_02868at 2989.171 kb on + strand, within OHPLBJKB_02868at 2989.189 kb on + strand, within OHPLBJKB_02868at 2989.190 kb on - strand, within OHPLBJKB_02868at 2989.190 kb on - strand, within OHPLBJKB_02868at 2989.190 kb on - strand, within OHPLBJKB_02868at 2989.193 kb on + strand, within OHPLBJKB_02868at 2989.194 kb on - strand, within OHPLBJKB_02868at 2989.210 kb on - strand, within OHPLBJKB_02868at 2989.245 kb on + strand, within OHPLBJKB_02868at 2989.263 kb on + strand, within OHPLBJKB_02868at 2989.263 kb on + strand, within OHPLBJKB_02868at 2989.264 kb on - strand, within OHPLBJKB_02868at 2989.268 kb on - strand, within OHPLBJKB_02868at 2989.268 kb on - strand, within OHPLBJKB_02868at 2989.279 kb on + strand, within OHPLBJKB_02868at 2989.279 kb on + strand, within OHPLBJKB_02868at 2989.280 kb on - strand, within OHPLBJKB_02868at 2989.361 kb on + strand, within OHPLBJKB_02868at 2989.361 kb on + strand, within OHPLBJKB_02868at 2989.367 kb on + strand, within OHPLBJKB_02868at 2989.494 kb on + strand, within OHPLBJKB_02868at 2989.494 kb on + strand, within OHPLBJKB_02868at 2989.494 kb on + strand, within OHPLBJKB_02868at 2989.495 kb on - strand, within OHPLBJKB_02868at 2989.495 kb on - strand, within OHPLBJKB_02868at 2989.495 kb on - strand, within OHPLBJKB_02868at 2989.496 kb on + strand, within OHPLBJKB_02868at 2989.496 kb on + strand, within OHPLBJKB_02868at 2989.497 kb on - strand, within OHPLBJKB_02868at 2989.536 kb on + strand, within OHPLBJKB_02868at 2989.537 kb on - strand, within OHPLBJKB_02868at 2989.667 kb on - strand, within OHPLBJKB_02868at 2989.713 kb on + strand, within OHPLBJKB_02868at 2989.713 kb on + strand, within OHPLBJKB_02868at 2989.781 kb on - strand, within OHPLBJKB_02868at 2989.897 kb on - strand, within OHPLBJKB_02868at 2989.928 kb on - strand, within OHPLBJKB_02868at 2989.950 kb on - strand, within OHPLBJKB_02868at 2989.992 kb on - strand, within OHPLBJKB_02868at 2990.013 kb on + strandat 2990.040 kb on + strandat 2990.042 kb on + strandat 2990.042 kb on + strandat 2990.042 kb on + strandat 2990.043 kb on - strandat 2990.043 kb on - strandat 2990.043 kb on - strandat 2990.043 kb on - strandat 2990.083 kb on + strandat 2990.116 kb on + strandat 2990.148 kb on - strandat 2990.168 kb on + strandat 2990.228 kb on + strandat 2990.228 kb on + strandat 2990.228 kb on + strandat 2990.229 kb on - strandat 2990.229 kb on - strandat 2990.243 kb on - strandat 2990.244 kb on + strandat 2990.244 kb on + strandat 2990.244 kb on + strandat 2990.244 kb on + strandat 2990.245 kb on - strandat 2990.245 kb on - strandat 2990.245 kb on - strandat 2990.245 kb on - strandat 2990.266 kb on + strandat 