Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00547

Experiment: HB-P24 MOI10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00544 and OHPLBJKB_00545 overlap by 14 nucleotidesOHPLBJKB_00545 and OHPLBJKB_00546 are separated by 41 nucleotidesOHPLBJKB_00546 and OHPLBJKB_00547 overlap by 21 nucleotidesOHPLBJKB_00547 and OHPLBJKB_00548 are separated by 127 nucleotidesOHPLBJKB_00548 and OHPLBJKB_00549 are separated by 72 nucleotides OHPLBJKB_00544: OHPLBJKB_00544 - hypothetical protein, at 559,217 to 559,720 _00544 OHPLBJKB_00545: OHPLBJKB_00545 - hypothetical protein, at 559,707 to 560,018 _00545 OHPLBJKB_00546: OHPLBJKB_00546 - hypothetical protein, at 560,060 to 560,503 _00546 OHPLBJKB_00547: OHPLBJKB_00547 - Protein/nucleic acid deglycase 2, at 560,483 to 561,001 _00547 OHPLBJKB_00548: OHPLBJKB_00548 - hypothetical protein, at 561,129 to 561,764 _00548 OHPLBJKB_00549: OHPLBJKB_00549 - hypothetical protein, at 561,837 to 562,877 _00549 Position (kb) 560 561 562Strain fitness (log2 ratio) -2 -1 0 1at 559.496 kb on + strand, within OHPLBJKB_00544at 559.529 kb on + strand, within OHPLBJKB_00544at 559.644 kb on + strand, within OHPLBJKB_00544at 559.644 kb on + strand, within OHPLBJKB_00544at 559.645 kb on - strand, within OHPLBJKB_00544at 559.694 kb on + strandat 559.718 kb on + strandat 559.718 kb on + strandat 559.719 kb on - strandat 559.960 kb on + strand, within OHPLBJKB_00545at 559.961 kb on - strand, within OHPLBJKB_00545at 559.961 kb on - strand, within OHPLBJKB_00545at 560.043 kb on + strandat 560.045 kb on + strandat 560.045 kb on + strandat 560.046 kb on - strandat 560.159 kb on + strand, within OHPLBJKB_00546at 560.160 kb on - strand, within OHPLBJKB_00546at 560.160 kb on - strand, within OHPLBJKB_00546at 560.286 kb on + strand, within OHPLBJKB_00546at 560.287 kb on - strand, within OHPLBJKB_00546at 560.305 kb on + strand, within OHPLBJKB_00546at 560.306 kb on - strand, within OHPLBJKB_00546at 560.360 kb on + strand, within OHPLBJKB_00546at 560.360 kb on + strand, within OHPLBJKB_00546at 560.361 kb on - strand, within OHPLBJKB_00546at 560.587 kb on - strand, within OHPLBJKB_00547at 560.617 kb on + strand, within OHPLBJKB_00547at 560.766 kb on + strand, within OHPLBJKB_00547at 560.766 kb on + strand, within OHPLBJKB_00547at 560.767 kb on - strand, within OHPLBJKB_00547at 560.836 kb on + strand, within OHPLBJKB_00547at 560.902 kb on + strand, within OHPLBJKB_00547at 560.902 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547at 561.057 kb on + strandat 561.057 kb on + strandat 561.057 kb on + strandat 561.057 kb on + strandat 561.058 kb on - strandat 561.058 kb on - strandat 561.058 kb on - strandat 561.070 kb on - strandat 561.070 kb on - strandat 561.070 kb on - strandat 561.072 kb on + strandat 561.073 kb on - strandat 561.139 kb on + strandat 561.378 kb on - strand, within OHPLBJKB_00548at 561.391 kb on - strand, within OHPLBJKB_00548at 561.443 kb on + strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.493 kb on - strand, within OHPLBJKB_00548at 561.526 kb on + strand, within OHPLBJKB_00548at 561.731 kb on - strandat 561.763 kb on - strandat 561.763 kb on - strandat 561.795 kb on - strandat 561.820 kb on + strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.837 kb on - strandat 561.927 kb on + strandat 561.928 kb on - strandat 561.945 kb on + strand, within OHPLBJKB_00549at 561.945 kb on + strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.949 kb on - strand, within OHPLBJKB_00549at 561.983 kb on + strand, within OHPLBJKB_00549

