Experiment: HB-P24 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00225 and OHPLBJKB_00226 overlap by 4 nucleotides OHPLBJKB_00226 and OHPLBJKB_00227 overlap by 1 nucleotides OHPLBJKB_00227 and OHPLBJKB_00228 are separated by 110 nucleotides OHPLBJKB_00228 and OHPLBJKB_00229 are separated by 54 nucleotides
OHPLBJKB_00225: OHPLBJKB_00225 - Nickel transport system permease protein NikC, at 247,616 to 248,449
_00225
OHPLBJKB_00226: OHPLBJKB_00226 - Nickel transport system permease protein NikB, at 248,446 to 249,390
_00226
OHPLBJKB_00227: OHPLBJKB_00227 - Nickel-binding periplasmic protein, at 249,390 to 250,964
_00227
OHPLBJKB_00228: OHPLBJKB_00228 - hypothetical protein, at 251,075 to 251,662
_00228
OHPLBJKB_00229: OHPLBJKB_00229 - Putative transport protein YhhT, at 251,717 to 252,766
_00229
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 248.518 kb on - strand at 248.551 kb on - strand, within OHPLBJKB_00226 at 248.796 kb on + strand, within OHPLBJKB_00226 at 248.797 kb on - strand, within OHPLBJKB_00226 at 248.797 kb on - strand, within OHPLBJKB_00226 at 248.835 kb on + strand, within OHPLBJKB_00226 at 248.835 kb on + strand, within OHPLBJKB_00226 at 248.910 kb on - strand, within OHPLBJKB_00226 at 249.058 kb on + strand, within OHPLBJKB_00226 at 249.058 kb on + strand, within OHPLBJKB_00226 at 249.061 kb on + strand, within OHPLBJKB_00226 at 249.147 kb on + strand, within OHPLBJKB_00226 at 249.197 kb on + strand, within OHPLBJKB_00226 at 249.197 kb on + strand, within OHPLBJKB_00226 at 249.197 kb on + strand, within OHPLBJKB_00226 at 249.197 kb on + strand, within OHPLBJKB_00226 at 249.197 kb on + strand, within OHPLBJKB_00226 at 249.198 kb on - strand, within OHPLBJKB_00226 at 249.198 kb on - strand, within OHPLBJKB_00226 at 249.198 kb on - strand, within OHPLBJKB_00226 at 249.198 kb on - strand, within OHPLBJKB_00226 at 249.264 kb on + strand, within OHPLBJKB_00226 at 249.373 kb on + strand at 249.374 kb on - strand at 249.376 kb on + strand at 249.376 kb on + strand at 249.376 kb on + strand at 249.376 kb on + strand at 249.376 kb on + strand at 249.376 kb on + strand at 249.377 kb on - strand at 249.377 kb on - strand at 249.377 kb on - strand at 249.377 kb on - strand at 249.380 kb on + strand at 249.381 kb on - strand at 249.381 kb on - strand at 249.391 kb on + strand at 249.408 kb on - strand at 249.493 kb on + strand at 249.493 kb on + strand at 249.493 kb on + strand at 249.493 kb on + strand at 249.493 kb on + strand at 249.493 kb on + strand at 249.494 kb on - strand at 249.494 kb on - strand at 249.494 kb on - strand at 249.494 kb on - strand at 249.494 kb on - strand at 249.509 kb on - strand at 249.694 kb on + strand, within OHPLBJKB_00227 at 249.694 kb on + strand, within OHPLBJKB_00227 at 249.695 kb on - strand, within OHPLBJKB_00227 at 