2990.275 kb on + strandat 2990.300 kb on - strandat 2990.322 kb on - strandat 2990.545 kb on + strand, within OHPLBJKB_02869at 2990.684 kb on + strand, within OHPLBJKB_02869at 2990.684 kb on + strand, within OHPLBJKB_02869at 2990.765 kb on - strand, within OHPLBJKB_02869at 2990.798 kb on - strand, within OHPLBJKB_02869at 2990.885 kb on + strand, within OHPLBJKB_02869at 2990.900 kb on + strand, within OHPLBJKB_02869at 2990.912 kb on + strand, within OHPLBJKB_02869at 2990.933 kb on + strand, within OHPLBJKB_02869at 2990.933 kb on + strand, within OHPLBJKB_02869at 2990.940 kb on + strand, within OHPLBJKB_02869at 2991.028 kb on + strandat 2991.028 kb on + strandat 2991.051 kb on + strandat 2991.051 kb on + strandat 2991.052 kb on - strandat 2991.056 kb on - strandat 2991.056 kb on - strandat 2991.128 kb on + strandat 2991.128 kb on + strandat 2991.128 kb on + strandat 2991.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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2,987,939 - OHPLBJKB_02866 0.33 -1.0
2,987,939 - OHPLBJKB_02866 0.33 -1.4
2,987,941 + OHPLBJKB_02866 0.33 +0.4
2,987,941 + OHPLBJKB_02866 0.33 +0.2
2,987,942 - OHPLBJKB_02866 0.33 -0.1
2,988,056 + OHPLBJKB_02866 0.47 -0.5
2,988,059 + OHPLBJKB_02866 0.47 +0.3
2,988,083 - OHPLBJKB_02866 0.50 -0.3
2,988,096 + OHPLBJKB_02866 0.52 -0.2
2,988,096 + OHPLBJKB_02866 0.52 +0.1
2,988,104 - OHPLBJKB_02866 0.53 +0.5
2,988,153 + OHPLBJKB_02866 0.59 -0.5
2,988,165 + OHPLBJKB_02866 0.60 -0.6
2,988,166 - OHPLBJKB_02866 0.61 +0.1
2,988,187 + OHPLBJKB_02866 0.63 +0.0
2,988,187 + OHPLBJKB_02866 0.63 +0.5
2,988,187 + OHPLBJKB_02866 0.63 +1.0
2,988,240 + OHPLBJKB_02866 0.70 +0.3
2,988,240 + OHPLBJKB_02866 0.70 -0.4
2,988,240 + OHPLBJKB_02866 0.70 -0.7
2,988,241 - OHPLBJKB_02866 0.70 -0.2
2,988,244 + OHPLBJKB_02866 0.70 -0.8
2,988,244 + OHPLBJKB_02866 0.70 +1.4
2,988,245 - OHPLBJKB_02866 0.70 +0.1
2,988,461 - -1.1
2,988,534 - -0.4
2,988,560 + -0.2
2,988,620 + OHPLBJKB_02867 0.15 +0.1
2,988,683 - OHPLBJKB_02867 0.37 -1.1
2,988,683 - OHPLBJKB_02867 0.37 +0.1
2,988,744 + OHPLBJKB_02867 0.59 +0.4
2,988,745 - OHPLBJKB_02867 0.59 +0.5
2,988,787 - OHPLBJKB_02867 0.75 -1.1
2,988,809 - OHPLBJKB_02867 0.82 +0.4
2,988,809 - OHPLBJKB_02867 0.82 +1.2
2,988,856 - -1.3
2,988,856 - +0.3
2,988,935 - -0.1
2,988,943 - -0.6
2,988,991 - -0.7
2,989,163 + OHPLBJKB_02868 0.21 -0.6
2,989,167 + OHPLBJKB_02868 0.22 -0.0
2,989,167 + OHPLBJKB_02868 0.22 +2.0
2,989,168 - OHPLBJKB_02868 0.22 -0.6
2,989,168 - OHPLBJKB_02868 0.22 -0.3
2,989,168 - OHPLBJKB_02868 0.22 +3.0
2,989,168 - OHPLBJKB_02868 0.22 +0.2
2,989,168 - OHPLBJKB_02868 0.22 +0.4
2,989,168 - OHPLBJKB_02868 0.22 -0.0