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
remove
559,496 + OHPLBJKB_00544 0.55 -0.3
559,529 + OHPLBJKB_00544 0.62 +0.0
559,644 + OHPLBJKB_00544 0.85 +0.0
559,644 + OHPLBJKB_00544 0.85 +0.7
559,645 - OHPLBJKB_00544 0.85 -0.9
559,694 + +0.1
559,718 + -0.2
559,718 + +1.0
559,719 - -2.0
559,960 + OHPLBJKB_00545 0.81 +0.2
559,961 - OHPLBJKB_00545 0.81 +1.4
559,961 - OHPLBJKB_00545 0.81 +0.1
560,043 + +1.5
560,045 + +0.6
560,045 + -0.1
560,046 - -0.1
560,159 + OHPLBJKB_00546 0.22 -0.4
560,160 - OHPLBJKB_00546 0.23 +0.3
560,160 - OHPLBJKB_00546 0.23 -1.2
560,286 + OHPLBJKB_00546 0.51 +1.2
560,287 - OHPLBJKB_00546 0.51 -0.3
560,305 + OHPLBJKB_00546 0.55 -2.2
560,306 - OHPLBJKB_00546 0.55 -0.7
560,360 + OHPLBJKB_00546 0.68 +0.4
560,360 + OHPLBJKB_00546 0.68 +0.2
560,361 - OHPLBJKB_00546 0.68 +0.2
560,587 - OHPLBJKB_00547 0.20 +0.1
560,617 + OHPLBJKB_00547 0.26 -0.0
560,766 + OHPLBJKB_00547 0.55 -1.4
560,766 + OHPLBJKB_00547 0.55 -0.1
560,767 - OHPLBJKB_00547 0.55 -0.9
560,836 + OHPLBJKB_00547 0.68 -0.3
560,902 + OHPLBJKB_00547 0.81 -0.7
560,902 + OHPLBJKB_00547 0.81 +0.0
560,947 + OHPLBJKB_00547 0.89 +0.5
560,947 + OHPLBJKB_00547 0.89 -0.8
560,948 - OHPLBJKB_00547 0.90 +0.1
560,948 - OHPLBJKB_00547 0.90 -1.2
561,057 + -0.8
561,057 + +0.2
561,057 + +0.1
561,057 + +0.2
561,058 - +0.1
561,058 - -0.1
561,058 - +0.1
561,070 - +0.8
561,070 - +0.4
561,070 - +0.3
561,072 + +0.5
561,073 - +0.4
561,139 + -0.2
561,378 - OHPLBJKB_00548 0.39 -0.8
561,391 - OHPLBJKB_00548 0.41 -0.2
561,443 + OHPLBJKB_00548 0.49 -1.1
561,444 - OHPLBJKB_00548 0.50 -2.0
561,444 - OHPLBJKB_00548 0.50 -0.1
561,444 - OHPLBJKB_00548 0.50 +0.2
561,444 - OHPLBJKB_00548 0.50 +0.6
561,493 - OHPLBJKB_00548 0.57 -0.2
561,526 + OHPLBJKB_00548 0.62 +0.9
561,731 - +0.7
561,763 - -0.8
561,763 - +1.7
561,795 - +0.9
561,820 + -0.1
561,821 - -0.0
561,821 - -0.9
561,821 - -0.6
561,821 - -0.1
561,837 - -0.2
561,927 + -0.2
561,928 - -0.3
561,945 + OHPLBJKB_00549 0.10 +0.9
561,945 + OHPLBJKB_00549 0.10 -0.0
561,946 - OHPLBJKB_00549 0.10 +0.5
561,946 - OHPLBJKB_00549 0.10 -0.4
561,946 - OHPLBJKB_00549 0.10 +0.7
561,946 - OHPLBJKB_00549 0.10 +0.2
561,946 - OHPLBJKB_00549 0.10 +0.6
561,946 - OHPLBJKB_00549 0.10 -0.1
561,948 + OHPLBJKB_00549 0.11 +0.5
561,948 + OHPLBJKB_00549 0.11 -0.1
561,948 + OHPLBJKB_00549 0.11 +0.7
561,949 - OHPLBJKB_00549 0.11 +0.9
561,983 + OHPLBJKB_00549 0.14 -0.0

Or see this region's nucleotide sequence