Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01558

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01557 and OHPLBJKB_01558 are separated by 257 nucleotidesOHPLBJKB_01558 and OHPLBJKB_01559 are separated by 16 nucleotides OHPLBJKB_01557: OHPLBJKB_01557 - S-formylglutathione hydrolase YeiG, at 1,623,653 to 1,624,489 _01557 OHPLBJKB_01558: OHPLBJKB_01558 - GTP cyclohydrolase 1, at 1,624,747 to 1,625,415 _01558 OHPLBJKB_01559: OHPLBJKB_01559 - hypothetical protein, at 1,625,432 to 1,626,589 _01559 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1623.876 kb on + strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.877 kb on - strand, within OHPLBJKB_01557at 1623.926 kb on + strand, within OHPLBJKB_01557at 1623.927 kb on - strand, within OHPLBJKB_01557at 1623.930 kb on + strand, within OHPLBJKB_01557at 1623.930 kb on + strand, within OHPLBJKB_01557at 1623.930 kb on + strand, within OHPLBJKB_01557at 1623.930 kb on + strand, within OHPLBJKB_01557at 1623.930 kb on + strand, within OHPLBJKB_01557at 1623.931 kb on - strand, within OHPLBJKB_01557at 1624.005 kb on + strand, within OHPLBJKB_01557at 1624.005 kb on + strand, within OHPLBJKB_01557at 1624.005 kb on + strand, within OHPLBJKB_01557at 1624.006 kb on - strand, within OHPLBJKB_01557at 1624.006 kb on - strand, within OHPLBJKB_01557at 1624.132 kb on - strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.137 kb on + strand, within OHPLBJKB_01557at 1624.138 kb on - strand, within OHPLBJKB_01557at 1624.138 kb on - strand, within OHPLBJKB_01557at 1624.138 kb on - strand, within OHPLBJKB_01557at 1624.182 kb on + strand, within OHPLBJKB_01557at 1624.182 kb on + strand, within OHPLBJKB_01557at 1624.396 kb on + strand, within OHPLBJKB_01557at 1624.396 kb on + strand, within OHPLBJKB_01557at 1624.419 kb on - strandat 1624.569 kb on + strandat 1624.618 kb on + strandat 1624.618 kb on + strandat 1624.624 kb on - strandat 1624.647 kb on + strandat 1624.691 kb on + strandat 1624.695 kb on - strandat 1625.494 kb on - strandat 1625.528 kb on + strandat 1625.528 kb on + strandat 1625.533 kb on + strandat 1625.534 kb on - strandat 1625.558 kb on - strand, within OHPLBJKB_01559at 1625.558 kb on - strand, within OHPLBJKB_01559at 1625.778 kb on + strand, within OHPLBJKB_01559at 1625.815 kb on - strand, within OHPLBJKB_01559at 1625.827 kb on + strand, within OHPLBJKB_01559at 1625.828 kb on - strand, within OHPLBJKB_01559at 1625.831 kb on - strand, within OHPLBJKB_01559at 1625.846 kb on + strand, within OHPLBJKB_01559at 1625.949 kb on - strand, within OHPLBJKB_01559at 1626.032 kb on + strand, within OHPLBJKB_01559at 1626.111 kb on + strand, within OHPLBJKB_01559at 1626.225 kb on + strand, within OHPLBJKB_01559at 1626.365 kb on + strand, within OHPLBJKB_01559at 1626.365 kb on + strand, within OHPLBJKB_01559at 1626.366 kb on - strand, within OHPLBJKB_01559at 1626.370 kb on - strand, within OHPLBJKB_01559at 1626.370 kb on - strand, within OHPLBJKB_01559at 1626.370 kb on - strand, within OHPLBJKB_01559

