Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02746

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02745 and OHPLBJKB_02746 overlap by 4 nucleotidesOHPLBJKB_02746 and OHPLBJKB_02747 are separated by 135 nucleotidesOHPLBJKB_02747 and OHPLBJKB_02748 overlap by 24 nucleotides OHPLBJKB_02745: OHPLBJKB_02745 - Chromosome partition protein MukF, at 2,866,660 to 2,867,982 _02745 OHPLBJKB_02746: OHPLBJKB_02746 - tRNA 5-carboxymethoxyuridine methyltransferase, at 2,867,979 to 2,868,764 _02746 OHPLBJKB_02747: OHPLBJKB_02747 - hypothetical protein, at 2,868,900 to 2,869,679 _02747 OHPLBJKB_02748: OHPLBJKB_02748 - hypothetical protein, at 2,869,656 to 2,870,549 _02748 Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -1 0 1at 2868.024 kb on - strandat 2868.024 kb on - strandat 2868.024 kb on - strandat 2868.026 kb on - strandat 2868.039 kb on - strandat 2868.042 kb on - strandat 2868.044 kb on - strandat 2868.044 kb on - strandat 2868.044 kb on - strandat 2868.044 kb on - strandat 2868.073 kb on - strand, within OHPLBJKB_02746at 2868.082 kb on - strand, within OHPLBJKB_02746at 2868.125 kb on - strand, within OHPLBJKB_02746at 2868.191 kb on - strand, within OHPLBJKB_02746at 2868.291 kb on - strand, within OHPLBJKB_02746at 2868.291 kb on - strand, within OHPLBJKB_02746at 2868.317 kb on - strand, within OHPLBJKB_02746at 2868.317 kb on - strand, within OHPLBJKB_02746at 2868.472 kb on - strand, within OHPLBJKB_02746at 2868.474 kb on - strand, within OHPLBJKB_02746at 2868.741 kb on - strandat 2868.810 kb on - strandat 2868.810 kb on - strandat 2868.810 kb on - strandat 2868.849 kb on + strandat 2868.849 kb on + strandat 2868.850 kb on - strandat 2868.872 kb on + strandat 2868.872 kb on + strandat 2868.872 kb on + strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.908 kb on + strandat 2868.933 kb on - strandat 2868.933 kb on - strandat 2868.966 kb on - strandat 2869.025 kb on + strand, within OHPLBJKB_02747at 2869.029 kb on - strand, within OHPLBJKB_02747at 2869.121 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.143 kb on - strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.166 kb on + strand, within OHPLBJKB_02747at 2869.167 kb on - strand, within OHPLBJKB_02747at 2869.167 kb on - strand, within OHPLBJKB_02747at 2869.197 kb on - strand, within OHPLBJKB_02747at 2869.208 kb on + strand, within OHPLBJKB_02747at 2869.321 kb on + strand, within OHPLBJKB_02747at 2869.322 kb on - strand, within OHPLBJKB_02747at 2869.322 kb on - strand, within OHPLBJKB_02747at 2869.504 kb on + strand, within OHPLBJKB_02747at 2869.710 kb on - strandat 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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2,868,024 - -0.5
2,868,024 - -1.0
2,868,024 - +0.1
2,868,026 - +0.6
2,868,039 - +0.9
2,868,042 - -0.2
2,868,044 - +0.9
2,868,044 - -0.7
2,868,044 - +1.5
2,868,044 - -0.1
2,868,073 - OHPLBJKB_02746 0.12 -0.0
2,868,082 - OHPLBJKB_02746 0.13 -0.4
2,868,125 - OHPLBJKB_02746 0.19 -0.1
2,868,191 - OHPLBJKB_02746 0.27 -0.1
2,868,291 - OHPLBJKB_02746 0.40 -0.4
2,868,291 - OHPLBJKB_02746 0.40 +0.5
2,868,317 - OHPLBJKB_02746 0.43 -0.7
2,868,317 - OHPLBJKB_02746 0.43 -1.1
2,868,472 - OHPLBJKB_02746 0.63 +0.7
2,868,474 - OHPLBJKB_02746 0.63 -1.4
2,868,741 - -0.4
2,868,810 - +0.8
2,868,810 - -0.6
2,868,810 - +0.1
2,868,849 + +0.2
2,868,849 + -0.8
2,868,850 - -0.2
2,868,872 + -0.3
2,868,872 + -0.4
2,868,872 + -0.8
2,868,873 - +1.2
2,868,873 - -0.5
2,868,873 - -0.1
2,868,873 - +0.1
2,868,873 - +0.2
2,868,873 - +0.8
2,868,873 - -0.1
2,868,873 - -0.4
2,868,873 - -0.7
2,868,875 - -0.3
2,868,875 - +0.2
2,868,875 - -0.1
2,868,875 - -0.1
2,868,875 - +0.5
2,868,875 - -0.7
2,868,875 - -1.2
2,868,908 + +0.2
2,868,933 - -0.4
2,868,933 - -1.4
2,868,966 - -0.0
2,869,025 + OHPLBJKB_02747 0.16 +0.5
2,869,029 - OHPLBJKB_02747 0.17 -0.2
2,869,121 + OHPLBJKB_02747 0.28 -0.1
2,869,140 + OHPLBJKB_02747 0.31 +0.1
2,869,140 + OHPLBJKB_02747 0.31 -0.6
2,869,140 + OHPLBJKB_02747 0.31 -0.8
2,869,141 - OHPLBJKB_02747 0.31 -0.3
2,869,141 - OHPLBJKB_02747 0.31 -0.9
2,869,141 - OHPLBJKB_02747 0.31 +0.2
2,869,141 - OHPLBJKB_02747 0.31 -0.5
2,869,141 - OHPLBJKB_02747 0.31 +0.2
2,869,141 - OHPLBJKB_02747 0.31 -0.6
2,869,143 - OHPLBJKB_02747 0.31 -1.7
2,869,164 + OHPLBJKB_02747 0.34 +0.2
2,869,164 + OHPLBJKB_02747 0.34 +0.4
2,869,164 + OHPLBJKB_02747 0.34 -0.8
2,869,164 + OHPLBJKB_02747 0.34 +1.4
2,869,166 + OHPLBJKB_02747 0.34 -0.4
2,869,167 - OHPLBJKB_02747 0.34 -0.4
2,869,167 - OHPLBJKB_02747 0.34 -1.0
2,869,197 - OHPLBJKB_02747 0.38 +0.6
2,869,208 + OHPLBJKB_02747 0.39 +0.3
2,869,321 + OHPLBJKB_02747 0.54 +0.3
2,869,322 - OHPLBJKB_02747 0.54 +0.9
2,869,322 - OHPLBJKB_02747 0.54 -1.6
2,869,504 + OHPLBJKB_02747 0.77 -0.8
2,869,710 - -1.5
2,869,756 + OHPLBJKB_02748 0.11 -1.1
2,869,756 + OHPLBJKB_02748 0.11 -1.2
2,869,756 + OHPLBJKB_02748 0.11 +0.7
2,869,756 + OHPLBJKB_02748 0.11 -0.4
2,869,757 - OHPLBJKB_02748 0.11 -0.3
2,869,757 - OHPLBJKB_02748 0.11 -1.4
2,869,757 - OHPLBJKB_02748 0.11 +0.9

Or see this region's nucleotide sequence