249.754 kb on + strand, within OHPLBJKB_00227 at 249.755 kb on - strand, within OHPLBJKB_00227 at 249.755 kb on - strand, within OHPLBJKB_00227 at 249.759 kb on - strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.048 kb on + strand, within OHPLBJKB_00227 at 250.049 kb on - strand, within OHPLBJKB_00227 at 250.049 kb on - strand, within OHPLBJKB_00227 at 250.088 kb on - strand, within OHPLBJKB_00227 at 250.092 kb on - strand, within OHPLBJKB_00227 at 250.104 kb on + strand, within OHPLBJKB_00227 at 250.104 kb on + strand, within OHPLBJKB_00227 at 250.105 kb on - strand, within OHPLBJKB_00227 at 250.105 kb on - strand, within OHPLBJKB_00227 at 250.187 kb on - strand, within OHPLBJKB_00227 at 250.187 kb on - strand, within OHPLBJKB_00227 at 250.231 kb on - strand, within OHPLBJKB_00227 at 250.231 kb on - strand, within OHPLBJKB_00227 at 250.311 kb on - strand, within OHPLBJKB_00227 at 250.326 kb on - strand, within OHPLBJKB_00227 at 250.475 kb on + strand, within OHPLBJKB_00227 at 250.475 kb on + strand, within OHPLBJKB_00227 at 250.476 kb on - strand, within OHPLBJKB_00227 at 250.519 kb on + strand, within OHPLBJKB_00227 at 250.520 kb on - strand, within OHPLBJKB_00227 at 250.520 kb on - strand, within OHPLBJKB_00227 at 250.522 kb on + strand, within OHPLBJKB_00227 at 250.523 kb on - strand, within OHPLBJKB_00227 at 250.523 kb on - strand, within OHPLBJKB_00227 at 250.568 kb on + strand, within OHPLBJKB_00227 at 250.568 kb on + strand, within OHPLBJKB_00227 at 250.718 kb on + strand, within OHPLBJKB_00227 at 250.780 kb on + strand, within OHPLBJKB_00227 at 250.798 kb on + strand, within OHPLBJKB_00227 at 250.834 kb on + strand at 250.911 kb on - strand at 250.911 kb on - strand at 250.938 kb on + strand at 250.939 kb on - strand at 250.939 kb on - strand at 250.968 kb on - strand at 250.981 kb on + strand at 250.981 kb on + strand at 250.986 kb on + strand at 250.986 kb on + strand at 250.987 kb on - strand at 250.987 kb on - strand at 250.987 kb on - strand at 250.999 kb on + strand at 251.000 kb on - strand at 251.003 kb on + strand at 251.014 kb on + strand at 251.019 kb on - strand at 251.034 kb on + strand at 251.051 kb on + strand at 251.051 kb on + strand at 251.051 kb on + strand at 251.052 kb on - strand at 251.052 kb on - strand at 251.052 kb on - strand at 251.052 kb on - strand at 251.052 kb on - strand at 251.052 kb on - strand at 251.119 kb on + strand at 251.119 kb on + strand at 251.119 kb on + strand at 251.119 kb on + strand at 251.120 kb on - strand at 251.120 kb on - strand at 251.193 kb on + strand, within OHPLBJKB_00228 at 251.194 kb on - strand, within OHPLBJKB_00228 at 251.194 kb on - strand, within OHPLBJKB_00228 at 251.194 kb on - strand, within OHPLBJKB_00228 at 251.450 kb on + strand, within OHPLBJKB_00228 at 251.450 kb on + strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.451 kb on - strand, within OHPLBJKB_00228 at 251.505 kb on + strand, within OHPLBJKB_00228 at 251.506 kb on - strand, within OHPLBJKB_00228 at 251.506 kb on - strand, within OHPLBJKB_00228 at 251.506 kb on - strand, within OHPLBJKB_00228 at 251.506 kb on - strand, within OHPLBJKB_00228 at 251.506 kb on - strand, within OHPLBJKB_00228 at 251.652 kb on - strand at 251.658 kb on + strand at 251.658 kb on + strand at 251.659 kb on - strand at 251.659 kb on - strand at 251.662 kb on + strand at 251.662 kb on + strand at 251.663 kb on - strand at 251.663 kb on - strand at 251.704 kb on - strand at 251.704 kb on - strand at 251.803 kb on + strand at 251.831 kb on + strand, within OHPLBJKB_00229 at 251.831 kb on + strand, within OHPLBJKB_00229 at 251.831 kb on + strand, within OHPLBJKB_00229 at 251.832 kb on - strand, within OHPLBJKB_00229 at 251.832 kb on - strand, within OHPLBJKB_00229 at 251.868 kb on - strand, within OHPLBJKB_00229 at 251.931 kb on - strand, within OHPLBJKB_00229 at 251.950 kb on + strand, within OHPLBJKB_00229 at 251.951 kb on - strand, within OHPLBJKB_00229 at 251.961 kb on - strand, within OHPLBJKB_00229
Per-strain Table
Position Strand Gene LocusTag Fraction HB-P24 MOI10 remove 248,518 - -0.2 248,551 - OHPLBJKB_00226 0.11 -0.2 248,796 + OHPLBJKB_00226 0.37 -0.5 248,797 - OHPLBJKB_00226 0.37 -0.4 248,797 - OHPLBJKB_00226 0.37 -0.5 248,835 + OHPLBJKB_00226 0.41 +0.1 248,835 + OHPLBJKB_00226 0.41 +0.8 248,910 - OHPLBJKB_00226 0.49 -1.5 249,058 + OHPLBJKB_00226 0.65 +1.1 249,058 + OHPLBJKB_00226 0.65 -0.6 249,061 + OHPLBJKB_00226 0.65 -1.0 249,147 + OHPLBJKB_00226 0.74 -0.6 249,197 + OHPLBJKB_00226 0.79 -1.3 249,197 + OHPLBJKB_00226 0.79 -0.2 249,197 + OHPLBJKB_00226 0.79 -0.4 249,197 + OHPLBJKB_00226 0.79 -0.3 249,197 + OHPLBJKB_00226 0.79 -0.1 249,198 - OHPLBJKB_00226 0.80 +0.4 249,198 - OHPLBJKB_00226 0.80 -0.0 249,198 - OHPLBJKB_00226 0.80 -1.5 249,198 - OHPLBJKB_00226 0.80 -0.6 249,264 + OHPLBJKB_00226 0.87 +0.8 249,373 + +0.4 249,374 - -0.6 249,376 + -0.5 249,376 + -0.0 249,376 + -0.1 249,376 + +0.2 249,376 + -0.7 249,376 + -0.2 249,377 - -0.8 249,377 - +0.1 249,377 - -1.5 249,377 - +1.0 249,380 + -0.1 249,381 - +0.8 249,381 - +0.0 249,391 + +1.8 249,408 - +0.5 249,493 + -0.3 249,493 + +0.1 249,493 + +0.7 249,493 + +0.1 249,493 + -0.5 249,493 + +0.4 249,494 - -0.4 249,494 - -0.9 249,494 - +0.2 249,494 - +0.0 249,494 - +0.5 249,509 - +0.0 249,694 + OHPLBJKB_00227 0.19 -1.8 249,694 + OHPLBJKB_00227 0.19 +1.1 249,695 - OHPLBJKB_00227 0.19 +2.1 249,754 + OHPLBJKB_00227 0.23 -0.5 249,755 - OHPLBJKB_00227 0.23 -0.7 249,755 - OHPLBJKB_00227 0.23 +0.7 249,759 - OHPLBJKB_00227 0.23 +1.0 250,048 + OHPLBJKB_00227 0.42 -0.4 250,048 + OHPLBJKB_00227 0.42 -0.8 250,048 + OHPLBJKB_00227 0.42 +0.6 250,048 + OHPLBJKB_00227 