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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1,623,876 + OHPLBJKB_01557 0.27 +1.2
1,623,877 - OHPLBJKB_01557 0.27 -0.4
1,623,877 - OHPLBJKB_01557 0.27 +0.1
1,623,877 - OHPLBJKB_01557 0.27 +0.4
1,623,877 - OHPLBJKB_01557 0.27 -1.5
1,623,877 - OHPLBJKB_01557 0.27 +0.5
1,623,877 - OHPLBJKB_01557 0.27 +1.3
1,623,926 + OHPLBJKB_01557 0.33 +0.4
1,623,927 - OHPLBJKB_01557 0.33 +0.3
1,623,930 + OHPLBJKB_01557 0.33 -0.6
1,623,930 + OHPLBJKB_01557 0.33 -0.2
1,623,930 + OHPLBJKB_01557 0.33 -0.8
1,623,930 + OHPLBJKB_01557 0.33 +1.2
1,623,930 + OHPLBJKB_01557 0.33 -1.0
1,623,931 - OHPLBJKB_01557 0.33 -0.9
1,624,005 + OHPLBJKB_01557 0.42 +0.1
1,624,005 + OHPLBJKB_01557 0.42 -0.5
1,624,005 + OHPLBJKB_01557 0.42 -0.2
1,624,006 - OHPLBJKB_01557 0.42 +0.6
1,624,006 - OHPLBJKB_01557 0.42 +0.5
1,624,132 - OHPLBJKB_01557 0.57 -0.4
1,624,137 + OHPLBJKB_01557 0.58 -0.3
1,624,137 + OHPLBJKB_01557 0.58 +0.4
1,624,137 + OHPLBJKB_01557 0.58 +0.5
1,624,137 + OHPLBJKB_01557 0.58 +0.6
1,624,137 + OHPLBJKB_01557 0.58 +0.4
1,624,137 + OHPLBJKB_01557 0.58 +0.3
1,624,138 - OHPLBJKB_01557 0.58 +0.2
1,624,138 - OHPLBJKB_01557 0.58 -0.9
1,624,138 - OHPLBJKB_01557 0.58 -0.6
1,624,182 + OHPLBJKB_01557 0.63 -1.2
1,624,182 + OHPLBJKB_01557 0.63 -0.7
1,624,396 + OHPLBJKB_01557 0.89 +0.2
1,624,396 + OHPLBJKB_01557 0.89 +0.8
1,624,419 - -0.6
1,624,569 + +0.7
1,624,618 + -0.5
1,624,618 + -0.4
1,624,624 - -0.1
1,624,647 + -0.9
1,624,691 + -0.6
1,624,695 - -1.4
1,625,494 - -1.2
1,625,528 + -0.2
1,625,528 + +0.6
1,625,533 + +0.8
1,625,534 - -0.4
1,625,558 - OHPLBJKB_01559 0.11 -1.3
1,625,558 - OHPLBJKB_01559 0.11 -1.4
1,625,778 + OHPLBJKB_01559 0.30 +0.3
1,625,815 - OHPLBJKB_01559 0.33 -0.8
1,625,827 + OHPLBJKB_01559 0.34 +0.6
1,625,828 - OHPLBJKB_01559 0.34 -0.4
1,625,831 - OHPLBJKB_01559 0.34 -0.3
1,625,846 + OHPLBJKB_01559 0.36 +0.1
1,625,949 - OHPLBJKB_01559 0.45 -0.8
1,626,032 + OHPLBJKB_01559 0.52 +0.4
1,626,111 + OHPLBJKB_01559 0.59 +0.4
1,626,225 + OHPLBJKB_01559 0.68 +0.0
1,626,365 + OHPLBJKB_01559 0.81 +0.4
1,626,365 + OHPLBJKB_01559 0.81 -0.7
1,626,366 - OHPLBJKB_01559 0.81 +0.4
1,626,370 - OHPLBJKB_01559 0.81 -0.4
1,626,370 - OHPLBJKB_01559 0.81 -0.6
1,626,370 - OHPLBJKB_01559 0.81 -1.4

Or see this region's nucleotide sequence