2,989,168 - OHPLBJKB_02868 0.22 +0.0
2,989,171 + OHPLBJKB_02868 0.22 -1.2
2,989,189 + OHPLBJKB_02868 0.24 -0.2
2,989,190 - OHPLBJKB_02868 0.24 +0.3
2,989,190 - OHPLBJKB_02868 0.24 +0.7
2,989,190 - OHPLBJKB_02868 0.24 +1.5
2,989,193 + OHPLBJKB_02868 0.24 -0.7
2,989,194 - OHPLBJKB_02868 0.24 +0.2
2,989,210 - OHPLBJKB_02868 0.25 -0.7
2,989,245 + OHPLBJKB_02868 0.28 +1.6
2,989,263 + OHPLBJKB_02868 0.30 -0.1
2,989,263 + OHPLBJKB_02868 0.30 +0.4
2,989,264 - OHPLBJKB_02868 0.30 +0.3
2,989,268 - OHPLBJKB_02868 0.30 -0.6
2,989,268 - OHPLBJKB_02868 0.30 +0.9
2,989,279 + OHPLBJKB_02868 0.31 +0.8
2,989,279 + OHPLBJKB_02868 0.31 -1.2
2,989,280 - OHPLBJKB_02868 0.31 +0.3
2,989,361 + OHPLBJKB_02868 0.38 +0.8
2,989,361 + OHPLBJKB_02868 0.38 -0.1
2,989,367 + OHPLBJKB_02868 0.38 +0.0
2,989,494 + OHPLBJKB_02868 0.48 -1.0
2,989,494 + OHPLBJKB_02868 0.48 +0.6
2,989,494 + OHPLBJKB_02868 0.48 -0.3
2,989,495 - OHPLBJKB_02868 0.48 +1.0
2,989,495 - OHPLBJKB_02868 0.48 +0.8
2,989,495 - OHPLBJKB_02868 0.48 -0.6
2,989,496 + OHPLBJKB_02868 0.48 -0.6
2,989,496 + OHPLBJKB_02868 0.48 +0.5
2,989,497 - OHPLBJKB_02868 0.49 +0.1
2,989,536 + OHPLBJKB_02868 0.52 +0.1
2,989,537 - OHPLBJKB_02868 0.52 -0.3
2,989,667 - OHPLBJKB_02868 0.62 +1.1
2,989,713 + OHPLBJKB_02868 0.66 -0.5
2,989,713 + OHPLBJKB_02868 0.66 -0.2
2,989,781 - OHPLBJKB_02868 0.72 -0.2
2,989,897 - OHPLBJKB_02868 0.81 +0.6
2,989,928 - OHPLBJKB_02868 0.84 +1.1
2,989,950 - OHPLBJKB_02868 0.85 -0.3
2,989,992 - OHPLBJKB_02868 0.89 -0.6
2,990,013 + -3.3
2,990,040 + -0.4
2,990,042 + -0.3
2,990,042 + -1.4
2,990,042 + +0.1
2,990,043 - -0.3
2,990,043 - +0.3
2,990,043 - -1.0
2,990,043 - -1.2
2,990,083 + -1.5
2,990,116 + -0.2
2,990,148 - +0.3
2,990,168 + -0.5
2,990,228 + +0.7
2,990,228 + +0.4
2,990,228 + +0.3
2,990,229 - +0.4
2,990,229 - +0.4
2,990,243 - -0.5
2,990,244 + +1.4
2,990,244 + -0.1
2,990,244 + -0.6
2,990,244 + -1.5
2,990,245 - -0.0
2,990,245 - -0.6
2,990,245 - -0.3
2,990,245 - +0.4
2,990,266 + +2.0
2,990,275 + -1.2
2,990,300 - -1.3
2,990,322 - -0.7
2,990,545 + OHPLBJKB_02869 0.22 +0.0
2,990,684 + OHPLBJKB_02869 0.45 -0.7
2,990,684 + OHPLBJKB_02869 0.45 -0.6
2,990,765 - OHPLBJKB_02869 0.59 +0.6
2,990,798 - OHPLBJKB_02869 0.64 -0.5
2,990,885 + OHPLBJKB_02869 0.79 -0.4
2,990,900 + OHPLBJKB_02869 0.81 +0.2
2,990,912 + OHPLBJKB_02869 0.83 +0.9
2,990,933 + OHPLBJKB_02869 0.87 -0.3
2,990,933 + OHPLBJKB_02869 0.87 -1.3
2,990,940 + OHPLBJKB_02869 0.88 -0.0
2,991,028 + -1.1
2,991,028 + -0.3
2,991,051 + +0.2
2,991,051 + -0.1
2,991,052 - -0.3
2,991,056 - -0.2
2,991,056 - -1.2
2,991,128 + +0.1
2,991,128 + -0.6
2,991,128 + +0.7
2,991,129 - +0.4

Or see this region's nucleotide sequence