0.42 +0.2 250,048 + OHPLBJKB_00227 0.42 +0.1 250,048 + OHPLBJKB_00227 0.42 -0.4 250,049 - OHPLBJKB_00227 0.42 -0.6 250,049 - OHPLBJKB_00227 0.42 +1.1 250,088 - OHPLBJKB_00227 0.44 -0.3 250,092 - OHPLBJKB_00227 0.45 -0.1 250,104 + OHPLBJKB_00227 0.45 -0.7 250,104 + OHPLBJKB_00227 0.45 -0.7 250,105 - OHPLBJKB_00227 0.45 -1.0 250,105 - OHPLBJKB_00227 0.45 +0.4 250,187 - OHPLBJKB_00227 0.51 +0.0 250,187 - OHPLBJKB_00227 0.51 +0.1 250,231 - OHPLBJKB_00227 0.53 +0.7 250,231 - OHPLBJKB_00227 0.53 -1.2 250,311 - OHPLBJKB_00227 0.58 +0.1 250,326 - OHPLBJKB_00227 0.59 -0.7 250,475 + OHPLBJKB_00227 0.69 -0.5 250,475 + OHPLBJKB_00227 0.69 +0.9 250,476 - OHPLBJKB_00227 0.69 -0.2 250,519 + OHPLBJKB_00227 0.72 +0.5 250,520 - OHPLBJKB_00227 0.72 -0.4 250,520 - OHPLBJKB_00227 0.72 -1.3 250,522 + OHPLBJKB_00227 0.72 +0.7 250,523 - OHPLBJKB_00227 0.72 +0.0 250,523 - OHPLBJKB_00227 0.72 -0.5 250,568 + OHPLBJKB_00227 0.75 +0.3 250,568 + OHPLBJKB_00227 0.75 +0.0 250,718 + OHPLBJKB_00227 0.84 -0.3 250,780 + OHPLBJKB_00227 0.88 -0.0 250,798 + OHPLBJKB_00227 0.89 +0.3 250,834 + -0.2 250,911 - +0.2 250,911 - +0.6 250,938 + +0.1 250,939 - +0.5 250,939 - -0.0 250,968 - +0.4 250,981 + +0.2 250,981 + +0.1 250,986 + +0.1 250,986 + -0.7 250,987 - +0.2 250,987 - -0.2 250,987 - +0.0 250,999 + -0.1 251,000 - -0.5 251,003 + -0.3 251,014 + -0.1 251,019 - +0.2 251,034 + -1.0 251,051 + +0.1 251,051 + -0.2 251,051 + -0.2 251,052 - -0.2 251,052 - -0.0 251,052 - -1.8 251,052 - +0.6 251,052 - +1.4 251,052 - -0.5 251,119 + +1.3 251,119 + -0.3 251,119 + -0.5 251,119 + -1.0 251,120 - -0.6 251,120 - -1.0 251,193 + OHPLBJKB_00228 0.20 -0.4 251,194 - OHPLBJKB_00228 0.20 +0.6 251,194 - OHPLBJKB_00228 0.20 +0.1 251,194 - OHPLBJKB_00228 0.20 -0.2 251,450 + OHPLBJKB_00228 0.64 +0.2 251,450 + OHPLBJKB_00228 0.64 +0.3 251,451 - OHPLBJKB_00228 0.64 +1.6 251,451 - OHPLBJKB_00228 0.64 +0.5 251,451 - OHPLBJKB_00228 0.64 -2.8 251,451 - OHPLBJKB_00228 0.64 +0.9 251,451 - OHPLBJKB_00228 0.64 -0.2 251,451 - OHPLBJKB_00228 0.64 +0.6 251,451 - OHPLBJKB_00228 0.64 -0.3 251,505 + OHPLBJKB_00228 0.73 -0.4 251,506 - OHPLBJKB_00228 0.73 -1.0 251,506 - OHPLBJKB_00228 0.73 +0.5 251,506 - OHPLBJKB_00228 0.73 +0.0 251,506 - OHPLBJKB_00228 0.73 +0.4 251,506 - OHPLBJKB_00228 0.73 -0.8 251,652 - +0.1 251,658 + -0.3 251,658 + -0.1 251,659 - +0.3 251,659 - -0.6 251,662 + -0.5 251,662 + +0.5 251,663 - -0.7 251,663 - -0.1 251,704 - -0.3 251,704 - -1.9 251,803 + +0.4 251,831 + OHPLBJKB_00229 0.11 -0.1 251,831 + OHPLBJKB_00229 0.11 +1.2 251,831 + OHPLBJKB_00229 0.11 +0.3 251,832 - OHPLBJKB_00229 0.11 +0.0 251,832 - OHPLBJKB_00229 0.11 -0.0 251,868 - OHPLBJKB_00229 0.14 +0.1 251,931 - OHPLBJKB_00229 0.20 -1.0 251,950 + OHPLBJKB_00229 0.22 -0.7 251,951 - OHPLBJKB_00229 0.22 -1.3 251,961 - OHPLBJKB_00229 0.23 -2.2
Or see this region's nucleotide sequence